KEGG   Phalaenopsis equestris: 12079679
Entry
12079679          CDS       T05601                                 
Symbol
rpoB, PHEQC_p013
Name
(RefSeq) RNA polymerase beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
peq  Phalaenopsis equestris
Pathway
peq03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:peq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    12079679 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:peq03021]
    12079679 (rpoB)
   03400 DNA repair and recombination proteins [BR:peq03400]
    12079679 (rpoB)
Enzymes [BR:peq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     12079679 (rpoB)
Transcription machinery [BR:peq03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     12079679 (rpoB)
DNA repair and recombination proteins [BR:peq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      12079679 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45
Other DBs
NCBI-GeneID: 12079679
NCBI-ProteinID: YP_006073260
UniProt: H8YJI1
AA seq 1091 aa
MNSEPKADNGIFSIKRKLQIKMLQNGNEGMSTIPGFSQIQFEGFCRFINQGLTEEFHKFQ
KIEDRDQEIEFQLFVETYQLVEPLITERDAVYESLTYSSELYVPAVLIWKTGRNMQEQTV
FIGNIPIMNSFGTSIVNGIYRIVINQILQSPGIYYRSELEHNGVSVYTSTIISDWGGRSE
LEIDRKARIWARVSRKQKISILVLSSAMGSNIREILDNVCYPEIFLSFPNDKEKKKIGSK
ENAILEFYQQFACVGGDPVFSESLCKELQKKFFQQRCELGKIGRQNLNRRLNLDIPQNNT
FLLPRDLLAAVDHLIGMKLGMGTLDDMSHLKNKRIRSVADLLQDQFGLALVRLENTVRGT
ICGAIRHKLIPTPQNLVTSTSLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKWSYLGPG
GLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLMGSLAIHVKVGYWGSIESPFYGLSE
RSKEAQMVYLSPNRDEYYMVAAGNSLALNRDIQEQQVVPARYRQEFLTIAWEEIHLRSIF
PFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLEGQTALDSGVSV
IAECKGKIIYTDTQKIILSSNGDTLSIPLVMYQRSNKNTCMNQKTQVQRGKYIKKGQILA
GGAATAGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYKDIYTSFHIRKYEIQTHVTS
QGPERITKEIPHLEARLLRNLDRNGIVMLGSWIETGDILVGKLTPQTASESSYAPEDRLL
RAILGIQVSTSKETSLRLPIGGRGRVIDVRWIHRRGVSNSNPEKIRVYISQKREIKVGDK
VAGRHGNKGIISKILSRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLK
KHYRIGPFDERYEQEASRKLVFSELYEASKKTKNPWVFEPEYPGKSRIFDGRTGDLFEQP
VLIGKSYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVA
HILQEMLTYKSDHIRARQEVLGAMIIGATVPNPEGAPESFRLLVRELRSLSLELNHFLVS
EKNFQMDRKEA
NT seq 3276 nt   +upstreamnt  +downstreamnt
atgaatagtgagccaaaagccgataatgggattttttcaataaagaggaaacttcagatt
aagatgctccagaatggaaatgagggaatgtccacaatacctggatttagtcagatacaa
tttgagggattttgtaggttcattaatcagggcttgacggaagaatttcataagtttcaa
aaaattgaagatagagatcaagaaattgaatttcaattatttgtggaaacatatcaattg
gtagagcccttgataacagaaagagatgctgtgtatgaatcactcacatattcttctgaa
ttatatgtacccgcggtcttaatttggaaaaccggtagaaatatgcaagaacaaaccgtt
tttattggaaacatccctataatgaattcttttggaacctctatagtaaatggaatatac
cgaattgtgatcaaccaaatattgcaaagtcccggtatttactatcgttcagaattggaa
cataacggagtttctgtctataccagtactataatatcggattgggggggaaggtcggaa
ttagaaattgatagaaaagcaaggatatgggcccgtgtaagtagaaaacaaaaaatatct
attctagttctatcatcagctatgggttcgaatataagagaaattttagataatgtttgt
taccctgagattttcttgtctttcccgaatgataaagagaaaaaaaagattgggtcaaaa
gaaaatgctattttggagttttatcaacaatttgcctgtgtagggggggatccagtattt
tctgagtccttatgcaaggaattacaaaagaaattttttcaacagagatgtgagttagga
aagattggtcgacaaaatctaaaccggagacttaatcttgatataccccaaaacaataca
tttttgttaccacgagatttattggctgctgtggatcatttgatcggaatgaaattggga
atgggtacacttgacgatatgagtcacttgaaaaataaacgtattcgttctgtagcagat
ctattacaggatcaatttggattagctcttgttcgtttagaaaatacggttcgaggaact
atatgtggagcaatcaggcataaattgataccgactcctcaaaatttggtaacttcaact
tcattaacaactacttatgaatcgttttttggcttacaccctttatctcaagttttggat
cgaactaatccgttgacacaaattgttcatgggcgaaaatggagttatttgggtcctgga
ggattgacggggcgaactgctagttttcgaatacgagatatccacccgagtcactatgga
cgtatttgtccaattgacacgtccgaaggaatcaatgttggacttatgggatcattagct
attcatgtgaaggttggttattggggatctatagagagtccattttatggattatctgag
agatcaaaagaggcacagatggtttatttatcaccaaatagagatgaatattatatggta
gcagcaggaaattctttggccttgaatcgggatattcaagaacaacaggttgttccagct
cgatatcgtcaagaattcctgactattgcatgggaagagattcatcttagaagcattttt
cccttccaatatttttctattggagcttccctcattccttttattgagcataatgatgcg
aatcgagctttaatgagttctaatatgcagcgccaagcagttcccctttctcggtccgag
aagtgcattgttggaactgggttggaaggacaaacggctctagattcgggggtttcagtt
atagccgaatgcaagggaaaaatcatttatactgatactcaaaagatcattttatcaagt
aatggggatactctaagcattccattggttatgtatcaacgttccaacaaaaatacttgt
atgaatcaaaaaactcaggttcagcggggtaaatacattaaaaagggacaaattctagcg
ggtggtgcggctacagctggtggggaactcgctttaggaaaaaatgtattagtagcttat
atgccatgggaaggttacaattttgaagacgcagtactaattagcgaacgtctggtttat
aaagatatttatacttcttttcacatccggaaatatgaaattcagactcatgtaacaagc
caaggtcctgaaagaatcactaaggagatcccgcatttagaggctcgtttactccgaaat
ttagacagaaatggaattgtgatgctgggatcttggatagaaacaggtgatatcttagta
ggtaaattaacacctcagacagcgagcgaatcctcatatgccccggaggatagattatta
cgagctatacttggcattcaggtatccacttcaaaagaaacttctctaagactacctata
gggggaaggggtcgagttattgatgtgagatggatccatagaagaggggtttccaattct
aatccagaaaagattcgtgtatatatttcacagaaacgtgaaatcaaagtaggtgataaa
gtagctggaaggcatgggaataagggtataatttctaagattttgtctagacaagatatg
ccctatttgcaagatggaacgcccgttgatatggtattcaacccattaggagtcccctca
cgaatgaatgtgggacagatatttgaatgttcactcgggttagcgggggatcttctaaag
aaacattatagaataggaccttttgatgagagatatgagcaagaggcctcaagaaaacta
gtgttttccgaattatatgaagccagtaagaaaacaaaaaatccatgggtatttgaaccc
gaatatccgggaaaaagcagaatatttgatggaagaacaggagatctttttgaacaacct
gttctaataggaaagtcctatatcctaaaattaatccatcaagttgatgataaaatccat
ggacgttccagtgggcattacgcacttgttacacaacaaccccttagagggagggccaaa
caagggggacaaagagtaggggaaatggaagtttgggctctagagggatttggtgttgct
catatcttacaagagatgcttacttacaaatctgatcatattagagctcgtcaagaagta
cttggtgctatgattattggggcaacagtacctaacccagagggtgctccagaatctttt
cgattgctcgttcgagaactacgatctttgtccctggaactgaatcatttccttgtatct
gaaaagaacttccagatggataggaaggaagcttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

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