GenomeNet

Database: Pfam
Entry: ApoB100_C
LinkDB: ApoB100_C
Original site: ApoB100_C 
#=GF ID   ApoB100_C
#=GF AC   PF12491.8
#=GF DE   Apolipoprotein B100 C terminal
#=GF AU   Gavin OL;
#=GF SE   Prosite
#=GF GA   21.20 21.20;
#=GF TC   21.30 21.90;
#=GF NC   21.10 20.30;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 45638612 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   17934898
#=GF RT   Cloning and tissue expression characterization of the chicken
#=GF RT   APOB gene.
#=GF RA   Zhang S, Shi H, Li H;
#=GF RL   Anim Biotechnol. 2007;18:243-250.
#=GF DR   INTERPRO; IPR022176;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This domain family is found in eukaryotes, and is approximately
#=GF CC   60 amino acids in length. There are two conserved sequence
#=GF CC   motifs: QLS and LIDL. ApoB100 has an essential role in the
#=GF CC   assembly and secretion of triglyceride-rich lipoproteins and
#=GF CC   lipids transport.
#=GF SQ   77
#=GS A0A1L8GBN8_XENLA/4484-4539  AC A0A1L8GBN8.1
#=GS A0A087R4G1_APTFO/4456-4512  AC A0A087R4G1.1
#=GS A0A2K5H7G2_COLAP/4486-4542  AC A0A2K5H7G2.1
#=GS A0A1U7QU07_MESAU/4440-4496  AC A0A1U7QU07.1
#=GS V8NQB4_OPHHA/4167-4223      AC V8NQB4.1
#=GS A0A1S3EX59_DIPOR/4495-4551  AC A0A1S3EX59.1
#=GS M7ANL9_CHEMY/4404-4460      AC M7ANL9.1
#=GS S9X982_CAMFR/3353-3409      AC S9X982.1
#=GS A0A1D5QKX6_MACMU/4486-4542  AC A0A1D5QKX6.1
#=GS H3B136_LATCH/4488-4541      AC H3B136.1
#=GS U3IWA4_ANAPL/4487-4543      AC U3IWA4.1
#=GS M3X9R6_FELCA/4250-4306      AC M3X9R6.2
#=GS G1M3A3_AILME/4051-4107      AC G1M3A3.1
#=GS A0A1U7U7G5_TARSY/4802-4857  AC A0A1U7U7G5.1
#=GS W5Q7J0_SHEEP/4478-4534      AC W5Q7J0.1
#=GS F6UCI5_ORNAN/565-621        AC F6UCI5.1
#=GS A0A091F567_CORBR/4413-4469  AC A0A091F567.1
#=GS A0A0M3HSR3_ASCLU/61-98      AC A0A0M3HSR3.1
#=GS A0A2I3GEZ8_NOMLE/4447-4503  AC A0A2I3GEZ8.1
#=GS A0A2I3MSD3_PAPAN/4483-4539  AC A0A2I3MSD3.1
#=GS F6Z8Q2_XENTR/4408-4456      AC F6Z8Q2.1
#=GS H2R8Y5_PANTR/4493-4549      AC H2R8Y5.1
#=GS G1U9R4_RABIT/4475-4531      AC G1U9R4.1
#=GS H0V4A3_CAVPO/4408-4463      AC H0V4A3.2
#=GS F1P8Z5_CANLF/4354-4410      AC F1P8Z5.1
#=GS A0A091DZW7_FUKDA/4583-4640  AC A0A091DZW7.1
#=GS H0XCJ2_OTOGA/4477-4533      AC H0XCJ2.1
#=GS A0A091LID5_CATAU/4442-4498  AC A0A091LID5.1
#=GS APOB_CHICK/291-347          AC P11682.1
#=GS A0A218VCI9_9PASE/4447-4503  AC A0A218VCI9.1
#=GS M3XJT1_LATCH/4502-4555      AC M3XJT1.1
#=GS A0A1A6FX10_NEOLE/254-308    AC A0A1A6FX10.1
#=GS F6YCW8_HORSE/4448-4504      AC F6YCW8.1
#=GS H2P6V1_PONAB/4490-4546      AC H2P6V1.1
#=GS A0A099ZAE5_TINGU/4457-4513  AC A0A099ZAE5.1
#=GS A0A287A4X9_PIG/3809-3865    AC A0A287A4X9.1
#=GS A0A2K5L6M5_CERAT/4426-4482  AC A0A2K5L6M5.1
#=GS E9Q1Y3_MOUSE/4401-4456      AC E9Q1Y3.1
#=GS A0A091K5Q8_EGRGA/4414-4470  AC A0A091K5Q8.1
#=GS G1KKJ8_ANOCA/4427-4481      AC G1KKJ8.1
#=GS A0A151PIT1_ALLMI/4338-4394  AC A0A151PIT1.1
#=GS A0A1U7SB35_ALLSI/3454-3510  AC A0A1U7SB35.1
#=GS A0A226N8M8_CALSU/3815-3871  AC A0A226N8M8.1
#=GS H0ZSG7_TAEGU/4455-4511      AC H0ZSG7.1
#=GS A0A1L8G5F9_XENLA/4369-4424  AC A0A1L8G5F9.1
#=GS G1QIQ2_NOMLE/4490-4546      AC G1QIQ2.1
#=GS A0A287AG13_PIG/4502-4558    AC A0A287AG13.1
#=GS A0A2I3T6M8_PANTR/4467-4523  AC A0A2I3T6M8.1
#=GS F7HVJ1_CALJA/4488-4544      AC F7HVJ1.1
#=GS A0A091QPJ1_MERNU/4457-4513  AC A0A091QPJ1.1
#=GS APOB_MOUSE/4434-4490        AC E9Q414.1
#=GS R4GAW2_ANOCA/4427-4481      AC R4GAW2.1
#=GS K7FHQ5_PELSI/4484-4540      AC K7FHQ5.1
#=GS G3GZQ0_CRIGR/3466-3522      AC G3GZQ0.1
#=GS A0A226PW96_COLVI/4456-4512  AC A0A226PW96.1
#=GS A0A0D9R703_CHLSB/4486-4542  AC A0A0D9R703.1
#=GS A0A1V4JN46_PATFA/4486-4542  AC A0A1V4JN46.1
#=GS A0A091MUI9_APAVI/4461-4517  AC A0A091MUI9.1
#=GS F1NV02_CHICK/4489-4545      AC F1NV02.2
#=GS F6YE73_HORSE/4471-4527      AC F6YE73.1
#=GS F1M6Z1_RAT/4435-4491        AC F1M6Z1.1
#=GS S7N7N9_MYOBR/4481-4537      AC S7N7N9.1
#=GS G1PA91_MYOLU/4486-4542      AC G1PA91.1
#=GS I3N8H0_ICTTR/4411-4467      AC I3N8H0.2
#=GS APOB_HUMAN/4494-4550        AC P04114.2
#=GS G3RWY1_GORGO/4497-4553      AC G3RWY1.2
#=GS G3QR49_GORGO/4493-4549      AC G3QR49.1
#=GS A0A2I0MU22_COLLI/2562-2597  AC A0A2I0MU22.1
#=GS G1NMN7_MELGA/3525-3581      AC G1NMN7.2
#=GS G5AZB7_HETGA/4643-4698      AC G5AZB7.1
#=GS F7HVI6_CALJA/4463-4519      AC F7HVI6.1
#=GS G7PLQ1_MACFA/4465-4521      AC G7PLQ1.1
#=GS M3YQN7_MUSPF/4409-4465      AC M3YQN7.1
#=GS APOB_RAT/4402-4458          AC Q7TMA5.1
#=GS A0A0A0AI07_CHAVO/4442-4498  AC A0A0A0AI07.1
#=GS E1BNR0_BOVIN/4496-4552      AC E1BNR0.2
#=GS G3UA31_LOXAF/1374-1430      AC G3UA31.1
A0A1L8GBN8_XENLA/4484-4539             ...l--NVKLQDAYSLVVNSYEKLIAEASRLIDTVIQNYNSFIEYIAQLLQSIQDSATEE-m...
A0A087R4G1_APTFO/4456-4512             ....QVKEKLQEIYGRLSHSQEKLISEAKRLIDLTIENYSAFLQYISELLRWFEQVTAESI....
A0A2K5H7G2_COLAP/4486-4542             ....QFKHKLQDFSDQLSDYYEKFIAESKRLIDLSIQNYHTFLIYIMELLKKLQSTTLM--np..
A0A1U7QU07_MESAU/4440-4496             ....QFSSKVQDLSDQLSDYCEKFIAESARLIGLSIQSYHMLLRYITELLKELQVATANN-v...
V8NQB4_OPHHA/4167-4223                 ....QVKAKLQESYNHLLDSYETLISETKRLVDLTIEKYTTFFQYLQKLLDWLEKVTADT-l...
A0A1S3EX59_DIPOR/4495-4551             ....QLRSKLQEFSDQLSDYHEKFIAESKRLIDLSIQSYSIVLSYLIELLEKLQSATVS--gi..
M7ANL9_CHEMY/4404-4460                 ...l-VKVKIQDAYDQLSEAYERLISATQKLIDLTIEKYSTFLQYITELLHHLEKMTTDSI....
S9X982_CAMFR/3353-3409                 ....QFTYKLQNFSDYLSDYYEKFIAESKRLIDLSIQKYHVFLRCIMDLLKKLQSATEDNI....
A0A1D5QKX6_MACMU/4486-4542             ....QFRYKLQDFSDQLSDYYEKFIAESKRLIDLSIQNYHTFLIYIMELLKKLQSTTVMN-s...
H3B136_LATCH/4488-4541                 ....QAKLKLHETYHQLSSLYEKIIIEAKNLIDQSVEKYNEFILFIMQLLEELQT------sns.
U3IWA4_ANAPL/4487-4543                 ....QVKAKLQEIYEQLSDSQEKLIGEAKKLIDLTIEKYSALLQYISELLRWLEQVTADSI....
M3X9R6_FELCA/4250-4306                 ....QFRYKLQDFSDQLSDYYEKFITESKRLIDLSTQTYHMFLRYITELLKELQSATVNNM....
G1M3A3_AILME/4051-4107                 ....QFTYKLQDFSDQLSDYYEKFITESKRLIDLSTQKYHMFLRYIIELLKELQSATVNNM....
A0A1U7U7G5_TARSY/4802-4857             ....QFRYKLQDFSDQLSDYYEKFIVESTRLIDLSIQNYHMFLRYITELLKKLQST-----ksms
W5Q7J0_SHEEP/4478-4534                 ....QFTYKLQEFSDQLSDYCEKFISESKRLIDLSIQNYHMFLNYIMELLKELQSATVNDM....
F6UCI5_ORNAN/565-621                   ....QFKVKLQDASDQISRSYETLAAETKRLADLTVENFYAFLKFLTELLQKLRTETAGSI....
A0A091F567_CORBR/4413-4469             ....QLKEKLREIYGQLSQSQAKLISEAKRLIDLTIENYSAFLQYISELLRWLEQITAESI....
A0A0M3HSR3_ASCLU/61-98                 etvr----RLQECLDRADGTYEKLIESSQSLIDFVKKEYH---------------------ea..
A0A2I3GEZ8_NOMLE/4447-4503             ....QFRYKLQDFSDQLSDYYEKFIAESKRLIDLSIQNYHTFLIYIMELLKKLQSTTVMN-p...
A0A2I3MSD3_PAPAN/4483-4539             ....QFRYKLQDFSDQLSDYYEKFIAESKRLIDLSIQNYHTFLIYIMELLKKLQSTTVMN-p...
F6Z8Q2_XENTR/4408-4456                 ...l--NEKLQATSNLFVNSYEKLIAEASRLIDIIIQNYNSFIEYVNQLLQSIQ-------....
H2R8Y5_PANTR/4493-4549                 ....QFRYKLQDFSDQLSDYYEKFIAESKRLIDLSIQNYHTFLIYITELLKKLQSTTVMN-p...
G1U9R4_RABIT/4475-4531                 ....QFRYKLQDLSDQLCDYPEKLVAESKRLIDLSIQSYHMFLRYVTELLKELQLAAVNDM....
H0V4A3_CAVPO/4408-4463                 ....QFTSKLQELSDQFSDYHEKVIALFQGLIDLSIENYHMLLRYITEVLAKLQAATAK--g...
F1P8Z5_CANLF/4354-4410                 ....QFRYKLQDFLDQLSDYYEKFITESKRLIDLSIQNYHMFLRYITELLKELQSATVNNM....
A0A091DZW7_FUKDA/4583-4640             .qek-FTSKLQEFPDQFSDYHEKFIAESQRVMDLFIQNYHMILSYITELLQKLQAATAS--g...
H0XCJ2_OTOGA/4477-4533                 ....QFRYKLQDFSDQLCDYYEKFIAESKRLIDLSIQNYHMFLRYIMELLKKLQSTTAMS-p...
A0A091LID5_CATAU/4442-4498             ....QVKEKLQEIYGQLSHSQEKLISEAKRLIDLTIENYSAFLQYISELLRWFEQITAESI....
APOB_CHICK/291-347                     ....QVKAKLQEIYGQLSDSQEKLINVAKMLIDLTVEKYSTFMKYIFELLRWFEQATADSI....
A0A218VCI9_9PASE/4447-4503             ....QLKEKLREIYGQLSQSQEKLISEAKRLIDLTIENYSAFLQYLSELLRWLEQITAESI....
M3XJT1_LATCH/4502-4555                 ....QAKLKLHETYHQLSSLYEKIIIEAKNLIDQSVEKYNEFILFIMQLLEELQT------sns.
A0A1A6FX10_NEOLE/254-308               ....QSSSKLQDFSDQFSDYYEKFIDESTRLIDLSIQSYHIFLKYITEFLKELQVATAN--....
F6YCW8_HORSE/4448-4504                 ....QFIYKLQDFPDQLSDYYEKFIAESQRLIDLSIQIYHVFVKYIAELLKELQLATVNDM....
H2P6V1_PONAB/4490-4546                 ....QFRYKLQDFSDQLSDYYEKFIAESKRLIDLSIQNYHTFLIYITELLKKLQSTAVMN-p...
A0A099ZAE5_TINGU/4457-4513             ....QVKAKLEEMYWQLSNSQEKLISEAKKLIDLTIENYSALAQYIAELIRWLEQMTANSI....
A0A287A4X9_PIG/3809-3865               ....QFIYKLQDFSDQLSDYYEKFIAETERLIDLSIQKYHMFLRYIMKLLKELQSDTVNDM....
A0A2K5L6M5_CERAT/4426-4482             ....QFRYKLQDFSDQLSDYYEKFIAESKRLIDLSIQNYHTFLIYIMELLKKLQSTTVMN-p...
E9Q1Y3_MOUSE/4401-4456                 ....QFHSNLQDFSDQLSSYYEKFVGESTRLIDLSIQNYHVFLRYITELLRKLQVATANN-....
A0A091K5Q8_EGRGA/4414-4470             ....QVKEKLQEIYGQLSHSQEKLISEAKRLIDLTAENYSAFLQYMSELLRWFEQITAESI....
G1KKJ8_ANOCA/4427-4481                 ....QVKEKLQEAYEHLS--YERFITNTKKLIDLVIENYAAFFQDLQQLLHQFEEAAADT-l...
A0A151PIT1_ALLMI/4338-4394             ....QVKAKLLGAYDQLLLSCEWLITETRKLIDVAIESYSTVIRYITELLYKLEKSTAESI....
A0A1U7SB35_ALLSI/3454-3510             ....QVKAKLLGAYDQLLLSCEWLITETRKLIDVAIESYSTVIRYITELLYKLEKSTAESI....
A0A226N8M8_CALSU/3815-3871             ....QVKAKLQEIYEQLSESQEKLINMSKMLIDLTLEKYSTFMKYIFELLRWFEQATADSI....
H0ZSG7_TAEGU/4455-4511                 ....QLKEKLREIYGQISQSQEKLISEAKRLIDLTIENYSAFLQYLSELLRWLEQVTAESI....
A0A1L8G5F9_XENLA/4369-4424             ...l--NEKIQDAYSLVVNSYEKLIAEASRLIDTIIQNYNSFIEYITQLLQSMQDSATEE-i...
G1QIQ2_NOMLE/4490-4546                 ....QFRYKLQDFSDQLSDYYEKFIAESKRLIDLSIQNYHTFLIYIMELLKKLQSTTVMN-p...
A0A287AG13_PIG/4502-4558               ....QFIYKLQDFSDQLSDYYEKFIAETERLIDLSIQKYHMFLRYIMKLLKELQSDTVNDM....
A0A2I3T6M8_PANTR/4467-4523             ....QFRYKLQDFSDQLSDYYEKFIAESKRLIDLSIQNYHTFLIYITELLKKLQSTTVMN-p...
F7HVJ1_CALJA/4488-4544                 ....QFRYKLQDFSDQLSDYSEKFIAESKRWIDLSIENYHTFLRYITELLKKLQSTTVMN-p...
A0A091QPJ1_MERNU/4457-4513             ....QVKEKLQEIYGQLSHSQEKVISEAKRLIDLTIENYSAFLQYISELLRWLEQVTAES-v...
APOB_MOUSE/4434-4490                   ....QFHSNLQDFSDQLSSYYEKFVGESTRLIDLSIQNYHVFLRYITELLRKLQVATANN-v...
R4GAW2_ANOCA/4427-4481                 ....QVKEKLQEAYEHLS--YERFITNTKKLIDLVIENYAAFFQDLQQLLHQFEEAAADT-l...
K7FHQ5_PELSI/4484-4540                 ...l-VKVKIQGAHNQLSQAYERLISATQKLIDLTIENYSTFLQYITELLHQLEKMTTDTI....
G3GZQ0_CRIGR/3466-3522                 ....QFSFKLQDFSVQLSEYFEKFLAESTRLIDLSIQSYHVFLRYITELLKELQVATTNN-v...
A0A226PW96_COLVI/4456-4512             ....QVKAKLQEIYEQLSESQEKLINMSKMLIDLTLEKYSTFMKYILELLRWFEQATADSI....
A0A0D9R703_CHLSB/4486-4542             ....QFRYKLQDFSDQLSDYYEKFIAESKRLIDLSIQNYHTFLIYIMELLKKLQSTTVMN-p...
A0A1V4JN46_PATFA/4486-4542             ....QLKEKLQEIYGQLSHSQEKLISEVKRLIDLTIESYSAFLQYISELLHWLEQITGES-i...
A0A091MUI9_APAVI/4461-4517             ....QVREKLQEIYGQLSLSQEKVINEAKRLINLAIENCSACLQYILESLRWFEQKTAESI....
F1NV02_CHICK/4489-4545                 ....QVKAKLQEIYGQLSDSQEKLINVAKMLIDLTVEKYSTFMKYIFELLRWFEQATADSI....
F6YE73_HORSE/4471-4527                 ....QFIYKLQDFPDQLSDYYEKFIAESQRLIDLSIQIYHVFVKYIAELLKELQLATVNDM....
F1M6Z1_RAT/4435-4491                   ....QLHSKLQDFSDQLSGYYEKFVAESTRLIDLSIQNYHMFLRYIAELLKKLQVATANN-v...
S7N7N9_MYOBR/4481-4537                 ....QFKYIPQNFSDRLFDYYEKFIAESQRLIDLSIQTYHMFLIYITGLLKELQSTTVYD-l...
G1PA91_MYOLU/4486-4542                 ....QFKDILQNFSDRLFDYYEKFIAESQILIDLSIQTYHMFLIYITGLLKELQSTTVYD-l...
I3N8H0_ICTTR/4411-4467                 ....QFRSKLQDFSDQLSDYYEKFIAEATRLIDLSIQSYHIFLRYITKFLTELQSTTVND-v...
APOB_HUMAN/4494-4550                   ....QFRYKLQDFSDQLSDYYEKFIAESKRLIDLSIQNYHTFLIYITELLKKLQSTTVMN-p...
G3RWY1_GORGO/4497-4553                 ....QFRYKLQDFSDQLSDYYEKFIAESKRLIDLSIQNYHTFLIYIKELLKKLQSTTVMN-p...
G3QR49_GORGO/4493-4549                 ....QFRYKLQDFSDQLSDYYEKFIAESKRLIDLSIQNYHTFLIYIKELLKKLQSTTVMN-p...
A0A2I0MU22_COLLI/2562-2597             ....QLKEKLQEVYGQLSHSQEKLISEAKRLIDLTIE------------------------xxx.
G1NMN7_MELGA/3525-3581                 ....QVKTKLQEINGQLSDSQEKLINVAKMLIDLTVEKYSTFMKYIFELLRWFEQATADSI....
G5AZB7_HETGA/4643-4698                 ....QFISKLQEFLDQFPDYYEKFIAESQRLIDLAIQSYHVILSYITELLKKLQAATAS--g...
F7HVI6_CALJA/4463-4519                 ....QFRYKLQDFSDQLSDYSEKFIAESKRWIDLSIENYHTFLRYITELLKKLQSTTVMN-p...
G7PLQ1_MACFA/4465-4521                 ....QFRYKLQDFSDQLSDYYEKFIAESKRLIDLSIQNYHTFLIYIMELLKKLQSTTVMN-s...
M3YQN7_MUSPF/4409-4465                 ....QFRYKLQDFSEQLSEYNEKFITESKRLIDLFIQKYHMFLTYITELLKEIQLTTVNNM....
APOB_RAT/4402-4458                     ....QLHSKLQDFSDQLSGYYEKFVAESTRLIDLSIQNYHMFLRYIAELLKKLQVATANN-g...
A0A0A0AI07_CHAVO/4442-4498             ....QLKEKLQEIYGQLSHSQEKLISEARRLIDLTIENYSAFLQYISELLRWFEQMTAESI....
E1BNR0_BOVIN/4496-4552                 ....QFTYKLQEFSDQLSDYCEKFISESKRLIDLSIQNYHMFLNYIMELLKELQSATINDM....
G3UA31_LOXAF/1374-1430                 ....QFRYKLQDFSDQFWDYYEKFIAESGRLIDLSIQKYHMFLRYITELLKKLQSATASDI....
#=GC seq_cons                          ....Qh+hKLQ-h.DQLS-haEKhIuEoKRLIDLoIpsYpsFLpYItELL+cLQpsTsps.....
//
DBGET integrated database retrieval system