KEGG   Plasmodium falciparum 3D7: PF3D7_1234800
Entry
PF3D7_1234800     CDS       T00095                                 
Name
(RefSeq) splicing factor 3B subunit 3, putative
  KO
K12830  splicing factor 3B subunit 3
Organism
pfa  Plasmodium falciparum 3D7
Pathway
pfa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pfa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PF3D7_1234800
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pfa03021]
    PF3D7_1234800
   03041 Spliceosome [BR:pfa03041]
    PF3D7_1234800
   03036 Chromosome and associated proteins [BR:pfa03036]
    PF3D7_1234800
Transcription machinery [BR:pfa03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     PF3D7_1234800
Spliceosome [BR:pfa03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    PF3D7_1234800
 Complex B
    PF3D7_1234800
 Complex C
   U2 SnRNP specific factors
    PF3D7_1234800
Chromosome and associated proteins [BR:pfa03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    STAGA complex
     PF3D7_1234800
    TFTC complex
     PF3D7_1234800
SSDB
Motif
Pfam: MMS1_N CPSF_A Rep_fac-A_3
Other DBs
NCBI-GeneID: 811388
NCBI-ProteinID: XP_001350742
PlasmoDB: PF3D7_1234800
UniProt: Q8I574
Position
12:join(1452606..1456115,1456245..1456337,1456433..1456579,1456700..1456801,1457090..1457227)
AA seq 1329 aa
MPVLYHLTLQKPTAITKTVYGNFSGPRFHEIIVAKGQVLELLRSDKQGKLNVIISKDIFG
IIRSISTFRLTGSNKDYIVIGSDSGRLVILEYNNEKNDFVRVHCETYGKTGIRRIIPGEY
IAVDPKGRALMICAVEKQKFVYILNRDNKENLTISSPLEAHKSHSICHDVVGLNVGFENP
MFVSIEQNYESLDKQINEELENENDDEDKSDEERKDNNDIINDKNVKDNKDNDFSLDYAK
KVLCFWELDLGLNHVIKKHILPIDITAHLLIPLPGGQQGPSGVLICCENFLVYKKVDHED
IYCAYPRRLEIGQDKNISIICWTMHRIKKFFFILIQSEYGDLYKIEVDHEDGIVKEIVCK
YFDTVPIGNSISVLKSGSLFVAAEFGNHYFYQFSGIGDDNKQFMCTSNHPLGKNAIIAFK
TNKLKNLYLVDQIYSLSPILDMKIIDAKNTHTPQIYTLCGRGPRSSLRILQHGLSIEELA
DNELPGKPKYIWTIKKDNLSEYDGYIVVSFEGNTLILEIGESVEEVSDTLLLNNVTTLHI
NILYDNSFIQVYDTGIRHINGKVVQEWVAPKNKQIKAASSNSSQIVISLSGGELIYFEID
ESHTLVEIFRKNLNVEVLCLSIQQIPPNRVRANFLAVGCLDNVVRLLSIEKDKYFKQLST
HLLPNNSSPQDICISEMNDNGNTMKERNIIFLNIGLNTGVLLRSIIDPVAGTLSNHYSKY
LGAKSIKICPVNVNKNPALLVLCEKTYLCYMHQGKFLYSPLNYDMLEYASSFYSPQCSDG
YVAISSNSLRIFRFYRLGEVFSQNILHLTFTPRKIVPLPFPSLFYDHDSSLELERKKKIR
MLAIIEADHNSYDENTQREIQKALKDIKLSDTERRKENDNENNNIYSNGDVDNIDVNDSA
NMNEEFNSNDNISLAQNHKKDVSYNKEEEQFTDNNKNDTENVIETYENNASLNESNDEEN
EDEYYYDRIGTFKAGQGKWGSCIKIINPVNLQILDKISLDMEEAALSVCACELEALHCLI
VGTTTNLSLKTKSLTSASLRVYTYDIQYKLNLLHITPIEEQPYCFCSYNGKLIASIGNKL
RIYALGKKKLLKKCEYKDIPEAIVSIKISGNRIFACDIRESVLIFFYDPNQNTLRLISDD
IIPRWITCSEILDHHTIMAADKFDSVFILRVPEEAKQDEYGITNKCWYGGEIMNSSTKNR
KLEHMMSFHIGEIVTSMQKVRLSPTSSECIIYSTIMGTIGAFIPYDNKEELELTQHLEII
LRTEKPPLCGREHIFFRSYYHPVQNVVDGDLCEQFSSLSYDAQKKIANDLERTPEDILRK
LEDIRNKIL
NT seq 3990 nt   +upstreamnt  +downstreamnt
atgccagtgttgtatcatctaacattacagaagcctacagcaattaccaagacggtttat
ggtaatttctctggtcctcgatttcatgaaattattgtggctaaaggacaagtacttgag
ttactgagatcagataaacaagggaaattaaatgtgataatttctaaagatatctttggt
attataagaagtatatctacttttcgattaacaggaagtaataaagattatatagttata
ggtagcgattcaggaagattagtaatattagaatataataatgaaaagaatgattttgtt
agagtacattgtgaaacatatggaaagacaggtatcagacgaataatcccaggggaatat
attgctgttgatcctaaaggtagagcattaatgatatgtgctgttgaaaaacagaaattt
gtttatatattaaatagagataataaagaaaatttaaccataagtagtcctttagaagct
cataaatcacattcaatttgtcatgatgttgtcggtttaaatgtaggttttgaaaaccct
atgtttgtatccattgaacagaattatgaatctttagataaacaaataaatgaggaatta
gaaaatgaaaatgacgatgaagataaaagtgatgaagaaaggaaagataataatgatata
ataaatgataaaaatgtgaaggataacaaagataatgattttagtttagattatgcaaag
aaagttttatgcttttgggaattagatttaggtttaaatcatgtaataaaaaaacatatt
ttacctatagatattacagctcatttattaatacctttacctggtgggcaacaagggcca
agtggtgttttgatatgttgtgagaattttttagtttataaaaaagtagatcatgaagat
atttattgtgcttatccaagaagattagaaataggacaagataaaaatatatcaataata
tgttggactatgcatagaataaagaaatttttttttatacttatacaatcagaatatgga
gatttatataaaatagaagtggatcatgaagatggaattgtaaaagaaattgtatgtaaa
tattttgatacagtacctataggaaattcaatatctgttttaaaatctggatcactattt
gttgctgctgaatttggtaatcattatttttatcaattttcaggaattggtgatgataat
aagcagttcatgtgtacatctaatcatccattaggaaaaaatgctataatagcatttaaa
acgaataaattaaaaaatctatatcttgtggatcaaatatattctctttcacctatatta
gatatgaaaataattgatgctaaaaatacacatactccacaaatatatactttatgtgga
agaggtcctagatcttctttacgtatcttacagcatgggttaagtattgaagagctagct
gataatgaattacctggtaaacccaaatatatatggaccataaaaaaagataatttaagt
gaatatgatggatatattgtagttagttttgaaggtaatacattaattttagaaataggt
gaaagtgttgaagaagtatcagatactttattattaaataatgtaactaccctacatatt
aatatattatatgataattcatttattcaagtatatgatacaggtattagacatatcaat
ggtaaagtagtacaagaatgggtagcaccaaaaaataaacaaatcaaagctgcatcatct
aatagttcacaaattgttatatccttaagtggtggagaacttatttattttgaaatcgat
gaatcacatactttagtagaaatatttagaaaaaatctcaacgtagaagtattgtgttta
tctatacaacaaatacccccaaatcgtgtaagagctaactttttagcagtaggttgttta
gataatgttgttagattattatctatagaaaaagataaatatttcaaacaattatctact
catttattaccgaataattcatctccacaagatatatgtatttctgaaatgaatgataat
ggaaataccatgaaagaacgtaatattatttttttaaatattggattgaatacaggtgta
ttattaagaagtattatagatcctgttgctggtaccttaagtaatcattattccaaatat
ttaggagccaaaagtataaaaatatgtcctgtgaatgtaaacaaaaatccagctcttctt
gtactttgtgaaaaaacgtatttatgttatatgcatcaaggaaaattcttatattctcca
ttaaattatgatatgttagaatatgcttcatctttctattcaccacaatgttcagatggt
tatgtagctatatcatctaatagcctgagaatatttcgtttttatagactaggagaggtc
tttagtcaaaacatattacatttgacttttactccacgaaaaatcgtaccattgccattc
ccttcattattttatgatcatgactcatcactagaattagaaagaaaaaaaaagatacgt
atgttagccatcattgaggcagatcacaattcgtatgatgaaaatacgcaaagagaaata
caaaaagctttaaaggatataaaattgagtgatacagaaaggagaaaagaaaatgacaat
gaaaataataatatatattcaaatggtgatgtggataatatagatgtaaatgattccgca
aatatgaatgaagagtttaattcaaatgataatatttcgttagcacaaaatcataaaaaa
gatgtatcatacaataaagaagaagaacaatttacagacaataataaaaatgatacagaa
aatgtaatagagacatatgaaaataatgcatcattaaatgaatcaaatgatgaagaaaat
gaagatgagtattattatgatagaataggtacttttaaagcaggacaaggaaaatggggt
tcatgcataaaaattataaatccagttaatttacagatattagataaaatatctttagat
atggaagaagctgcattaagtgtatgtgcatgcgaattagaagctttacattgtcttatt
gttggtacaacaacaaatttgtcattaaaaacaaaatctcttacatcagcttcattaaga
gtatatacatatgatatacaatataaattgaatttattacatataacacccattgaagaa
cagccatattgtttttgctcatacaatggaaaattgattgcttccattggtaataaatta
agaatatatgctttaggaaaaaaaaagttacttaaaaaatgtgaatataaagatatacca
gaagcaattgtatctatcaaaatttctggaaatcgtatctttgcatgtgacatcagagaa
tctgtgttaatatttttttacgatccaaatcaaaataccttgagattaatttcggatgac
attatcccaagatggataacgtgttctgaaattcttgatcatcatacgattatggcagca
gataaattcgattctgtctttattttgagggttccggaggaggctaaacaagacgaatat
ggtataacaaataaatgttggtatggtggagaaataatgaacagttcaactaaaaacaga
aagctggaacatatgatgagttttcatattggagaaatagtaacgtcaatgcaaaaagtc
agactatctcctaccagcagtgaatgtataatttattcgacgattatgggaacaataggt
gcttttattccatatgataataaagaagagcttgaactcacacaacatttagaaataatt
ttacgaaccgaaaagccccccttatgtggaagagaacacatattttttcgttcatattat
catcctgttcagaacgttgttgatggagatttgtgtgaacaattttcaagcttgtcttat
gatgcgcaaaaaaaaattgcaaatgatttggaaagaactccagaagatattttaagaaaa
ctagaagatataagaaataaaatactttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PLASMODB (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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