GenomeNet

Database: Pfam
Entry: Pathogen_betaC1
LinkDB: Pathogen_betaC1
Original site: Pathogen_betaC1 
#=GF ID   Pathogen_betaC1
#=GF AC   PF09593.10
#=GF DE   Beta-satellite pathogenicity beta C1 protein
#=GF PI   Phage_C1; 
#=GF AU   Coggill P;0000-0001-5731-1588
#=GF SE   Pfam-B_991 (release 21.0)
#=GF GA   25.00 25.00;
#=GF TC   46.80 46.60;
#=GF NC   22.10 19.20;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 45638612 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   11437658
#=GF RT   Identification of dna components required for induction of
#=GF RT   cotton leaf curl disease. 
#=GF RA   Briddon RW, Mansoor S, Bedford ID, Pinner MS, Saunders K,
#=GF RA   Stanley J, Zafar Y, Malik KA, Markham PG; 
#=GF RL   Virology. 2001;285:234-243.
#=GF RN   [2]
#=GF RM   14551819
#=GF RT   Cotton leaf curl disease is associated with multiple monopartite
#=GF RT   begomoviruses supported by single DNA beta. 
#=GF RA   Mansoor S, Briddon RW, Bull SE, Bedford ID, Bashir A, Hussain M,
#=GF RA   Saeed M, Zafar Y, Malik KA, Fauquet C, Markham PG; 
#=GF RL   Arch Virol. 2003;148:1969-1986.
#=GF RN   [3]
#=GF RM   17872543
#=GF RT   A monopartite begomovirus-associated DNA beta satellite
#=GF RT   substitutes for the DNA B of a bipartite begomovirus to permit
#=GF RT   systemic infection. 
#=GF RA   Saeed M, Zafar Y, Randles JW, Rezaian MA; 
#=GF RL   J Gen Virol. 2007;88:2881-2889.
#=GF DR   INTERPRO; IPR018583;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   Cotton leaf-curl disease - CLCuD - is of major economic
#=GF CC   importance in cotton-growing areas of the far-east. The
#=GF CC   infectious agent appears to be a single-stranded DNA molecule of
#=GF CC   approx 1350 nucleotides in length, which, when inoculated with
#=GF CC   the Begomovirus into cotton, induces symptoms typical of CLCuD.
#=GF CC   This molecule requires the Begomovirus for replication and
#=GF CC   encapsidation [1]. DNA beta encodes a single protein, betaC1.
#=GF CC   The intracellular distribution of betaC1 is consistent with the
#=GF CC   hypothesis that it has a role in transporting the DNA A of
#=GF CC   Begomovirus from the nuclear site of replication to the
#=GF CC   plasmodesmatal exit sites of the infected cell. The DNA
#=GF CC   beta-encoded protein, betaC1, is the determinant of both
#=GF CC   pathogenicity and suppression of gene silencing [3].
#=GF SQ   29
#=GS A0A191KVK2_9VIRU/2-117  AC A0A191KVK2.1
#=GS E7BNB9_9VIRU/2-118      AC E7BNB9.1
#=GS B1B3G7_9VIRU/2-116      AC B1B3G7.1
#=GS I3QBA1_9VIRU/2-117      AC I3QBA1.1
#=GS A0A1P8JPQ3_9VIRU/2-118  AC A0A1P8JPQ3.1
#=GS A9NJ54_9VIRU/2-118      AC A9NJ54.1
#=GS C1IW25_9VIRU/10-126     AC C1IW25.1
#=GS Q2VU50_9VIRU/2-89       AC Q2VU50.1
#=GS Q7T470_9VIRU/2-116      AC Q7T470.1
#=GS Q49LL7_9VIRU/2-118      AC Q49LL7.1
#=GS B0JEU4_9VIRU/3-117      AC B0JEU4.1
#=GS C3VIY0_9VIRU/5-119      AC C3VIY0.1
#=GS E5Q3H4_9VIRU/2-117      AC E5Q3H4.1
#=GS H9LCS6_9VIRU/2-118      AC H9LCS6.1
#=GS D3HTY4_9VIRU/2-118      AC D3HTY4.1
#=GS C9XIB2_9VIRU/20-104     AC C9XIB2.1
#=GS G1C5E5_9VIRU/14-129     AC G1C5E5.1
#=GS A0A0M4ARA7_9VIRU/2-118  AC A0A0M4ARA7.1
#=GS Q7T476_9VIRU/33-149     AC Q7T476.1
#=GS A5H1F9_9VIRU/2-120      AC A5H1F9.1
#=GS A0A1L4AB17_9VIRU/3-117  AC A0A1L4AB17.1
#=GS Q14RT6_9VIRU/2-116      AC Q14RT6.1
#=GS H2DQG9_9VIRU/5-121      AC H2DQG9.1
#=GS A5H1F6_9VIRU/2-118      AC A5H1F6.1
#=GS A7LIE3_9VIRU/2-117      AC A7LIE3.1
#=GS Q807X5_9VIRU/2-118      AC Q807X5.1
#=GS Q7T471_9VIRU/2-117      AC Q7T471.1
#=GS E7BND2_9VIRU/24-140     AC E7BND2.1
#=GS A0A0U1WT49_9VIRU/2-118  AC A0A0U1WT49.1
A0A191KVK2_9VIRU/2-117             ......TIKYKNNKGVTFIVNVYVQE-ARINCKIQMTANKEAYVSSTTYDIPYSFEEVIIP....FDFNGTEEQIANAIKQIFNGINYREMRHEDIVDAIDMVMAENENMIGMQIIEPHRIKTKTSV....
E7BNB9_9VIRU/2-118                 ......TRFSRTREGIVIREDVRDKQQQRASVHKYISSAKWSSHITKAFIVDYAYQQLHIP....FDFTGVEGEITSTFKFHYWGSKAEEILEEDIIHVVDIIIMENPDIMVMEVNEPVIIDSNII-i...
B1B3G7_9VIRU/2-116                 ......TITYNNGWGLKFTIDVRLQP--TLRVMVKVFSTNQPVMACFNCTIPYTYVEMVPP....LDFNGTEEAIKNRLEIMYHDSNIFDFKEEEMLDTIDALMLERFNEMGIDTLGHCFIRCKFAV....
I3QBA1_9VIRU/2-117                 ......TINYRNSKGVEFKIEVHLIT-ETVRCIIRVATTREPNMMNRRFIIPYSYDQIIAP....FDFNGTEEEIKTALINRYRDTGYSAIREEDIVEIVDMVIAENTGLHGLQIIEPYQFRQNFG-v...
A0A1P8JPQ3_9VIRU/2-118             ......TIEYRNNKGLGFIIDVRRQGAKFVMVKIRFSSTRSPALIKRRINIPYGHDGIIIP....FDFNGLETGIRDMIETLFKDTAMEEFRVEEMIEMIDLLMMQDANVENINLDVEYDVTNNTS-a...
A9NJ54_9VIRU/2-118                 ......TIKYNNKRGMEFTIDVKINEDNSILVHIELFSTQSPALVKKNFMIPYGHDGIIPP....FDFNALEEGIQNLLQIMYKDSDIGEFRQEDMVETIDLLMMEEAPLVDIRIGDEYDVCTKVCV....
C1IW25_9VIRU/10-126                ......TITYDNKRGMEFTVNVRLSNNYSIIVQVDLVSTRSPALAKTKFLIPYGHHGFTGP....FDFNRLEERVCQLLKVMYKDKHTGEFRQEDMVETIDILMMHEAPVIDINIHDLYSVYTRASV....
Q2VU50_9VIRU/2-89                  ......TRSGTNKQGVKFTVDVRIMENMKIFIHIRIVSTMSPALIRYEGIVKYTYGDMHVP....FDFNGFEGNIIANFLFANNGAKIEEIEIEDIVQ-----------------------------....
Q7T470_9VIRU/2-116                 ......TIIYNNGNGIKFIIDVRLQQ--FIRVQVQVYSTNQPVLTGIRCNIPYTYVQMVPP....FDFNGTEELVRDTLELMYDDSDISNFKQEEMIDSIDMVMMHWLSDMGVDTVDRYVVRNTYTV....
Q49LL7_9VIRU/2-118                 ......TRSGTTKQGVRFTVDVRIMEDMKIFIHMRLVSTKSSAIIKYEGIVKYTYGDMHVP....FDFNGFEGNIIANFLFANNGAKIDEIEIEDIIQRLDILVLENPDILGINVIEPYVFNKTFTV....
B0JEU4_9VIRU/3-117                 ...itk--KTSSGKLLQLSVNVF---DSKFIVLLHITDTKSPQIQLQKIKLPYSFNSDDLL....INVTGLEEELMQHLSLICDEHVPSKVYTDYLISAIDILILENSQELGLQVLEPCVVTITYTV....
C3VIY0_9VIRU/5-119                 ......TITYKNTKGVKFIIDVRLCP--RLNVQVTMISTKEPILSKATYTLPYNHNEIEEP....FDFNGTEEAIRNTIQVMVHDIPFNDIKSEDILDSIDITMMDRFVFIDLDTGGTCKTRCICT-l...
E5Q3H4_9VIRU/2-117                 ......TITYKNNRGVTFKINVYLQE-ARINCDIQVTANKEAYVSTSTYNIPYSFEEVIIP....FDFNGTEEQIANAIAQIFNGLHYREMRQEDIVEAIDMIMAENENVLGIQIIEPHRVKIKISV....
H9LCS6_9VIRU/2-118                 ......TIKYNNERGMEFTINVKITNDNSLMVHVDLTSTRSPALAKAKFRIPYGHHGFVGP....FDFNSIEEGICHLLMLMYKDSTIREFRREDMVESIDMLMMNEAPVVNIDVIGEYDMDINAHV....
D3HTY4_9VIRU/2-118                 ......TTSGTNKEGVRFIVDVRIMENMKIFIHMRILSTKSPSLIKYEGIVQYTYEDIHVP....FDFNGFEGSIIANFLFAYNGAKIEEIEIEDIVHRLDILVLENPEILGMDVIEPYIFNKKFTV....
C9XIB2_9VIRU/20-104                ......TIKHTTNKGIKFTIDAKLNE--CFKIIVQVTRTNRNIITKHTYTMYYGYGAILVP....FDFNGLETQIRNTIEVMFHD--IDHFKPEDMI------------------------------gg..
G1C5E5_9VIRU/14-129                ......TITHTTNKGIRFVFSLQKKQ-EHFLVTVKVINTSSPVLSKHTYKIRYDYQWNAVP....FDFNGLETSMKNTIEVLYHDSSYNDFKEENMIDAIDTIMFDTNMILGVEIIEPHTCTT----srii
A0A0M4ARA7_9VIRU/2-118             ......TRSGTTKEAVRFTVDVRIMENMKIFIHMSLVSTKSPAIIKYEGIVKYTYGDMHVP....FDFNGFEGNIIANFLFAYNGAKIQEIEIEDIVQRLDIIVLENPEILGMDVIEPYVFNKKFTV....
Q7T476_9VIRU/33-149                ......TIKYNNEKGMEFRIDVKINEDNSILVLVELCSTRSPALAKKTFMIPYGHDGIIPP....FDFNILEEGIHNILKVMYKDSRIGEFRQEDMVETIDMLMMHEASVIDIRIADEYDVCTNVCV....
A5H1F9_9VIRU/2-120                 ......TIRYQTSKNIHFTIDVHLKN--RVTVTIRLIYTRSPVMTAITYNIPYTAEENIPPpiitSERDGAEDHIHHILYAIYDDVDIKDFKPEMMLDAVDIMMMDRFDHIGIDTDGSCRIRTIHNV....
A0A1L4AB17_9VIRU/3-117             htattl-------TMIKFTTNTTLPSPNICIIKLEITSANQPYLVKHKISIPYTYRDIITP....FDLQGNDTLISLALRFAFNAKEYGELKIEDIIELVDLMVLQNDSFVDIDVEASYTNRR----tit.
Q14RT6_9VIRU/2-116                 ......TITYNNGKGVTFTINVRISP--NLKVHLRMLCTNEPVMSRYNYILPYEHEDIFPP....FDINGTEEAVKETIRIMTEGVYFKDITKEELLDSIDTMMIERFQFIELDTKGVTSVTSRCT-l...
H2DQG9_9VIRU/5-121                 ......TITYTNQKGLVFIINVKLRGADSIIVHIRLFATRSPVLVKRQFTIPYGHDGIVPP....FDFNTLEEEIRSMLHIMYRDTTFDAFRHEDMTELVDILIMNEAPVVNIQVFDEYDVCTNVC-a...
A5H1F6_9VIRU/2-118                 ......TIRCTTNKGLSFIINVRLRSNTEISTEIQFFSTKTPFLQKQTFRIPYRHQGIIAP....FNFNQLEEGIKNLLNIMYTDAPQEDFRYEDMIEAIDILMMHEAPVIDINLGEEFMINSSTT-m...
A7LIE3_9VIRU/2-117                 ......TITFRSTKGVHFRVDVFLKD-DHIDCRIEVTATKEAYLRKSTFIIPYNFADVFIP....FDFNGSEEEIMNGLKNMFKDTTHQMIKTEELVEVVDMIMAENLNILGMELINHYRIINKSSV....
Q807X5_9VIRU/2-118                 ...ars---GINTQGVRFTVDVRIMEGMRLFIHMKLVSTRTPAIIKYEGIVKYTYGDLLIP....FDFNGFETNIIANFLFAYNGAKIEKIDIVDIVERLDIFVLENHEIMGMDVIEPYVFNKTFTV....
Q7T471_9VIRU/2-117                 ......TITLRNTKGVHFRVDVFLKD-DHIDCKIEVTATKESYLRKSTFIIPYHFADVFIP....FDFNGSEEEIMHGLRNMFKDTTHQMIRTEELVDVVDMVMAENVNVLGMELINHYRIINKSSV....
E7BND2_9VIRU/24-140                ......TRFSKNREGIVFKVDVRLMQQQRISVQMQISSTRSPAISTKTFIIDYTYQQLHIP....FDFNGLEGTITSTFKFHYWGSKAEEILEEDIIHMVDIIIIENPEIMGMDVNEPVTIDNKII-i...
A0A0U1WT49_9VIRU/2-118             ......TRSGTNKQGVRFTVDVRIMEGMKIFIHMRLVSTKSPALIKYEGIVKYTYGDMHVP....FDFNGFEGNIIANFLFAYNGAKIQEIEIEDIVQRLDIIVLENPEILGMDVIEPYTFNKKFTV....
#=GC seq_cons                      ......TIphpNp+GlcFplDV+lpp..plhlclclsST+pPslhKtpahIPYsapslhsP....FDFNGhEppIpsslphhapssphp-h+pEDhl-tlDhlhh-pssllslclh-.aphppphs.....
//
DBGET integrated database retrieval system