#=GF ID TTSSLRR
#=GF AC PF12468.12
#=GF DE Type III secretion system leucine rich repeat protein
#=GF AU Gavin OL;
#=GF SE Prosite
#=GF GA 21.90 21.90;
#=GF TC 21.90 22.40;
#=GF NC 21.70 21.80;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch --cpu 4 -E 1000 -Z 75585367 HMM pfamseq
#=GF TP Repeat
#=GF CL CL0022
#=GF RN [1]
#=GF RM 10564523
#=GF RT Salmonella typhimurium leucine-rich repeat proteins are targeted
#=GF RT to the SPI1 and SPI2 type III secretion systems.
#=GF RA Miao EA, Scherer CA, Tsolis RM, Kingsley RA, Adams LG, Baumler
#=GF RA AJ, Miller SI;
#=GF RL Mol Microbiol. 1999;34:850-864.
#=GF DR INTERPRO; IPR032674;
#=GF DR SO; 0001068; polypeptide_repeat;
#=GF CC This domain family is found in bacteria, and is approximately 50
#=GF CC amino acids in length. There are two completely conserved
#=GF CC residues (Y and W) that may be functionally important. This
#=GF CC family consists of leucine-rich repeat proteins involved in type
#=GF CC III secretion.
#=GF SQ 43
#=GS Q327F8_SHIDS/4-54 AC Q327F8.1
#=GS A0A509D1N4_9ENTR/117-192 AC A0A509D1N4.1
#=GS A0A3N4B5W9_YERPE/1-60 AC A0A3N4B5W9.1
#=GS IPA9_SHIFL/4-48 AC Q8VSC3.2
#=GS A0A3S4GD78_SALBN/107-170 AC A0A3S4GD78.1
#=GS A0A380PKG6_YERPE/1-60 AC A0A380PKG6.1
#=GS W0I1A6_9GAMM/26-70 AC W0I1A6.1
#=GS SLRP_SALTY/107-170 AC Q8ZQQ2.1
#=GS IPA7_SHIFL/4-49 AC P18014.2
#=GS A9MJD9_SALAR/107-172 AC A9MJD9.1
#=GS A0A8J7KVF3_9ENTR/6-68 AC A0A8J7KVF3.1
#=GS Q327F7_SHIDS/4-49 AC Q327F7.1
#=GS A0A8J7L0K2_9ENTR/2-67 AC A0A8J7L0K2.1
#=GS A0A8J7GUC8_9ENTR/15-67 AC A0A8J7GUC8.1
#=GS A0A8J7L1E2_9ENTR/5-67 AC A0A8J7L1E2.1
#=GS E0WV28_9ENTR/20-65 AC E0WV28.1
#=GS Q32I41_SHIDS/4-54 AC Q32I41.1
#=GS YOPM_YERPE/8-63 AC P17778.2
#=GS A0A8J7H984_9ENTR/16-66 AC A0A8J7H984.1
#=GS A0A0H2V170_SHIFL/4-49 AC A0A0H2V170.1
#=GS Q83R64_SHIFL/4-51 AC Q83R64.1
#=GS IPA25_SHIFL/7-63 AC A0A0H2USC0.1
#=GS C5B8F6_EDWI9/17-59 AC C5B8F6.2
#=GS A0A4Z0KQL1_SALET/107-170 AC A0A4Z0KQL1.1
#=GS A0A2X4TUK9_SALER/107-172 AC A0A2X4TUK9.1
#=GS A0A8J7KQ06_9ENTR/16-67 AC A0A8J7KQ06.1
#=GS A0A3N4B6U4_YERPE/1-60 AC A0A3N4B6U4.1
#=GS IPA4_SHIFL/4-54 AC P18009.3
#=GS A0A3S4EX46_SALBN/133-174 AC A0A3S4EX46.1
#=GS IPA3_SHIFL/7-51 AC Q83RJ4.1
#=GS A0A2U8I533_9GAMM/33-79 AC A0A2U8I533.1
#=GS IPA14_SHIFL/7-63 AC A0A0H2USG1.1
#=GS Q32F07_SHIDS/4-51 AC Q32F07.1
#=GS A0A516SFS2_9BURK/91-132 AC A0A516SFS2.1
#=GS IPA9_SHIDS/4-48 AC Q326Z6.2
#=GS Q32F09_SHIDS/7-51 AC Q32F09.1
#=GS A0A0H2UY03_SHIFL/4-54 AC A0A0H2UY03.1
#=GS A0A8J7L1D4_9ENTR/9-72 AC A0A8J7L1D4.1
#=GS E9CQ54_9GAMM/4-65 AC E9CQ54.1
#=GS Q327F0_SHIDS/14-70 AC Q327F0.1
#=GS A0A8J7GU15_9ENTR/4-62 AC A0A8J7GU15.1
#=GS A0A3S4E939_SALBN/11-50 AC A0A3S4E939.1
#=GS Q32D09_SHIDS/4-49 AC Q32D09.1
Q327F8_SHIDS/4-54 ............................................INNHSFFRSLCGLSCISRLSVEEQCT..........---RDYHRIWDDWAREGTT...TE..N..RIQAVR........
A0A509D1N4_9ENTR/117-192 nytvncqgyhethrltldtaqgeectghaegasgtlrtsllpat-------------------------Tt........pQTAAEYYAAWSEWKRAAPE...GE..S..RGRA--eav.....
A0A3N4B5W9_YERPE/1-60 ............................................MYLSNITSNVSMPNIGPDREIHADRPaa......taLTPADYHAIWEKWENDPRTv.aGE..Q..RGQAVA........
IPA9_SHIFL/4-48 ............................................INNNFSLPQNSFYNTIS---------..........GTYADYFSAWDKWEKQALP...GE..E..RDEAVS........
A0A3S4GD78_SALBN/107-170 ......................................itfntd----SYTVECEGETVTYTLEIESEQTkrt....slsREAVDYELIWSDWVNHAPT...DE..ApyRESAV-k.......
A0A380PKG6_YERPE/1-60 ............................................MNLSNITSNVSMPNIEPDREIHSARTst......aaLTPADYYAIWEKWESEAIPg.tDE..Q..RRFAVE........
W0I1A6_9GAMM/26-70 .....................................vsrpprl-------------------TVAEEAS.........gRRQEDYHLIWETWMNNAPPg.sLE..H..RAIA--ce......
SLRP_SALTY/107-170 ............................................IVFNTEGYTVEGGGKSVTYTRVTESEqass..asgsKDAVNYELIWSEWVKEAPAk.eAA..N..REEAVQ........
IPA7_SHIFL/4-49 ............................................VNNTHSSVSCSPSINSNS--------..........TSNEHYLRILTEWEKNSSP...GE..E..RGIAFN........
A9MJD9_SALAR/107-172 ..........................................ii--FNSDSYTVECGGETVTYTRETAGEqassasgpgsKDAVNYDVIWSEWVKSAPT...EEapN..REKAVQ........
A0A8J7KVF3_9ENTR/6-68 ....................nnsnqphvtlpndtptvahtfhsg------------------------SPsqt...ttiiHDDSEYHAVWSSWK-EGAPvggGE..K..RDIAVE........
Q327F7_SHIDS/4-49 ............................................VNNTHSSVSCSPSINSNL--------..........TSNEHYLRILTEWEKNSSP...GE..E..RGIAFN........
A0A8J7L0K2_9ENTR/2-67 ..........................ipasnsnpqhsvlqsdpr------------------QSIDPTNTgqtsqitsspPSKNQYNSIWSAWEKGAAQg.kGE..Q..RDIA--mv......
A0A8J7GUC8_9ENTR/15-67 .................................lintapvmptt-----------------HSSVSTQTTt.......spNNPEEYHAVWTAWEKSSPHg.eGE..K..RDIAVA........
A0A8J7L1E2_9ENTR/5-67 .................snsnpqhsvlqsdptqsidptytghis----------------Q--------Its......spPSKNQYNTIWSAWEKGAAQg.kGE..Q..RDIAV-v.......
E0WV28_9ENTR/20-65 ...............................rvqgiaemensqr-------------------------Lps......ssSDKEALYAEWEQWKRNEPP...GE..K..RAEAVS........
Q32I41_SHIDS/4-54 ...........................................a-HNPSFFRSFCGLGCISHLSVEEQNI..........---TDYHRIWDNWAKEGAA...TE..D..RTQAVR........
YOPM_YERPE/8-63 ............................................VSNTFLQEPLRHSSNLTEMPVEAENV..........KSKTEYYNAWSEWERNAPPg.nGE..Q..REMAVS........
A0A8J7H984_9ENTR/16-66 ......................................idnfet------TPSFQAGSVSQ----STQTE..........PSKEQYQAIWSTWENTAPQg.gGE..L..RNVA--i.......
A0A0H2V170_SHIFL/4-49 ............................................INMLRNISSCLFPHISTI--------..........TSPNHYLSEWDDWEKQGLP...EE..Q..RTEAVR........
Q83R64_SHIFL/4-51 ............................................TNNNHRLISNSFSTYSIDTS------..........RAYENYLTHWTEWKNNRIQ...EE..Q..RDIAFQ........
IPA25_SHIFL/7-63 ............................................IQVIGSGIMHQINNIHSLTLFSLPVSl.......spSCNEYYLKVWSEWERNGTP...GE..Q..RNIAFN........
C5B8F6_EDWI9/17-59 ..................................pascasaasa-------------------------Ta.......gpQTAEEYEAAWSEWERAAPP...EE..-..------aadrantv
A0A4Z0KQL1_SALET/107-170 ...........................................i-IFNTEGYTVEGGGKSVTYTRVTESEqass..asgsKVAVHYELIWSEWVKEAPAe.eAA..N..REEAVQ........
A0A2X4TUK9_SALER/107-172 ...........................................i-IFNSDSYTVECGGEAVTYTRETAGEqassasghgsKDAVNYDVIWSEWVKSAPT...EEapN..REKAVQ........
A0A8J7KQ06_9ENTR/16-67 ...................................tntapvmpt--------------IHS--SVSTQTTt.......spNNPEEYHAVWTAWEKNFPQg.eGE..K..RDIAVA........
A0A3N4B6U4_YERPE/1-60 ............................................MNLSNITSNESMPNIEPDREIHSARTst......aaLTPADYYAIWEKWENDPRTv.aGE..Q..RGQAVA........
IPA4_SHIFL/4-54 ............................................INNHSFFRSLCGLSCISRLSVEEQCT..........---RDYHRIWDDWAREGTT...TE..N..RIQAVR........
A0A3S4EX46_SALBN/133-174 ................................ygahamsgatsl--------------------------..........AQPEAYDAIWSEWQANAPP...EE..A..RN----csqave..
IPA3_SHIFL/7-51 ............................................INNNFSLSQNSFYNTIS---------..........GTYADYFSAWDKWEKQALP...GE..N..RNEAVS........
A0A2U8I533_9GAMM/33-79 ................................sapnshaqmgkt----------------NQTSMKYLMT..........---KEYHQVWHKWANEAVK..eGE..K..RQEA--l.......
IPA14_SHIFL/7-63 ............................................IQAIGSGIMHQINNVYSLTPLSLPMEl.......tpSCNEFYLKTWSEWEKNGTP...GE..Q..RNIAFN........
Q32F07_SHIDS/4-51 ............................................TNNNHRLISNSFSTYSIDTS------..........CAYENYLTHWTEWKNNRIQ...EE..Q..RDIAFQ........
A0A516SFS2_9BURK/91-132 .........................................rhl------------------LEVSQPRTq........pTNNAEYLAEWRDWARQPTP..tHE..D..RRFA--lh......
IPA9_SHIDS/4-48 ............................................INNNFSLPQNSFYNTIS---------..........GTYADYFSAWDKWEKQALP...GE..E..RDEAVS........
Q32F09_SHIDS/7-51 ............................................INNNFSLSQNSFYNTIS---------..........GTYADYFSAWDKWEKQALP...GE..N..RNEAVS........
A0A0H2UY03_SHIFL/4-54 ...........................................a-HNPSFFRSFCGLGCISRLSVEEQNI..........---TDYHRIWDNWAKEGAA...TE..D..RTQAVR........
A0A8J7L1D4_9ENTR/9-72 ............................................IKNNAISHSASLMNTTPALPTASSNRcsrv..vassPRNEEYYAIWTSWEKNAPAg.lGE..Q..RDVAVA........
E9CQ54_9GAMM/4-65 .....................vnnnpdlpvqtylhsatdtpssg-------------------SVSQTATv........pLRPDEYYALWSEWEENAPPg.mGE..K..RDIAVA........
Q327F0_SHIDS/14-70 ............................................IQAIGSGIMHQINNIYSLTPFSSPMEl.......tpSCNEFYLKAWSEWEKNGTP...GE..Q..RNIAFN........
A0A8J7GU15_9ENTR/4-62 ...........................................i-KNESVLYSKSLTDTTPAIAISSQTTt.......seQSELEYYEIWSEWEKNSSQg.mGE..Q..RDVAV-g.......
A0A3S4E939_SALBN/11-50 ...............................iqpaapeslpvdg--------------------------..........---VSYYTLWQTWASEAVAg.aGE..Q..REIAVE........
Q32D09_SHIDS/4-49 ............................................INMLRNISSCLFPHISTI--------..........TSPNHYLSEWDDWEKQGLP...EE..Q..RTEAVR........
#=GC seq_cons ......................................................ph.t..s...................ts.pcYhslWscWc+puss...uE..p..Rs.AVp........
//
