GenomeNet

Database: Pfam
Entry: Anti-TRAP
LinkDB: Anti-TRAP
Original site: Anti-TRAP 
#=GF ID   Anti-TRAP
#=GF AC   PF15777.6
#=GF DE   Tryptophan RNA-binding attenuator protein inhibitory protein
#=GF AU   Eberhardt R;0000-0001-6152-1369
#=GF SE   Jackhmmer:O31466
#=GF GA   32.00 32.00;
#=GF TC   32.00 32.90;
#=GF NC   31.90 29.80;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF WK   Tryptophan_operon_leader
#=GF RN   [1]
#=GF RM   11557884
#=GF RT   Inhibition of the B. subtilis regulatory protein TRAP by the
#=GF RT   TRAP-inhibitory protein, AT.
#=GF RA   Valbuzzi A, Yanofsky C;
#=GF RL   Science. 2001;293:2057-2059.
#=GF RN   [2]
#=GF RM   11786553
#=GF RT   The anti-trp RNA-binding attenuation protein (Anti-TRAP), AT,
#=GF RT   recognizes the tryptophan-activated RNA binding domain of the
#=GF RT   TRAP regulatory protein.
#=GF RA   Valbuzzi A, Gollnick P, Babitzke P, Yanofsky C;
#=GF RL   J Biol Chem. 2002;277:10608-10613.
#=GF RN   [3]
#=GF RM   11566976
#=GF RT   Posttranscription initiation control of tryptophan metabolism in
#=GF RT   Bacillus subtilis by the trp RNA-binding attenuation protein
#=GF RT   (TRAP), anti-TRAP, and RNA structure.
#=GF RA   Babitzke P, Gollnick P;
#=GF RL   J Bacteriol. 2001;183:5795-5802.
#=GF RN   [4]
#=GF RM   20138150
#=GF RT   Bacillus licheniformis Anti-TRAP can assemble into two types of
#=GF RT   dodecameric particles with the same symmetry but inverted
#=GF RT   orientation of trimers.
#=GF RA   Shevtsov MB, Chen Y, Isupov MN, Leech A, Gollnick P, Antson AA;
#=GF RL   J Struct Biol. 2010;170:127-133.
#=GF DR   INTERPRO; IPR031538;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF SQ   19
#=GS A0A259U582_9FIRM/1-51   AC A0A259U582.1
#=GS Q65NU7_BACLD/1-52       AC Q65NU7.1
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 G; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 i; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 3; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 8; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 c; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 k; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 F; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 7; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 a; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 Y; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 h; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 M; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 C; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LCZ D; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 f; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 B; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 U; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 g; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 S; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 9; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 l; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 2; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 b; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 E; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 Q; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 J; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LCZ C; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 X; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 H; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 5; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LCZ B; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 L; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 1; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 O; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 6; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 R; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 m; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 V; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 I; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 4; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 N; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 e; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 Z; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LCZ A; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 A; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 D; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 T; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 P; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 K; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 W; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 d; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 j; 201-252;
#=GS A0A1I7FEY9_9BACL/1-70   AC A0A1I7FEY9.1
#=GS A0A328AIP6_9CAUL/11-65  AC A0A328AIP6.1
#=GS A0A2N5MCQ3_9BACI/2-35   AC A0A2N5MCQ3.1
#=GS D4Z607_SPHJU/1-64       AC D4Z607.1
#=GS RTPA_BACSU/1-52         AC O31466.1
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 I; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP9 M; 1-51;
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 F; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 A; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP9 J; 1-51;
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 G; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 E; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 J; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP9 C; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 K; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP9 D; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP8 J; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP9 E; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP9 I; 5-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 H; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP9 O; 1-51;
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 L; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP8 I; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP8 F; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 B; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2KO8 A; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP8 E; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 D; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2KO8 B; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP9 N; 36-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 C; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2KO8 C; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP8 H; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP8 G; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP9 H; 1-51;
#=GS A0A348AHL2_9FIRM/2-51   AC A0A348AHL2.1
#=GS A0A0D1V099_ANEMI/1-62   AC A0A0D1V099.1
#=GS A0A270BB68_9SPHN/24-74  AC A0A270BB68.1
#=GS A0A246JXI7_9SPHN/29-79  AC A0A246JXI7.1
#=GS A0A0U1L0I3_9FIRM/1-51   AC A0A0U1L0I3.1
#=GS A0A0M4G9N5_9BACI/1-52   AC A0A0M4G9N5.1
#=GS A0A259USK8_9FIRM/1-50   AC A0A259USK8.1
#=GS A0A081NVR9_9BACL/1-50   AC A0A081NVR9.1
#=GS A0LL54_SYNFM/1-59       AC A0LL54.1
#=GS A0A402BW72_9FIRM/1-51   AC A0A402BW72.1
#=GS A0A1W2EBJ9_9FIRM/2-50   AC A0A1W2EBJ9.1
#=GS A0A1G9MXL8_9FIRM/1-50   AC A0A1G9MXL8.1
A0A259U582_9FIRM/1-51              mgtnlt--------LEETCTACKGLGKIGTK.............----.--PCQNCQGTGTVLNEAGKKILNYLR----nsir
Q65NU7_BACLD/1-52                  ......MV-IATDDLETTCPNCNGSGREEPE.............----.--PCPKCSGKGVILTAQGSTLLHFIKKHLN....
#=GR Q65NU7_BACLD/1-52       SS    ......---S-HHHHEEE-TTTTTSSEETTE.............----.--E-TTTTTSSEEE-HHHHHHHHHHHHHHT....
A0A1I7FEY9_9BACL/1-70              ......MT-IALDDLEQRCWECNGSGRVPAVdgertagerndgeRIDG.ERVCPKCGGKGVVLTALGQTLLDFIRRHL-....
A0A328AIP6_9CAUL/11-65             ....pt---LALMDLERRCEACSGHGFVRVA.............--GR.PLDCEVCEGRGAIATEAGRRVLDFLRR---ya..
A0A2N5MCQ3_9BACI/2-35              ...leg-------------------------.............--NT.NVPCKNCDGKGTIPTAEGQQLLDFINK---ys..
D4Z607_SPHJU/1-64                  ...msg-TDSGLPELEEPCDACNGTGDAPPAt..........pyEPRA.SLNCPKCKGHKLAPTEAGQKLIEFIKRRFN....
RTPA_BACSU/1-52                    ......MV-IATDDLEVACPKCERAGEIEGT.............----.--PCPACSGKGVILTAQGYTLLDFIQKHLN....
#=GR RTPA_BACSU/1-52         SS    ......---S-GGGTEEE-TTTTTTSEETTE.............----.--E-TTTTTSSEEE-HHHHHHHHHHHHHTT....
A0A348AHL2_9FIRM/2-51              ..dkri-------NLEKECMRCQGAGKIDGK.............----.--TCAACEGKGTVLTEEGKKILEYLRN---sir.
A0A0D1V099_ANEMI/1-62              ......MSIIAMDDLEHACWECNGKGEIPSDse.........vhEGNE.MMSCPKCDGKGYIPTALGQTILGFVKRHL-....
A0A270BB68_9SPHN/24-74             ...prp----RTGDLDVICPVCAGYGQWNSQid........fvsQRSI.RVPCPKCDGRGWIETG--------------ad..
A0A246JXI7_9SPHN/29-79             .nalgg-------DLDVRCPVCSGHGQWNSQid.........liSHRSiRVPCPKCDGRGWIETG--------------adm.
A0A0U1L0I3_9FIRM/1-51              .mktna-------TLEETCSSCKGSGKIGTE.............----.--PCQTCQGTGTVLNEEGKEILNFLRN---sir.
A0A0M4G9N5_9BACI/1-52              ......MV-LATDDLEITCPSCKGTGEGDAA.............----.--PCEKCSGKGVILTGQGNTLLHFIKKHLN....
A0A259USK8_9FIRM/1-50              .mktna-------TLEETCSSCKGSGKIGTE.............----.--PCQTCQGTGTVLNEEGKEILNFLR----dsi.
A0A081NVR9_9BACL/1-50              .....m---ISMDDLEITCPECNGKGESEGT.............----.--PCKKCDSKGVILTSLGQTLLYFIKKH--t...
A0LL54_SYNFM/1-59                  ......MVRMRLPELETKCWMCWGSGKIASE.............DHGG.GMECPECGGVGWLPTADGRRLLDFVQRHLG....
A0A402BW72_9FIRM/1-51              .matdl-------KVEKECPKCHGHGKIANK.............----.--DCDTCNGTGTILTEDGLKILNYLR----nsir
A0A1W2EBJ9_9FIRM/2-50              ..kkdl-------NMEKECAKCHGRGKINNT.............----.--ICAACNGTGTVLTEDGLKILKFLR----dgi.
A0A1G9MXL8_9FIRM/1-50              ...mks-----TSSIEEECLSCHGTGKINQK.............----.--KCPACNGTGTSLTEDGQKLLKFLR----dsi.
#=GC SS_cons                       ......---S-HHHCEEE-TTTTTTSEETTE.............----.--E-TTTTTSSEEE-HHHHHHHHHHHHHCT....
#=GC seq_cons                      .............cLEppCspCpGpGclssp....................sCspCsG+GslLTttGpplLpFl+p.......
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