GenomeNet

Database: Pfam
Entry: AFP
LinkDB: AFP
Original site: AFP 
#=GF ID   AFP
#=GF AC   PF02420.15
#=GF DE   Insect antifreeze protein repeat
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF SE   [1]
#=GF GA   36.50 2.00;
#=GF TC   45.10 3.60;
#=GF NC   26.60 1.80;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 45638612 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Repeat
#=GF WK   Antifreeze_protein
#=GF DR   INTERPRO; IPR003460;
#=GF DR   SCOP; 1ezg; fa;
#=GF DR   SO; 0001068; polypeptide_repeat;
#=GF CC   This family of extracellular proteins is involved in stopping
#=GF CC   the formation of ice crystals at low temperatures. The proteins
#=GF CC   are composed of a 12 residue repeat that forms a structural
#=GF CC   repeat. The structure of the repeats is a beta helix [1]. Each
#=GF CC   repeat contains two cys residues that form a disulphide bridge.
#=GF SQ   8
#=GS U5FZP4_POPTR/61-70   AC U5FZP4.1
#=GS U5FZP4_POPTR/84-94   AC U5FZP4.1
#=GS U5FZP4_POPTR/1-10    AC U5FZP4.1
#=GS U5FZP4_POPTR/49-58   AC U5FZP4.1
#=GS U5FZP4_POPTR/36-46   AC U5FZP4.1
#=GS U5FZP4_POPTR/12-22   AC U5FZP4.1
#=GS U5FZP4_POPTR/25-34   AC U5FZP4.1
#=GS U5FZP4_POPTR/96-104  AC U5FZP4.1
U5FZP4_POPTR/61-70              --IGSENCIAA-q
U5FZP4_POPTR/84-94              -CIGSENCVAA-d
U5FZP4_POPTR/1-10               --IGSENCIAA-d
U5FZP4_POPTR/49-58              --IGSENCIAA-q
U5FZP4_POPTR/36-46              -CIGSENCVAAK.
U5FZP4_POPTR/12-22              -CIGSENCVAA-q
U5FZP4_POPTR/25-34              --IGSENCIAA-d
U5FZP4_POPTR/96-104             -CIGSENCI---h
#=GC seq_cons                   ..IGSENCIAA.p
//
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