KEGG   Pedobacter sp. KBS0701: FFJ24_022920
Entry
FFJ24_022920      CDS       T06361                                 
Name
(GenBank) type IV secretion protein Rhs
  KO
K11904  type VI secretion system secreted protein VgrG
Organism
pek  Pedobacter sp. KBS0701
Pathway
pek03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:pek00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    FFJ24_022920
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:pek02044]
    FFJ24_022920
Secretion system [BR:pek02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   FFJ24_022920
SSDB
Motif
Pfam: Phage_base_V Phage_GPD DUF6484
Other DBs
NCBI-ProteinID: QDW27529
Position
5646048..5647865
AA seq 605 aa
MEKKLITEINIEDKAITHFASFSLKQAFNAHHYFELRFNHDQMGLPGMISLNDSRDFVGK
TLTASFGYDAGALQEFTGLVTKVELAQSHGYHGVLIVSGYSPTILIDRGPDLGSYLDKDL
NSIVNLATSDVPSNDIKIVANAVRKEPIDYLIQYRESDFDFLNRLSGEYHEWFYYDGKQL
NFGKPDDQKEVALVYGRDVQNLQYAMEIAPIKNKRFAYNPKQDEMLQSESSGVSDGSPDL
SHAIQVSNTMYSKTFNQPALIRVDNSNDIKSHVQNEEKAHISNLLKVNASGDNAALGIGS
IAEITMSIRKELSFSTESLGKFLITTINHDIDGTGKYYNTFEGVVATTERLSVKNYTKPN
PDMQLADVIDNADPQGQGRIKVKFKWECKTNDVTEWLRVITPDAGSSDKVSKNRGFVFIP
EIGDQVALTFEEGNIARPIVLGSVFHGKSGSGGSASNNSKSLTSKSGHTLTMDDGAGMVM
KDKDSNFIELDGAGKAVFETKESILIKCGESSIFMDKNGKIIIKGKDILTLGENIGNSAK
TSIGIGVGPEDGTPTSGIGIEAQTLDIGTKTLSMSGETEANLASKKINVGGESETNISSG
TINLN
NT seq 1818 nt   +upstreamnt  +downstreamnt
atggaaaagaaattaatcaccgaaataaatatagaagataaggcaattacccattttgcc
tccttcagtttaaagcaggcatttaatgcccatcattattttgagctgcggtttaaccac
gatcagatggggttgcctggaatgatcagcttaaatgatagtcgcgattttgtagggaaa
acccttactgcttctttcggttatgatgctggcgctttacaagagtttactggtttggta
accaaagtagaactggcgcagagccatggttatcatggtgtactaatcgtgagtggatat
agcccaaccattttgattgatcgcgggcctgatttaggctcttatcttgataaagattta
aatagcattgtaaatcttgccacttcagatgtgccttcgaatgatattaaaatcgtagcc
aacgcggtcagaaaagaaccgattgattacctgattcaatatcgcgaaagtgattttgat
ttcctgaacagactctcgggcgaataccacgaatggttttattatgatggcaaacaactg
aatttcggtaagcctgacgatcagaaagaagttgcccttgtttatggccgcgatgtgcaa
aacctgcagtatgccatggaaattgcgccgattaaaaacaaacgttttgcctataaccct
aaacaggatgaaatgttgcagagcgaaagtagtggcgttagtgatggatcaccagacctg
tcacatgccatacaggtatcaaacaccatgtacagcaaaacatttaatcaacctgcactt
atccgtgttgataatagcaatgatattaaaagccatgtacaaaacgaagaaaaagcacat
atcagcaaccttttaaaggtaaatgccagtggcgataatgctgctttgggtattggcagt
attgccgaaattacgatgagcatcagaaaggaactttcattttctacggagagtctgggt
aaattcttaatcactactattaatcacgatattgatggtactggaaaatattacaatact
ttcgaaggagtggtagccacaacagaacggctttcggtgaaaaattacactaaaccaaat
cccgatatgcaactcgcagatgtgattgataacgccgacccacaagggcaaggccgcatt
aaggtgaaatttaaatgggaatgtaaaaccaacgatgtaaccgagtggctgcgggtaatt
acccctgatgcaggaagcagcgataaagtaagtaaaaacaggggttttgtgtttattcct
gaaatcggcgatcaggtagcgctaacttttgaggagggaaatattgctcgtccgattgtt
ttgggttcggtatttcatggcaaaagcggaagtggtggcagtgccagcaataacagcaaa
agtttaacttctaaaagcggccatacgttaaccatggatgatggggcaggtatggttatg
aaagataaagacagcaattttatcgagctcgacggagcaggtaaagccgttttcgaaacc
aaagaatcgatcctgattaaatgtggcgagagcagcatttttatggataaaaacggcaag
attatcatcaaagggaaagacattttaacccttggtgagaacatcgggaattctgccaaa
accagtatcggcattggtgtaggaccagaagatgggacaccaacctctggtattggtata
gaagcacaaaccttggatatcggcaccaaaacgctttccatgagcggggaaactgaagcg
aaccttgcatcgaaaaaaatcaatgtaggcggcgaaagtgaaacgaatatcagcagtgga
acgatcaatctaaactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (3)   
   Pfam (3)   
All databases (9)   

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