GenomeNet

Database: Pfam
Entry: Borrelia_P13
LinkDB: Borrelia_P13
Original site: Borrelia_P13 
#=GF ID   Borrelia_P13
#=GF AC   PF05628.12
#=GF DE   Borrelia membrane protein P13
#=GF AU   Moxon SJ;0000-0003-4644-1816
#=GF SE   Pfam-B_8766 (release 8.0)
#=GF GA   25.00 25.00;
#=GF TC   30.20 28.10;
#=GF NC   24.40 23.60;
#=GF BM   hmmbuild --amino HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 45638612 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   11292755
#=GF RT   P13, an integral membrane protein of Borrelia burgdorferi, is
#=GF RT   C-terminally processed and contains surface-exposed domains. 
#=GF RA   Noppa L, Ostberg Y, Lavrinovicha M, Bergstrom S; 
#=GF RL   Infect Immun 2001;69:3323-3334.
#=GF DR   INTERPRO; IPR008420;
#=GF DR   TC; 1.B.36;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family consists of P13 proteins from Borrelia species. P13
#=GF CC   is a 13kDa integral membrane protein which is
#=GF CC   post-translationally processed at both ends and modified by an
#=GF CC   unknown mechanism [1].
#=GF SQ   14
#=GS H7C7R6_BORBU/37-179  AC H7C7R6.1
#=GS W6THW9_9SPIR/64-200  AC W6THW9.1
#=GS W6TEY3_9SPIR/40-171  AC W6TEY3.1
#=GS G8QU72_SPHPG/56-188  AC G8QU72.1
#=GS O50696_BORBU/58-190  AC O50696.1
#=GS A1QYI7_BORT9/35-174  AC A1QYI7.1
#=GS E7NUI3_TREPH/66-191  AC E7NUI3.1
#=GS Q73PB0_TREDE/67-197  AC Q73PB0.1
#=GS U2KHA3_TRELE/64-187  AC U2KHA3.1
#=GS F0RWP8_SPHGB/64-194  AC F0RWP8.1
#=GS S3K2P0_TREMA/69-186  AC S3K2P0.1
#=GS W5SEM5_9SPIR/38-188  AC W5SEM5.1
#=GS F0RZ86_SPHGB/78-223  AC F0RZ86.1
#=GS Q9S011_BORBU/19-156  AC Q9S011.1
H7C7R6_BORBU/37-179             .......LLVYETSKQ.DPIVPFLLNLF...L.....GFGIGSFAQGDILGGSL...ILGFDAV.GIGLILAGAYl.........diKALDGITKKA....AFQWTWGKGVML...AGVVTMAVTRLTEIILPFTFANSYNRKLKNSLNVALGGFEPSFDVAMGQSSAl...gFELSFKKSY.........................
W6THW9_9SPIR/64-200             .......LLLYESYKQ.NALIPFLLNLF...V.....GFGIGSLVQGDITGGLL...ILGFDAL.SLGLLGYGVY............---STLNSKS....VEVPVVGLSLMT...LGGITMFVTRIVEVVLPFTHAASYNKKLRQNLGIALGGFHPEVDLSFDENSRv...iFELSFTKKY.........................
W6TEY3_9SPIR/40-171             ......m-LFYKANKK.DVLAPFLLNFF...F.....GFGIGSFVQGDITGGLL...VLGSEIL.GLGLVVSGMC............--------LR....SPGTPLGFSLIS...LGGITLFATRIAEMIIPFTYASSYNKKLQEKLGVVLGGFKPQFEANFNENAGl...sFELAFTKKY.........................
G8QU72_SPHPG/56-188             msifsmh-------ES.SPTLPFVVNLL...V.....GAGIGSFIQGDSKGGFT...ALITEVV.GVGLYAAGYA............SVYSTASLDG....EL-SAGGSALML...LGVGALLGGRIYEWIRPFSYSKQYNNQLHSAL--------------------.....---------lgktevlitpvvtavnnqmalgmvg
O50696_BORBU/58-190             .......LLQYEKEQLiDLWIPVMLNLF...L.....PFGVGSFVQGDYIGGGC...TLGFNLL.GLTLLTTGVI............---QMKNLKK....EPASISSMILLL...SGMLTFGSSYLISIYLPVLFEDRYYKNLMNRIIDELAGFEPNLDIGMNG---.....FQLSFKKSY.........................
A1QYI7_BORT9/35-174             ......m-LLYETYKK.DAVVPCLLNLF...V.....GFGIGSLVQGDITGGLL...SLGFDVV.SIGLLSYGTY............SIIESHYEKK....EKPTVLALSLAA...VGGATLVLTRIIEAVLPFTYASSYNRKLQENLGITLGGLQPEVDMNFNEDARl...mLEVSFTKRY.........................
E7NUI3_TREPH/66-191             .llnrnt--------L.SLDIPMLLNGV...I.....GFGSGSFVNKDYIAGGI...HCGIDVAcTITSITVGYL............YSTRMMNSATsydsDKMLKDTKIVLYtaiTGFSVLAINKIAQLITLPVYTNKYNAALHDAL--------------------.....---------lgqgvaakkpv..............
Q73PB0_TREDE/67-197             ....lli---QKKYQK.DLAVPLLLNGF...V.....GFGSGNFACGDMLGGGI...HAAIDGL.SVLSMLTMQFinlvdlfsttssDPLASIANID....RRMKIFSYVAYS...AGSI-MLVNRIASLITASLYVKRYNQTLNDVLIKK-----------------.....---------ipkvsftp.................
U2KHA3_TRELE/64-187             .....ls--LYNKEKK.ETLGPVAINVFs.fLvgippNLGIGSFAQKDIAGGVI...HLGTGLI.GTGCAVGGCL............--SLLISKKP....EEYAI--PLLVA...GGAISLG-SWIFGIVRPITYASKYNRRLEQALLL------------------.....---------ndaqmsivpla..............
F0RWP8_SPHGB/64-194             ......n-IVYESNKQ.TTTTPLVLNLL...L.....GCGIGSFVQGDTYGGTM...GLVLDLL.STTLFYTGYM............QSLEASTR-W....SSDGTEGSELII...MGAAMMLGSKIGQLIRPFIYANEYNKNLSSALM-------------------.....---------svsmvpvmdqnkefgmrvaani...
S3K2P0_TREMA/69-186             .....al---YKKGKT.DALPSVALNAFsffIgi.ppNLGIGSFVQHDTAGGLI...NLGTGLA.GIGCITSGLI............--L----FKT....NPD-TAAALFVS...GGALCLG-SWIFGIVRPIVFASSHNKKLEDALL-------------------.....---------lktkvtlvpa...............
W5SEM5_9SPIR/38-188             ......f-LFYESNKK.TALIPALLNVT...I.....GFGIGTFTQGDVLGGLL...LMGTDAL.GVSLLTYGLFsrhq....fntlTEAQQKTDPG....QKKGTISVSLIA...IGAATMGLTRIVGIILPFTYAYNFNKRLQKDLGIELGGFKPTFDLNFNEGSTggllgLELAFVKKY.........................
F0RZ86_SPHGB/78-223             .....la--LYEQAQI.SIAWPAFKNLL...A.....GFGSGSKLQGDL-GGQLfgqIADWTAA.TTIGVGLGTYli........dlFFIQLFAASSn.fdDPLQDFAVGTMA...VGAIFLLTERVIQAVLPIPYGARYNKTLRNGLGVSKDG--------------.....---------sdalsisvafvpgmqasqlgmk...
Q9S011_BORBU/19-156             .......VMKYESKKA.TILAPLLLNIF...L.....SLGIGSFVQGDYIGGGA...LLGSQVL.GGILIMAGYM............TGDIGFVTES....TATVITGGVLSG...IGGLTIAASYITGIIIPFKFANRYNADLKKRLGIALAGLEPNFDIGINGDSN.....YRLKNPIEY.........................
#=GC seq_cons                   .........hYcptKp.sshhPhlLNlF...l.....GFGIGSFlQGDhhGGhl...hLGh-ll.ulsLlssGhh..............hphhspps....p.hsshuhsLhs...hGulshhso+IhpllhPhsYAspYN+pLppsLhh.........................................................
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