#=GF ID HTH_Tnp_1_2
#=GF AC PF13022.12
#=GF DE Helix-turn-helix of insertion element transposase
#=GF AU Coggill P;0000-0001-5731-1588
#=GF SE pdb_2ao9
#=GF GA 27.90 27.90;
#=GF TC 27.90 27.90;
#=GF NC 27.80 27.80;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -E 1000 -Z 81514348 --cpu 4 HMM pfamseq
#=GF TP Domain
#=GF CL CL0123
#=GF DR INTERPRO; IPR024978;
#=GF DR SO; 0000417; polypeptide_domain;
#=GF CC This is a family of largely phage proteins which are likely to
#=GF CC be a helix-turn-helix insertion elements.
#=GF SQ 209
#=GS A0A398BFC3_9BACI/1-123 AC A0A398BFC3.1
#=GS A0A139ZPD9_9CAUD/3-126 AC A0A139ZPD9.1
#=GS A0A4Q0AH55_9BACT/2-115 AC A0A4Q0AH55.1
#=GS A0A4R1Q3A3_9FIRM/43-158 AC A0A4R1Q3A3.1
#=GS A0A142F1L5_9CAUD/1-130 AC A0A142F1L5.1
#=GS A0A8J3EN02_9BACL/1-118 AC A0A8J3EN02.1
#=GS A0A0P0ICX3_9CAUD/2-125 AC A0A0P0ICX3.1
#=GS A0A2N0ZFB8_9BACI/1-128 AC A0A2N0ZFB8.1
#=GS A0A451EHJ7_9CAUD/4-128 AC A0A451EHJ7.1
#=GS Q8TJF7_METAC/16-135 AC Q8TJF7.1
#=GS A0A3N5BB50_9STAP/1-136 AC A0A3N5BB50.1
#=GS A0A7X9LXK4_9BACI/1-124 AC A0A7X9LXK4.1
#=GS A0A345AVW1_9CAUD/1-119 AC A0A345AVW1.1
#=GS A0A345AZX7_9CAUD/1-119 AC A0A345AZX7.1
#=GS A0A840CKK8_9BACT/1-82 AC A0A840CKK8.1
#=GS A0A451EFU5_9CAUD/4-128 AC A0A451EFU5.1
#=GS A0A7T1AKY8_ATRLM/1-126 AC A0A7T1AKY8.1
#=GS A0A5J4J912_9BACI/1-117 AC A0A5J4J912.1
#=GS A0A4Q1TAR9_9BACL/7-129 AC A0A4Q1TAR9.1
#=GS A0A235B221_9BACL/7-135 AC A0A235B221.1
#=GS A0A0S2MYF8_9CAUD/1-104 AC A0A0S2MYF8.1
#=GS A0A7S8HG09_9BACI/12-147 AC A0A7S8HG09.1
#=GS K6DDC2_9BACI/1-134 AC K6DDC2.1
#=GS A0A6I3SMT7_HELMO/2-128 AC A0A6I3SMT7.1
#=GS A0A369BPF1_9BACL/1-119 AC A0A369BPF1.1
#=GS A0A9E7LK82_9CAUD/1-117 AC A0A9E7LK82.1
#=GS A0A926DZ30_9FIRM/1-115 AC A0A926DZ30.1
#=GS A0A8J8KB98_9BACI/1-135 AC A0A8J8KB98.1
#=GS A0A926E1P9_9FIRM/130-233 AC A0A926E1P9.1
#=GS F5IXM5_9BACT/1-97 AC F5IXM5.1
#=GS A0A1C0A7L9_9FIRM/1-104 AC A0A1C0A7L9.1
#=GS A0A7U0GDK6_9CAUD/6-122 AC A0A7U0GDK6.1
#=GS A0A235B8E2_9BACL/37-155 AC A0A235B8E2.1
#=GS A0A3M7KFA1_9BACT/1-117 AC A0A3M7KFA1.1
#=GS A0A6G7X297_9BACT/4-88 AC A0A6G7X297.1
#=GS A0A7D7IUC5_9CAUD/1-117 AC A0A7D7IUC5.1
#=GS A0A7U0J7W3_9CAUD/6-122 AC A0A7U0J7W3.1
#=GS A0A2S5D296_LYSSH/15-111 AC A0A2S5D296.1
#=GS C8VXY1_DESAS/2-126 AC C8VXY1.1
#=GS R2PXF7_9ENTE/4-129 AC R2PXF7.1
#=GS A0A0R1Y1G9_9LACO/1-119 AC A0A0R1Y1G9.1
#=GS A0A1C3F6T9_9FIRM/1-124 AC A0A1C3F6T9.1
#=GS A0A0L6JKQ5_9FIRM/11-144 AC A0A0L6JKQ5.1
#=GS A0A934WFF4_9BACT/2-90 AC A0A934WFF4.1
#=GS A0A221MCG0_9BACI/2-135 AC A0A221MCG0.1
#=GS A0A1I3UMJ1_9BACL/1-102 AC A0A1I3UMJ1.1
#=GS A0A380HD05_9STAP/3-124 AC A0A380HD05.1
#=GS A0A329KNP3_9BACL/4-133 AC A0A329KNP3.1
#=GS A0A941AQR8_9BACI/1-57 AC A0A941AQR8.1
#=GS A0A1M4VCC9_9BACL/1-124 AC A0A1M4VCC9.1
#=GS A0A0L6JH04_9FIRM/1-130 AC A0A0L6JH04.1
#=GS A0A265Q2Q3_9FIRM/7-126 AC A0A265Q2Q3.1
#=GS A0A951PAF2_9CYAN/1-78 AC A0A951PAF2.1
#=GS A0A3D9HP89_9BACL/5-129 AC A0A3D9HP89.1
#=GS M8E644_9BACL/1-134 AC M8E644.1
#=GS V9GDY6_9BACL/5-143 AC V9GDY6.1
#=GS A0A840CZK0_9BACT/1-83 AC A0A840CZK0.1
#=GS A0A1M5C4C3_9BACT/1-97 AC A0A1M5C4C3.1
#=GS A0A075JZI2_9BACI/1-127 AC A0A075JZI2.1
#=GS R6N2B3_9CLOT/1-112 AC R6N2B3.1
#=GS A0A4R2R9S8_9FIRM/8-128 AC A0A4R2R9S8.1
#=GS A0A4Z0QQ70_9FIRM/13-134 AC A0A4Z0QQ70.1
#=GS A0A917NI72_9BACL/7-92 AC A0A917NI72.1
#=GS A0A6I3SQ24_HELMO/1-127 AC A0A6I3SQ24.1
#=GS A0A162L450_9CLOT/12-137 AC A0A162L450.1
#=GS A0A0B0IKX4_9BACI/1-127 AC A0A0B0IKX4.1
#=GS A0A521F9L8_9BACL/1-119 AC A0A521F9L8.1
#=GS A0A3D9I692_9BACL/3-139 AC A0A3D9I692.1
#=GS A0A0D4CJU0_LIMMU/3-132 AC A0A0D4CJU0.1
#=GS A0A2W0HE00_9BACI/10-136 AC A0A2W0HE00.1
#=GS L1QGB9_9CLOT/3-124 AC L1QGB9.1
#=GS A0A1J0GI95_9CLOT/6-100 AC A0A1J0GI95.1
#=GS A0A917FKP5_9BACL/3-134 AC A0A917FKP5.1
#=GS H5Y270_9FIRM/5-120 AC H5Y270.1
#=GS A0A0P0IZC1_9CAUD/2-125 AC A0A0P0IZC1.1
#=GS A0A1W6JP86_9CAUD/6-121 AC A0A1W6JP86.1
#=GS A0A0R2LIS8_9LACO/7-138 AC A0A0R2LIS8.1
#=GS A0A6C1BW03_9AQUI/7-125 AC A0A6C1BW03.1
#=GS A0A2K8N342_9BACL/4-90 AC A0A2K8N342.1
#=GS A0A8J6IPB6_9FIRM/1-117 AC A0A8J6IPB6.1
#=GS Q597W0_9CAUD/6-128 AC Q597W0.1
#=GS A0A977XDA6_9CAUD/10-132 AC A0A977XDA6.1
#=GS A0A385NS30_9BACI/1-120 AC A0A385NS30.1
#=GS A0A559JMA3_9BACL/6-127 AC A0A559JMA3.1
#=GS A0A917B350_HALAA/1-121 AC A0A917B350.1
#=GS A0A151Z268_9BACL/1-59 AC A0A151Z268.1
#=GS A0A1I0E9U5_9BACI/1-120 AC A0A1I0E9U5.1
#=GS A0A1T4RCZ7_9ENTE/1-124 AC A0A1T4RCZ7.1
#=GS A0A7X5R6H1_9FIRM/1-95 AC A0A7X5R6H1.1
#=GS A0A2N0ZEA0_9BACI/5-132 AC A0A2N0ZEA0.1
#=GS A0A0P6WU53_9CHLR/1-126 AC A0A0P6WU53.1
#=GS A0A4D6AQP6_9CAUD/1-114 AC A0A4D6AQP6.1
#=GS A0A1I7JKX5_9CLOT/8-113 AC A0A1I7JKX5.1
#=GS A0A1L2JXH0_9CAUD/4-128 AC A0A1L2JXH0.1
#=GS A0A2N5HEU7_9BACI/1-92 AC A0A2N5HEU7.1
#=GS A0A0M0L5T3_9BACI/1-127 AC A0A0M0L5T3.1
#=GS C8VXN7_DESAS/1-124 AC C8VXN7.1
#=GS A0A0M3DED0_9CLOT/1-122 AC A0A0M3DED0.1
#=GS S0JZD9_9ENTE/1-110 AC S0JZD9.1
#=GS A0A2S1H2K3_9BACI/1-128 AC A0A2S1H2K3.1
#=GS C6J0U9_9BACL/1-141 AC C6J0U9.1
#=GS A0A6I3SMW1_HELMO/9-129 AC A0A6I3SMW1.1
#=GS F2JQV2_CELLD/21-137 AC F2JQV2.1
#=GS A0A430A199_9ENTE/1-123 AC A0A430A199.1
#=GS A0A191KB93_9CAUD/4-128 AC A0A191KB93.1
#=GS A0A4V1AIZ9_9LACO/1-116 AC A0A4V1AIZ9.1
#=GS A0A2S0UBS0_9BACL/1-119 AC A0A2S0UBS0.1
#=GS A0A0N7GFF5_9CAUD/1-119 AC A0A0N7GFF5.1
#=GS F9UA81_9GAMM/1-80 AC F9UA81.1
#=GS A0A088GGH2_9LACO/1-112 AC A0A088GGH2.1
#=GS A0A242KD74_9ENTE/3-131 AC A0A242KD74.1
#=GS A0A2B2CDU0_9BACI/4-135 AC A0A2B2CDU0.1
#=GS H1XPW3_CALAY/2-104 AC H1XPW3.1
#=GS A0A857ML52_9BACT/30-141 AC A0A857ML52.1
#=GS F5J1K8_9BACT/1-101 AC F5J1K8.1
#=GS A0A1H0H0I1_9BACT/3-124 AC A0A1H0H0I1.1
#=GS A0A4U2Z1M0_9BACI/3-143 AC A0A4U2Z1M0.1
#=GS A0A840D030_9BACT/1-82 AC A0A840D030.1
#=GS R7GUP9_9FIRM/1-90 AC R7GUP9.1
#=GS A0A0U1KWM5_9FIRM/23-135 AC A0A0U1KWM5.1
#=GS A0A1S8TW17_9CLOT/1-78 AC A0A1S8TW17.1
#=GS A0A2B2CCC4_9BACI/4-127 AC A0A2B2CCC4.1
#=GS A0A1Q9PXJ6_9BACI/5-128 AC A0A1Q9PXJ6.1
#=GS A0A139ZPM3_9CAUD/3-126 AC A0A139ZPM3.1
#=GS A0A269WAY6_9BACL/1-140 AC A0A269WAY6.1
#=GS S5VL37_9CAUD/28-153 AC S5VL37.1
#=GS F5J0S0_9BACT/1-86 AC F5J0S0.1
#=GS L0P6X1_9CAUD/1-127 AC L0P6X1.1
#=GS A0A6G7X2K6_9BACT/2-97 AC A0A6G7X2K6.1
#=GS A0A919WIR9_9BACI/1-117 AC A0A919WIR9.1
#=GS A0A4D5ZZ29_9CAUD/1-114 AC A0A4D5ZZ29.1
#=GS A0A0Q3VG54_9BACI/1-133 AC A0A0Q3VG54.1
#=GS A0A3A9E2G7_UNCXX/1-113 AC A0A3A9E2G7.1
#=GS A0A329L6J0_9BACL/4-106 AC A0A329L6J0.1
#=GS A0A5D3FSX9_9BACE/1-88 AC A0A5D3FSX9.1
#=GS A0A1Y4CDZ0_9BACT/3-94 AC A0A1Y4CDZ0.1
#=GS F5IYK0_9BACT/1-98 AC F5IYK0.1
#=GS A0A840CLI0_9BACT/1-83 AC A0A840CLI0.1
#=GS A0A6I0EN14_9FIRM/1-108 AC A0A6I0EN14.1
#=GS T0BU85_ALIAG/1-132 AC T0BU85.1
#=GS A0A191KBQ0_9CAUD/4-128 AC A0A191KBQ0.1
#=GS A0A4V2SW67_9FIRM/1-127 AC A0A4V2SW67.1
#=GS A0A934JC86_9BACL/3-133 AC A0A934JC86.1
#=GS A0A248TLR9_9BACI/9-140 AC A0A248TLR9.1
#=GS A0A2V5JV42_9BACL/19-141 AC A0A2V5JV42.1
#=GS F5ISG8_9BACT/2-88 AC F5ISG8.1
#=GS A0A0M3R9J4_9BACI/1-137 AC A0A0M3R9J4.1
#=GS M1MJE6_9CLOT/2-127 AC M1MJE6.1
#=GS A0A7V7RM21_9BACI/1-115 AC A0A7V7RM21.1
#=GS A0A1Y4TKH5_9FIRM/3-98 AC A0A1Y4TKH5.1
#=GS A0A6I3SMV3_HELMO/2-126 AC A0A6I3SMV3.1
#=GS A0A8A0RQD2_9FIRM/1-119 AC A0A8A0RQD2.1
#=GS A0A919YXB5_9BACL/26-144 AC A0A919YXB5.1
#=GS A0A7W1X8F5_9BACL/1-125 AC A0A7W1X8F5.1
#=GS A0A4V6RXM1_9BACI/6-137 AC A0A4V6RXM1.1
#=GS A0A345AVM0_9CAUD/1-119 AC A0A345AVM0.1
#=GS A0A1S2LKV1_9BACI/9-131 AC A0A1S2LKV1.1
#=GS A0A4D6A6S3_9CAUD/2-115 AC A0A4D6A6S3.1
#=GS A0A549YEN4_9BACI/8-133 AC A0A549YEN4.1
#=GS A0A517SEV8_9PLAN/19-86 AC A0A517SEV8.1
#=GS A0A1W6JNP4_9CAUD/1-121 AC A0A1W6JNP4.1
#=GS A0A859FFR3_9BACI/1-126 AC A0A859FFR3.1
#=GS A0A6G6XVS7_9CAUD/1-125 AC A0A6G6XVS7.1
#=GS A0A840CUE4_9BACT/1-80 AC A0A840CUE4.1
#=GS I3VYX1_9CAUD/1-111 AC I3VYX1.1
#=GS A0A024P740_9BACI/1-120 AC A0A024P740.1
#=GS A0A0R1WTY7_9LACO/5-136 AC A0A0R1WTY7.1
#=GS A0A0J1IPX1_9FIRM/8-110 AC A0A0J1IPX1.1
#=GS A0A5R9GJ10_9BACL/9-108 AC A0A5R9GJ10.1
#=GS Q81ES4_BACCR/13-146 AC Q81ES4.1
#=GS Q81ES4_BACCR/13-146 DR PDB; 2AO9 D; 23-132;
#=GS Q81ES4_BACCR/13-146 DR PDB; 2AO9 A; 13-132;
#=GS Q81ES4_BACCR/13-146 DR PDB; 2AO9 G; 24-132;
#=GS Q81ES4_BACCR/13-146 DR PDB; 2AO9 I; 23-133;
#=GS Q81ES4_BACCR/13-146 DR PDB; 2AO9 C; 14-132;
#=GS Q81ES4_BACCR/13-146 DR PDB; 2AO9 F; 16-131;
#=GS Q81ES4_BACCR/13-146 DR PDB; 2AO9 E; 14-132;
#=GS Q81ES4_BACCR/13-146 DR PDB; 2AO9 B; 14-131;
#=GS Q81ES4_BACCR/13-146 DR PDB; 2AO9 H; 15-130;
#=GS A0A9E7RZF3_9CAUD/1-117 AC A0A9E7RZF3.1
#=GS A0A6V8QEK1_9ACTN/1-116 AC A0A6V8QEK1.1
#=GS A0A840CZM7_9BACT/1-88 AC A0A840CZM7.1
#=GS A0A6I3SLN2_HELMO/2-126 AC A0A6I3SLN2.1
#=GS A0A0M9BI23_9BACL/1-137 AC A0A0M9BI23.1
#=GS R7F877_9CLOT/1-116 AC R7F877.1
#=GS A0A3Q9QXK4_9BACI/1-131 AC A0A3Q9QXK4.1
#=GS A0A3R9QMH4_9BACI/2-138 AC A0A3R9QMH4.1
#=GS A0A1P8BM76_9CAUD/1-115 AC A0A1P8BM76.1
#=GS A0A6I3SPZ2_HELMO/1-127 AC A0A6I3SPZ2.1
#=GS A0A7X5R625_9FIRM/1-103 AC A0A7X5R625.1
#=GS A0A4R2RCD7_9FIRM/8-128 AC A0A4R2RCD7.1
#=GS A0A1A5WQU8_9BACL/1-114 AC A0A1A5WQU8.1
#=GS A0A940NU23_9BACI/1-123 AC A0A940NU23.1
#=GS A0A223KV60_9BACI/9-139 AC A0A223KV60.1
#=GS A0A229UHW9_9BACL/3-123 AC A0A229UHW9.1
#=GS I6TG19_9CAUD/6-118 AC I6TG19.1
#=GS A0A926I4F8_9FIRM/1-120 AC A0A926I4F8.1
#=GS F5J3C7_9BACT/1-144 AC F5J3C7.1
#=GS A0A0X3AS84_9FLAO/9-112 AC A0A0X3AS84.1
#=GS V9W8H4_9BACL/1-119 AC V9W8H4.1
#=GS A0A1B7LF15_9FIRM/5-128 AC A0A1B7LF15.1
#=GS A0A978CA26_9BACI/1-133 AC A0A978CA26.1
#=GS A0A345ASY2_9CAUD/1-119 AC A0A345ASY2.1
#=GS A0A0Q7IQF0_9BACL/3-123 AC A0A0Q7IQF0.1
#=GS A0A372LQ37_9BACI/13-137 AC A0A372LQ37.1
#=GS A0A942TU11_9BACI/1-118 AC A0A942TU11.1
#=GS A0A2C0ZDC1_9BACI/1-127 AC A0A2C0ZDC1.1
#=GS A0A451EFX2_9CAUD/4-128 AC A0A451EFX2.1
#=GS A0A7W0BTA3_9BACI/4-108 AC A0A7W0BTA3.1
#=GS A0A095Y653_9BACT/5-88 AC A0A095Y653.1
#=GS A0A6M1U7X4_9BACL/1-114 AC A0A6M1U7X4.1
#=GS A0A4R2RIJ9_9FIRM/11-135 AC A0A4R2RIJ9.1
#=GS V6MJ66_9BACL/1-135 AC V6MJ66.1
#=GS A0A840CU63_9BACT/1-83 AC A0A840CU63.1
#=GS A0A437KBM4_9BACI/1-125 AC A0A437KBM4.1
#=GS H2J441_MARPK/5-126 AC H2J441.1
#=GS F7NK75_9FIRM/1-102 AC F7NK75.1
#=GS A0A4R2BG56_9BACI/1-131 AC A0A4R2BG56.1
A0A398BFC3_9BACI/1-123 ..............................MAKRI--.....LNEKQ.WAAI.TIL....SQP..K....R..........A.G.MTYEEVAKEVGVAKST....LF.E.WK..KL.....DE....F..N..D....A..I.....K...N.......A.......VV...R...NT..T.DR.L....P.......D........MF.D........SM..ID..N.IiETG--..........NAA...AFR..TVVQL.H...G...M...L.TEKV..E..VA...SK..GDA-...----------adidsmraeierirg.........................................................................
A0A139ZPD9_9CAUD/3-126 .........................rkelr---KVNKk...gISKRQ.QRAI.EMLl..dIEK..D....Y..........-.-.-TKKEIAAKLGISETA....LY.K.WF..KK.....EE....F..V..E....E..L.....N...K.......Q.......SE...E...FF..K.RS.K....N.......I........VN.K........AL..LK..K.I.MKG--..........DVS...AMR..LYYEK.E...N...E...F.VQKH..Q..FS...GN..FELV..iDGNEINDSE-d.......................................................................................
A0A4Q0AH55_9BACT/2-115 .......srnlaadkkklleklrktpivev-------.....-----.----.---....---..-....-..........-.-.-----ACKQSGVPRST....YY.R.WR.kDD.....ED....F..A..S....E..C.....D...E.......A.......IE...N...SA..G.LI.N....D.......M........AE.S........QL..IS..A.I.KDK--..........NMS...AIF..FWLKH.H...H...K...S.Y-KT..R..IE...V-..----...----------naklqtiqqeltpeqte.......................................................................
A0A4R1Q3A3_9FIRM/43-158 ......................vmksnewv-------.....PHAKQ.IAIA.RLL....VNP..E....N..........-.R.GTKEQKAKDAGITYKT....LW.V.WM..QD.....PN....F..V..A....Y..L.....N...S.......L.......IN...Q...YT..D.AE.T....A.......E........VW.K........AL..IR..K.A.KMG--..........DVS...AIK..LFFEM.K...G...M...Y.KEQK..K..VE...HT..----...----------gegggpidte..............................................................................
A0A142F1L5_9CAUD/1-130 ..............................MPNKFDD.....LSEQQ.KRAA.ELL....LEN..D....Lap......kaE.K.RKLEDIAEEVGVARKT....LW.D.WR.rRN.....TL....F..I..E....Y..K.....Q...H.......L.......TT...L...SL..Q.DA.H....G.......E........LA.R........VL..IT..N.L.QSSQP..........STK...MLD..LLAKM.T...P...N...A.LAAN..R..QE...VV..METN..eTSNEEVM---kriee...................................................................................
A0A8J3EN02_9BACL/1-118 ............................mk------K.....LDETQ.QRAI.ELL....LER..K....I..........K.R.REYQDIADELGVHRNT....LL.S.WR..KD.....PL....F..Q.aE....Y..K.....R...A.......V.......VT...N...SH..D.RL.D....E.......L........VT.A........ML..DN..A.I.SEG--..........NAA...MAK..LVLQM.N...G...M...L.TDKL..E..VE...NK..GADN...TQ--------tsdidamka...............................................................................
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