GenomeNet

Database: Pfam
Entry: Phycoerythr_ab
LinkDB: Phycoerythr_ab
Original site: Phycoerythr_ab 
#=GF ID   Phycoerythr_ab
#=GF AC   PF02972.14
#=GF DE   Phycoerythrin, alpha/beta chain
#=GF PI   phycoerythr_ab; 
#=GF AU   Griffiths-Jones SR;0000-0001-6043-807X
#=GF SE   Structural domain
#=GF GA   22.50 22.50;
#=GF TC   23.60 28.00;
#=GF NC   21.80 15.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 45638612 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   Phycoerythrin
#=GF RN   [1]
#=GF RM   10430868
#=GF RT   Evolution of a light-harvesting protein by addition of new
#=GF RT   subunits and rearrangement of conserved elements: crystal
#=GF RT   structure of a cryptophyte phycoerythrin at 1.63-A resolution. 
#=GF RA   Wilk KE, Harrop SJ, Jankova L, Edler D, Keenan G, Sharples F,
#=GF RA   Hiller RG, Curmi PM; 
#=GF RL   Proc Natl Acad Sci U S A 1999;96:8901-8906.
#=GF DR   INTERPRO; IPR004228;
#=GF DR   SCOP; 1qgw; fa;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family represents the non-globular alpha and beta chain
#=GF CC   components of phycoerythrin.  The structure is a long
#=GF CC   beta-hairpin and a single alpha-helix.
#=GF SQ   21
#=GS L1JQD4_GUITH/58-114   AC L1JQD4.1
#=GS L1JI35_GUITH/59-115   AC L1JI35.1
#=GS L1J0L9_GUITH/41-98    AC L1J0L9.1
#=GS L1I9A0_GUITH/79-127   AC L1I9A0.1
#=GS L1IL79_GUITH/65-121   AC L1IL79.1
#=GS L1JGF5_GUITH/118-158  AC L1JGF5.1
#=GS L1I892_GUITH/78-134   AC L1I892.1
#=GS L1JTP2_GUITH/68-124   AC L1JTP2.1
#=GS L1J044_GUITH/81-140   AC L1J044.1
#=GS L1J381_GUITH/108-164  AC L1J381.1
#=GS L1J5L2_GUITH/45-103   AC L1J5L2.1
#=GS L1J444_GUITH/120-176  AC L1J444.1
#=GS L1IJ73_GUITH/41-98    AC L1IJ73.1
#=GS L1IZT9_GUITH/57-114   AC L1IZT9.1
#=GS L1IYK2_GUITH/64-120   AC L1IYK2.1
#=GS L1J444_GUITH/54-112   AC L1J444.1
#=GS L1K1P5_GUITH/71-127   AC L1K1P5.1
#=GS L1IIS5_GUITH/57-114   AC L1IIS5.1
#=GS L1JDL0_GUITH/44-102   AC L1JDL0.1
#=GS L1J598_GUITH/80-136   AC L1J598.1
#=GS L1IX61_GUITH/45-101   AC L1IX61.1
L1JQD4_GUITH/58-114              ..RAPEITIFDHRGC..SRAPKEYAGAKAGTSDDEMCVKVASTKVEA...SLTLAEKKLQEFLS...............
L1JI35_GUITH/59-115              .l-APVITTFDHQFC..DRAPKEYVGPASGDEDDNRCVKVALSKITV...SETEAAAALQEFIS...............
L1J0L9_GUITH/41-98               ..RAPVITVFDHRGC.tAHANKEYTGAKANSQDDEMLVKAQSVKIEV...SAATADSVLQQTIS...............
L1I9A0_GUITH/79-127              ..AAPVITIFDHRGC.aEHQNKEYTGAPSNDYNDEMLVKVQSVTLK-...--------------rddpkf.........
L1IL79_GUITH/65-121              .y-APVITVFDHRGC..TRAPKEYNGPKSNDMEDGMLVKVESIKCKV...TESYAASLLQEQLG...............
L1JGF5_GUITH/118-158             pr-------------..----AEYTGAKVGTEDDAMCVSVKAKAIPA...NTNLAASILSDF--q..............
L1I892_GUITH/78-134              .y-APEVTIFDHRGC..NRAPKEYKGGKTGDQDDEMLVRVKSVKVFC...PEAEAAKVLASTLS...............
L1JTP2_GUITH/68-124              ..RAPVITIFDHRGC..SRAPKEYTGGLSNTQDDQMCVKAQSLKIEV...SEQTAAKLLQENLS...............
L1J044_GUITH/81-140              ..AMPVITVFDHRGC..SRSPKEYVGDKSGDQDDEMCVKVQMKTPYTypqYTRQATALLNEIIG...............
L1J381_GUITH/108-164             .f-APMITIFDARGC..DRGGVEYKGPKAGTTDDEMLVKVELIGIKV...PEYQAAAFTREQLG...............
L1J5L2_GUITH/45-103              .v-APIITVFDHRGCkrGKADSEYQGALANGPEDEMLVKVAYKKVPL...SAGFADKVLQQTLG...............
L1J444_GUITH/120-176             ..RAPQITIFDHRGC..SRAPKEYTGKRAGTYDDEMLVKIDFKAAEV...NSKLAQQVLEQTIG...............
L1IJ73_GUITH/41-98               ..RAPVVTIFDHRGC.tAHANKEYTGAKANSQDDEMLVKAQSVKIEV...SAATADSVLQQTIS...............
L1IZT9_GUITH/57-114              ..RAPVITIFDHRGC.tAHANKEYTGAKANSQDDEMCVKVASAKIAV...SEGDAAKKLQEFIS...............
L1IYK2_GUITH/64-120              .i-APVITIFDHRGC..DRITKEYQGRKANTYDDYMLVKVKGEVITV...STSTAASVLAETF-g..............
L1J444_GUITH/54-112              .f-APVITIFDNRGC.kEHKNKEYNGPKAGDENDEMLVKVANQKIPF...PTDD----------vvnefrrenla....
L1K1P5_GUITH/71-127              .y-TPIITIFDARGC..PRGAGEYEGSPAGDNNDEMAVKVVLRKLEP...DTGFAEQIKAETLG...............
L1IIS5_GUITH/57-114              ..RAPVITIFDHRGC.tAHANKEYTGAKANSQDDEMCVKVASAKIAV...SEGDAARKLQEFIS...............
L1JDL0_GUITH/44-102              ..RAPVVTVFDHRGCqrGKRNTEYQGLPANSQDDEMLVKVAMQKVAI...NEAAATDLVQQLLG...............
L1J598_GUITH/80-136              .f-APVITVFDHRGC.aEHVNKEYTGPKSNDENDEMLVKVKQTKL--...--------------rrddpkfveladriv
L1IX61_GUITH/45-101              .t-APIVQIFDHRGC..SRVAKEYTGKKCNGAEDEMLVKVQSKVIPA...PEALAASVLQVTV-g..............
#=GC seq_cons                    ...APVITIFDHRGC..s+usKEYsGsKusspDDEMLVKVpstKlts...sps.AsplLpphlu...............
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