GenomeNet

Database: Pfam
Entry: Carmo_coat_C
LinkDB: Carmo_coat_C
Original site: Carmo_coat_C 
#=GF ID   Carmo_coat_C
#=GF AC   PF08462.13
#=GF DE   Carmovirus coat protein
#=GF AU   Wuster A;0000-0003-4162-5931
#=GF SE   Pfam-B_4180 (release 18.0)
#=GF GA   21.00 21.00;
#=GF TC   21.00 21.10;
#=GF NC   20.40 20.70;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF CL   CL0055
#=GF DR   INTERPRO; IPR013669;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This domain is found to the C-terminus of the Pfam:PF00729
#=GF CC   domain in Carmoviruses.
#=GF SQ   5
#=GS Q70WU3_9TOMB/247-345      AC Q70WU3.1
#=GS CAPSD_CARMV/250-348       AC P04383.1
#=GS CAPSD_CARMV/250-348       DR PDB; 1OPO B; 250-348;
#=GS CAPSD_CARMV/250-348       DR PDB; 1OPO A; 250-348;
#=GS CAPSD_CARMV/250-348       DR PDB; 1OPO C; 250-348;
#=GS E7EEK8_9TOMB/247-344      AC E7EEK8.1
#=GS CAPSD_CARMS/250-348       AC Q9Q6X7.1
#=GS A0A1J1DNU3_9TOMB/249-347  AC A0A1J1DNU3.1
Q70WU3_9TOMB/247-345                 ..qhgtlt------TSSGPPYATLTTTATSTSMELNTHGKWLVV-WVSADEVINSPVISGSGASGSVTVVSD.A.QTTVVAVVTaNLPGAIISNTSTAAPSSLEWYVSR-l
CAPSD_CARMV/250-348                  ........QASNDKVSDGPTYVVPSVNGNELQLRVVAAGKWCIIVRGTVEGGFTKPTLIGPGISGDVDYESA.R.PIAVCELVT.QMEGQILKITKTSAEQPLQWVVYRM.
#=GR CAPSD_CARMV/250-348       SS    ........EETTSGGGSSS-SEEEEEETTEEEEEE-SSEEEEEEEE-SSSSSB---EEESTTEEEEEEEETT.T.TEEEEEEEE.SSTTEEEEEEB-TTS---EEEEEE-.
E7EEK8_9TOMB/247-344                 qkgtnsey--------EGPLYGALERTNSAITLTLQAPGNWLVVWI--SPEAFNSPTVTGSGASGTVSYQSGgS.SMAVTTVIA.NLPGAQVTAPTTTAVKELQWYVSR-l
CAPSD_CARMS/250-348                  ........QASNDKVSDGPTYVVPSVNGNELQLRVVAAGKWCIIVRGTVEGGFTKPTLIGPGISGDVDYESA.R.PIAICELVT.QMEGQMLKITKTSAEQPLKVVVYRM.
A0A1J1DNU3_9TOMB/249-347             qmcingsl--------TGPEYARPEKIGNVWQLKLLAAGSWFILLRGDVDGGWSKPSLDGGAITGSVDYTTE.DgGYAVCVVEA.HSENQAISTTLLSG-TVVSWFVFR-v
#=GC SS_cons                         ........EETTSGGGSSS-SEEEEEETTEEEEEE-SSEEEEEEEE-SSSSSB---EEESTTEEEEEEEETT.T.TEEEEEEEE.SSTTEEEEEEB-TTS---EEEEEE-.
#=GC seq_cons                        ..thss.h......sS-GPsYusPossGNslQL+LlAAGKWhIllRGoV-GGFoKPTLsGuGISGoVDYpSu.c.shAVCsVVT.phEGQhlosTpTSA.psLpWaVaR.l
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