#=GF ID Phage_CI_repr
#=GF AC PF07022.15
#=GF DE Bacteriophage CI repressor helix-turn-helix domain
#=GF AU Moxon SJ;0000-0003-4644-1816
#=GF AU Bateman A;0000-0002-6982-4660
#=GF SE Pfam-B_11145 (release 10.0)
#=GF GA 21.80 21.80;
#=GF TC 21.80 21.80;
#=GF NC 21.70 21.70;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq
#=GF TP Domain
#=GF CL CL0123
#=GF RN [1]
#=GF RM 2370665
#=GF RT Control of gene expression in the temperate coliphage 186. VIII.
#=GF RT Control of lysis and lysogeny by a transcriptional switch
#=GF RT involving face-to-face promoters.
#=GF RA Dodd IB, Kalionis B, Egan JB;
#=GF RL J Mol Biol 1990;214:27-37.
#=GF DR INTERPRO; IPR010744;
#=GF DR SO; 0000417; polypeptide_domain;
#=GF CC This family consists of several phage CI repressor proteins and
#=GF CC related bacterial sequences. The CI repressor is known to
#=GF CC function as a transcriptional switch, determining whether
#=GF CC transcription is lytic or lysogenic [1].
#=GF SQ 625
#=GS A0A0F5VH12_9GAMM/16-80 AC A0A0F5VH12.1
#=GS E5FFF8_9CAUD/10-73 AC E5FFF8.1
#=GS A0A0Q1BHR6_9SPHI/10-71 AC A0A0Q1BHR6.1
#=GS A0A329MUI7_9FLAO/27-87 AC A0A329MUI7.1
#=GS A0A1Y6KWI9_9GAMM/24-88 AC A0A1Y6KWI9.1
#=GS F0JEZ7_DESDE/7-71 AC F0JEZ7.1
#=GS A0A5M6IFR8_9PROT/71-136 AC A0A5M6IFR8.1
#=GS A0A5J5G1V3_9GAMM/8-71 AC A0A5J5G1V3.1
#=GS Q72B82_DESVH/8-72 AC Q72B82.1
#=GS A0A1M4SBT9_9FLAO/9-73 AC A0A1M4SBT9.1
#=GS A0A2U3N333_9GAMM/4-66 AC A0A2U3N333.1
#=GS A0A1E7YVZ8_9GAMM/13-77 AC A0A1E7YVZ8.1
#=GS A0A1M5BWH5_9BACE/9-72 AC A0A1M5BWH5.1
#=GS Q72BT7_DESVH/474-537 AC Q72BT7.1
#=GS Q0EWA5_9PROT/3-46 AC Q0EWA5.1
#=GS B6WR21_9DELT/9-73 AC B6WR21.1
#=GS E6STM2_BACT6/10-71 AC E6STM2.1
#=GS A0A1Y4RLH5_9FIRM/8-69 AC A0A1Y4RLH5.1
#=GS S7U2W7_9DELT/30-94 AC S7U2W7.1
#=GS A0A2S1SKN2_9FLAO/11-75 AC A0A2S1SKN2.1
#=GS A0A1E7Z270_9GAMM/14-78 AC A0A1E7Z270.1
#=GS E0SF14_DICD3/14-75 AC E0SF14.1
#=GS B8DIV4_DESVM/6-70 AC B8DIV4.1
#=GS A0A5C6HPS0_9BACT/8-71 AC A0A5C6HPS0.1
#=GS B0UNX1_METS4/7-71 AC B0UNX1.1
#=GS R5C6G7_9BACE/7-71 AC R5C6G7.1
#=GS A0A080KJY5_9GAMM/11-75 AC A0A080KJY5.1
#=GS Q72E96_DESVH/36-100 AC Q72E96.1
#=GS A0A1M5VSI7_9VIBR/16-77 AC A0A1M5VSI7.1
#=GS A0A080K8X2_9GAMM/1-43 AC A0A080K8X2.1
#=GS A0A2S8A913_9FLAO/73-134 AC A0A2S8A913.1
#=GS A0A4S4A4I1_9FLAO/11-75 AC A0A4S4A4I1.1
#=GS A0A1Y1S2V6_9SPIO/7-69 AC A0A1Y1S2V6.1
#=GS J0UWK1_9HELI/5-39 AC J0UWK1.1
#=GS F3Z2V1_DESAF/14-68 AC F3Z2V1.1
#=GS A0A0A4ABS9_9GAMM/14-78 AC A0A0A4ABS9.1
#=GS A0A2T3MSK1_9GAMM/23-87 AC A0A2T3MSK1.1
#=GS A0A086G9S0_9GAMM/13-77 AC A0A086G9S0.1
#=GS Q1QMW3_NITHX/19-83 AC Q1QMW3.1
#=GS H1ZC07_MYROD/6-68 AC H1ZC07.1
#=GS A0A2I7SF41_9FLAO/6-67 AC A0A2I7SF41.1
#=GS A0A1H4AV07_9FLAO/10-71 AC A0A1H4AV07.1
#=GS A0A3A9HE29_9FIRM/10-66 AC A0A3A9HE29.1
#=GS V5AZZ6_ENTCL/5-66 AC V5AZZ6.1
#=GS A0A286IBX5_9RHIZ/12-75 AC A0A286IBX5.1
#=GS X2KPM6_9CAUD/5-68 AC X2KPM6.1
#=GS F3PV08_9BACE/13-75 AC F3PV08.1
#=GS A0A5S5C753_9FLAO/9-73 AC A0A5S5C753.1
#=GS Q6N343_RHOPA/23-87 AC Q6N343.1
#=GS A0A089PSY5_9ENTR/12-77 AC A0A089PSY5.1
#=GS Q8EJ32_SHEON/19-83 AC Q8EJ32.1
#=GS A0A2N7DA14_9VIBR/7-61 AC A0A2N7DA14.1
#=GS A0A482J8J6_9CAUD/27-91 AC A0A482J8J6.1
#=GS A0A1I1PCG2_9FIRM/6-61 AC A0A1I1PCG2.1
#=GS B3C934_9BACE/13-75 AC B3C934.1
#=GS A0A0B3BQF5_9PSED/1-52 AC A0A0B3BQF5.1
#=GS S7VEN1_DESML/8-72 AC S7VEN1.1
#=GS R9KSV7_9FIRM/2-67 AC R9KSV7.1
#=GS A0A1K1NUK2_9FLAO/29-90 AC A0A1K1NUK2.1
#=GS W4UWT8_9BACE/5-67 AC W4UWT8.1
#=GS A0A1H5VI62_9BACT/9-68 AC A0A1H5VI62.1
#=GS A0A653FV90_9CAUD/1-32 AC A0A653FV90.1
#=GS A0A372FUE5_9ACTN/5-62 AC A0A372FUE5.1
#=GS A0A218M4J1_9CAUD/43-107 AC A0A218M4J1.1
#=GS A0A5C0CGH3_9CAUD/10-72 AC A0A5C0CGH3.1
#=GS A0A4S4GKJ3_9BACT/5-67 AC A0A4S4GKJ3.1
#=GS Q1MQJ6_LAWIP/27-91 AC Q1MQJ6.1
#=GS E6W350_DESIS/6-69 AC E6W350.1
#=GS F3YUG2_DESAF/6-70 AC F3YUG2.1
#=GS A0A1M6EVM4_9BACT/3-68 AC A0A1M6EVM4.1
#=GS A0A5K7ZCL3_9DELT/88-152 AC A0A5K7ZCL3.1
#=GS A0A4Z0KS37_SALET/20-84 AC A0A4Z0KS37.1
#=GS H1XPY1_9BACT/8-70 AC H1XPY1.1
#=GS A0A5N7MUF7_9RHIZ/9-73 AC A0A5N7MUF7.1
#=GS D3V9L3_XENNA/18-82 AC D3V9L3.1
#=GS E5Y2Y1_BILW3/12-76 AC E5Y2Y1.1
#=GS Q30SE8_SULDN/6-70 AC Q30SE8.1
#=GS A0A3N9TI99_9VIBR/17-81 AC A0A3N9TI99.1
#=GS A0A1H8RSN7_9GAMM/9-71 AC A0A1H8RSN7.1
#=GS D4DWV7_SEROD/110-174 AC D4DWV7.1
#=GS A0A4P8YFS8_9ENTR/14-78 AC A0A4P8YFS8.1
#=GS Q218Q8_RHOPB/94-150 AC Q218Q8.1
#=GS A0A482II98_9CAUD/13-77 AC A0A482II98.1
#=GS R4T9W4_9CAUD/15-83 AC R4T9W4.1
#=GS A0A1K1NGL7_9FLAO/19-77 AC A0A1K1NGL7.1
#=GS A0A1K1LX74_9PROT/7-70 AC A0A1K1LX74.1
#=GS A0A377I2X9_HAEPH/6-70 AC A0A377I2X9.1
#=GS Q30ZW9_DESAG/8-72 AC Q30ZW9.1
#=GS F4LP15_TREBD/5-68 AC F4LP15.1
#=GS A0A246AFY2_9SPHI/5-70 AC A0A246AFY2.1
#=GS B8DJI7_DESVM/7-71 AC B8DJI7.1
#=GS D4DNU2_NEIEG/13-73 AC D4DNU2.1
#=GS A0A1Y6ITM8_9VIBR/18-82 AC A0A1Y6ITM8.1
#=GS A0A328TNZ6_9GAMM/1-49 AC A0A328TNZ6.1
#=GS A0A0J8YD86_9GAMM/1-42 AC A0A0J8YD86.1
#=GS A0A1X7QDX6_AZOLI/45-108 AC A0A1X7QDX6.1
#=GS E5YAK7_BILW3/3-67 AC E5YAK7.1
#=GS A0A1M4Y2Z8_9GAMM/9-72 AC A0A1M4Y2Z8.1
#=GS A0A3P2A9X9_9BACE/13-75 AC A0A3P2A9X9.1
#=GS F5YI55_TREPZ/18-72 AC F5YI55.1
#=GS A0A4R1YVM5_9RHOB/32-95 AC A0A4R1YVM5.1
#=GS A0A1X1EZ27_PANCY/14-78 AC A0A1X1EZ27.1
#=GS A0A1I7G2Q4_9BACT/3-68 AC A0A1I7G2Q4.1
#=GS A6TE86_KLEP7/12-76 AC A6TE86.1
#=GS U2K899_9FIRM/11-77 AC U2K899.1
#=GS R9U2Q5_9CAUD/1-61 AC R9U2Q5.1
#=GS G7UQJ0_PSEUP/5-58 AC G7UQJ0.1
#=GS I4A0C2_ORNRL/6-67 AC I4A0C2.1
#=GS A0A2A2GD44_9BACT/3-65 AC A0A2A2GD44.1
#=GS A0A1M5VSB0_9VIBR/18-82 AC A0A1M5VSB0.1
#=GS A0A0Q5UPP6_9FLAO/27-90 AC A0A0Q5UPP6.1
#=GS A0A090V2G6_PSEVU/31-103 AC A0A090V2G6.1
#=GS A0A374VAC4_9BACE/6-71 AC A0A374VAC4.1
#=GS A0A5R9KNG3_9RHIZ/9-73 AC A0A5R9KNG3.1
#=GS E5Y822_BILW3/6-70 AC E5Y822.1
#=GS A0A329MZQ0_9FLAO/29-92 AC A0A329MZQ0.1
#=GS L0M3K8_ENTBF/8-71 AC L0M3K8.1
#=GS B8DIY5_DESVM/579-639 AC B8DIY5.1
#=GS S7TEY0_9DELT/8-72 AC S7TEY0.1
#=GS A0A1S1NVX6_9GAMM/1-58 AC A0A1S1NVX6.1
#=GS A0A482J5A0_9CAUD/27-91 AC A0A482J5A0.1
#=GS E4T1G2_PALPW/5-67 AC E4T1G2.1
#=GS A4WEP1_ENT38/16-80 AC A4WEP1.1
#=GS A0A0M5IYN1_9DELT/10-74 AC A0A0M5IYN1.1
#=GS S7TEZ6_9DELT/8-72 AC S7TEZ6.1
#=GS A0A5K7YQ48_9DELT/8-70 AC A0A5K7YQ48.1
#=GS A0A1T4X6Z1_9DELT/18-82 AC A0A1T4X6Z1.1
#=GS A0A0X3ASL7_9FLAO/10-71 AC A0A0X3ASL7.1
#=GS A0A2I7CC75_9ENTR/1-24 AC A0A2I7CC75.1
#=GS Q88FG3_PSEPK/8-82 AC Q88FG3.1
#=GS A0A3N2MQH5_9BACT/5-67 AC A0A3N2MQH5.1
#=GS A0A0R6PCY1_9CAUD/11-47 AC A0A0R6PCY1.1
#=GS A0A511X8U9_9PROT/28-93 AC A0A511X8U9.1
#=GS A0A329MU66_9FLAO/7-69 AC A0A329MU66.1
#=GS A0A1G6A329_9DELT/5-68 AC A0A1G6A329.1
#=GS A0A014MD65_9GAMM/14-78 AC A0A014MD65.1
#=GS C4XKE8_DESMR/16-79 AC C4XKE8.1
#=GS E5Y2J9_BILW3/6-70 AC E5Y2J9.2
#=GS A0A1T4VWD7_9DELT/24-88 AC A0A1T4VWD7.1
#=GS V4NGP7_9CAUL/19-83 AC V4NGP7.1
#=GS A0A378E6K1_KLEPR/1-56 AC A0A378E6K1.1
#=GS A0A3D9UGD8_9GAMM/9-73 AC A0A3D9UGD8.1
#=GS A0A4S3MKR8_9RHOB/7-58 AC A0A4S3MKR8.1
#=GS M1WRP6_PSEP2/18-82 AC M1WRP6.1
#=GS Q8A3M2_BACTN/14-76 AC Q8A3M2.1
#=GS B6BJJ8_SULGG/20-75 AC B6BJJ8.1
#=GS W6KLV9_MAGSQ/14-77 AC W6KLV9.1
#=GS A0A3R9AKS6_9GAMM/99-162 AC A0A3R9AKS6.1
#=GS A0A0A8VBY8_YERRU/9-73 AC A0A0A8VBY8.1
#=GS A0A2C8F3F0_9DELT/11-75 AC A0A2C8F3F0.1
#=GS A0A1E3L4M7_9BACL/6-70 AC A0A1E3L4M7.1
#=GS A0A374V9R0_9BACE/5-67 AC A0A374V9R0.1
#=GS A0A2U0HVD7_9FLAO/7-70 AC A0A2U0HVD7.1
#=GS A0A2V1ILQ1_9BACT/8-70 AC A0A2V1ILQ1.1
#=GS Q728B8_DESVH/9-72 AC Q728B8.1
#=GS A0A0F4QU52_9GAMM/7-71 AC A0A0F4QU52.1
#=GS A0A0Q9EGE8_9GAMM/1-55 AC A0A0Q9EGE8.1
#=GS A0A514TWW9_9CAUD/17-81 AC A0A514TWW9.1
#=GS A0A1B7X8Y8_9DELT/6-70 AC A0A1B7X8Y8.1
#=GS A0A0J1H8G0_9GAMM/18-82 AC A0A0J1H8G0.1
#=GS A0A0Q7HQM2_9RHIZ/7-58 AC A0A0Q7HQM2.1
#=GS F0RS69_SPHGB/6-67 AC F0RS69.1
#=GS A0A0G4JRS3_9GAMM/6-69 AC A0A0G4JRS3.1
#=GS A0A2S8A719_9FLAO/5-67 AC A0A2S8A719.1
#=GS A0A2S8A923_9FLAO/73-134 AC A0A2S8A923.1
#=GS U2S4S2_9FIRM/11-68 AC U2S4S2.1
#=GS A0A2T5C9Z1_9DELT/5-68 AC A0A2T5C9Z1.1
#=GS Q30X53_DESAG/6-70 AC Q30X53.1
#=GS A0A1G5I4P4_9DELT/5-68 AC A0A1G5I4P4.1
#=GS A0A1M5SFY9_9DELT/7-70 AC A0A1M5SFY9.1
#=GS A0A2D2B081_9CAUL/5-70 AC A0A2D2B081.1
#=GS A0A374VEF5_9BACE/9-71 AC A0A374VEF5.1
#=GS A0A1V2S8Z0_9BACI/8-71 AC A0A1V2S8Z0.1
#=GS A0A3N2KQI0_9BACT/8-69 AC A0A3N2KQI0.1
#=GS A0A2M8RY42_9PAST/6-73 AC A0A2M8RY42.1
#=GS Q8A2V9_BACTN/9-71 AC Q8A2V9.1
#=GS A0A3L7LSS9_9GAMM/19-79 AC A0A3L7LSS9.1
#=GS G1UX03_9DELT/17-81 AC G1UX03.1
#=GS R9VJF0_9ENTR/98-162 AC R9VJF0.1
#=GS A0A1M5BIZ9_9BACE/9-72 AC A0A1M5BIZ9.1
#=GS A0A1Y6ITL6_9VIBR/18-82 AC A0A1Y6ITL6.1
#=GS A0A512H929_9PROT/7-69 AC A0A512H929.1
#=GS A0A089WRZ4_9PSED/8-72 AC A0A089WRZ4.1
#=GS A0A085AR19_9ENTR/5-67 AC A0A085AR19.1
#=GS E0SF14_DICD3/103-167 AC E0SF14.1
#=GS A0A3N2M1V6_9BACT/8-69 AC A0A3N2M1V6.1
#=GS W1IZ51_9GAMM/9-73 AC W1IZ51.1
#=GS B8GS48_THISH/22-86 AC B8GS48.1
#=GS M1WXW4_PSEP2/7-71 AC M1WXW4.1
#=GS Q9XJF9_9CAUD/16-80 AC Q9XJF9.1
#=GS A0A369CI12_9GAMM/10-74 AC A0A369CI12.1
#=GS F0IFL2_9FLAO/9-73 AC F0IFL2.1
#=GS A0A1G6A4Y4_9DELT/34-98 AC A0A1G6A4Y4.1
#=GS A0A370XCX3_9GAMM/26-89 AC A0A370XCX3.1
#=GS C6BVH4_DESAD/7-71 AC C6BVH4.1
#=GS A0A1T4WUV2_9GAMM/9-75 AC A0A1T4WUV2.1
#=GS A0A1I1TED7_9GAMM/13-75 AC A0A1I1TED7.1
#=GS A0A0J9B6C4_9GAMM/13-77 AC A0A0J9B6C4.1
#=GS A0A329MX55_9FLAO/34-95 AC A0A329MX55.1
#=GS I8XIW9_9BACE/5-71 AC I8XIW9.1
#=GS G1USL3_9DELT/1-50 AC G1USL3.1
#=GS A0A1M7Y132_9DELT/17-81 AC A0A1M7Y132.1
#=GS A0A3R9FQH1_9VIBR/18-82 AC A0A3R9FQH1.1
#=GS A0A0F5ASG8_9GAMM/18-82 AC A0A0F5ASG8.1
#=GS A0A376BW90_9NEIS/6-71 AC A0A376BW90.1
#=GS H1XPZ2_9BACT/13-74 AC H1XPZ2.1
#=GS D5BYG1_NITHN/9-72 AC D5BYG1.1
#=GS A0A1I4WZW0_9ENTR/26-90 AC A0A1I4WZW0.1
#=GS A0R7S5_PELPD/8-72 AC A0R7S5.1
#=GS A0A174HN57_9BACE/9-72 AC A0A174HN57.1
#=GS A0A2I5TL47_SERS3/84-148 AC A0A2I5TL47.1
#=GS A0A2C8F9R9_9DELT/18-82 AC A0A2C8F9R9.1
#=GS A0A329N0K3_9FLAO/21-85 AC A0A329N0K3.1
#=GS A0A1M6P4B3_9FLAO/6-67 AC A0A1M6P4B3.1
#=GS A0A515ES67_9BURK/5-69 AC A0A515ES67.1
#=GS G1UXD7_9DELT/11-73 AC G1UXD7.1
#=GS A0A1Y6IVL7_9VIBR/16-80 AC A0A1Y6IVL7.1
#=GS A0A2P8KL91_9BURK/7-65 AC A0A2P8KL91.1
#=GS A0A1W6SQ56_9PROT/20-83 AC A0A1W6SQ56.1
#=GS A0A238XK09_9DELT/14-78 AC A0A238XK09.1
#=GS R7MLD2_9FIRM/2-67 AC R7MLD2.1
#=GS W0HGU8_9GAMM/19-82 AC W0HGU8.1
#=GS A0A4Q1JUD3_9GAMM/14-79 AC A0A4Q1JUD3.1
#=GS A0A328TJY3_9GAMM/1-63 AC A0A328TJY3.1
#=GS A0A1G8WBG6_9FLAO/11-74 AC A0A1G8WBG6.1
#=GS A0A1E5D6F7_9VIBR/17-81 AC A0A1E5D6F7.1
#=GS A0A1M5VRT0_9VIBR/18-82 AC A0A1M5VRT0.1
#=GS A0A0J6SL08_9RHIZ/9-73 AC A0A0J6SL08.1
#=GS A0A3A8Z4N1_9BACT/7-72 AC A0A3A8Z4N1.1
#=GS A0A1H6KPX6_9FLAO/6-69 AC A0A1H6KPX6.1
#=GS A0A1T4VG27_9DELT/14-78 AC A0A1T4VG27.1
#=GS A0A1N7LSK4_9PROT/11-75 AC A0A1N7LSK4.1
#=GS A0A3M8FVL9_9BACT/25-88 AC A0A3M8FVL9.1
#=GS T2G9Z2_DESGG/6-70 AC T2G9Z2.1
#=GS G1UU50_9DELT/11-75 AC G1UU50.1
#=GS A0A4R1NHQ4_9GAMM/8-72 AC A0A4R1NHQ4.1
#=GS S7VAE9_9DELT/5-69 AC S7VAE9.1
#=GS E6X2T8_NITSE/6-74 AC E6X2T8.1
#=GS A0A3R9AKS6_9GAMM/10-72 AC A0A3R9AKS6.1
#=GS D4E8K7_SEROD/9-73 AC D4E8K7.1
#=GS A0A0B5RJJ1_9FLAO/6-69 AC A0A0B5RJJ1.1
#=GS A0A238HH51_9NEIS/2-66 AC A0A238HH51.1
#=GS A0A3P1ZU97_9DELT/18-82 AC A0A3P1ZU97.1
#=GS R9VL55_9ENTR/14-78 AC R9VL55.1
#=GS D2U111_9GAMM/13-77 AC D2U111.1
#=GS G1JX49_9CAUD/15-83 AC G1JX49.1
#=GS M1Z8N9_NITG3/5-69 AC M1Z8N9.1
#=GS A0A0J9BEP4_9GAMM/13-77 AC A0A0J9BEP4.1
#=GS C4ZCD4_AGARV/2-69 AC C4ZCD4.1
#=GS A0A0P1GFX7_9RHOB/9-50 AC A0A0P1GFX7.1
#=GS A0A4R5UKB7_9RHIZ/53-117 AC A0A4R5UKB7.1
#=GS A0A1J7CXQ5_9GAMM/12-76 AC A0A1J7CXQ5.1
#=GS E0SAL5_DICD3/119-183 AC E0SAL5.1
#=GS R9MV93_9FIRM/8-73 AC R9MV93.1
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