GenomeNet

Database: Pfam
Entry: BaffR-Tall_bind
LinkDB: BaffR-Tall_bind
Original site: BaffR-Tall_bind 
#=GF ID   BaffR-Tall_bind
#=GF AC   PF09256.11
#=GF DE   BAFF-R, TALL-1 binding
#=GF AU   Sammut SJ;0000-0003-4472-904X
#=GF SE   pdb_1oqe
#=GF GA   21.00 21.00;
#=GF TC   21.00 21.30;
#=GF NC   20.90 20.30;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   12721620
#=GF RT   Ligand-receptor binding revealed by the TNF family member
#=GF RT   TALL-1. 
#=GF RA   Liu Y, Hong X, Kappler J, Jiang L, Zhang R, Xu L, Pan CH, Martin
#=GF RA   WE, Murphy RC, Shu HB, Dai S, Zhang G; 
#=GF RL   Nature. 2003;423:49-56.
#=GF DR   INTERPRO; IPR015336;
#=GF DR   SCOP; 1oqe; fa;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   Members of this family, which are predominantly found in the
#=GF CC   tumour necrosis factor receptor superfamily member 13c, BAFF-R,
#=GF CC   are required for binding to tumour necrosis factor ligand TALL-1
#=GF CC   [1].
#=GF SQ   81
#=GS A0A2Y9T0B2_PHYMC/22-50    AC A0A2Y9T0B2.1
#=GS H0W812_CAVPO/16-45        AC H0W812.2
#=GS A0A093H8L8_STRCA/13-42    AC A0A093H8L8.1
#=GS K7G7Y0_PELSI/14-35        AC K7G7Y0.1
#=GS G1T4W9_RABIT/19-47        AC G1T4W9.1
#=GS A0A2K5V1K1_MACFA/16-45    AC A0A2K5V1K1.1
#=GS F1MJD0_BOVIN/16-44        AC F1MJD0.3
#=GS H0XRB7_OTOGA/19-48        AC H0XRB7.1
#=GS A0A384D374_URSMA/19-48    AC A0A384D374.1
#=GS A0A452QPN6_URSAM/19-48    AC A0A452QPN6.1
#=GS L5K9E1_PTEAL/16-45        AC L5K9E1.1
#=GS A0A3Q7UGN9_URSAR/19-48    AC A0A3Q7UGN9.1
#=GS A0A2U3Y9P0_LEPWE/19-48    AC A0A2U3Y9P0.1
#=GS A0A340WYL1_LIPVE/16-46    AC A0A340WYL1.1
#=GS W5QBP3_SHEEP/22-47        AC W5QBP3.1
#=GS M3YY53_MUSPF/19-48        AC M3YY53.1
#=GS A0A151NHU1_ALLMI/14-42    AC A0A151NHU1.1
#=GS A0A2Y9QBA0_DELLE/22-50    AC A0A2Y9QBA0.1
#=GS D4A281_RAT/19-48          AC D4A281.2
#=GS A0A3Q7U5J6_VULVU/24-53    AC A0A3Q7U5J6.1
#=GS A0A286Y666_CAVPO/16-45    AC A0A286Y666.1
#=GS A0A452EY37_CAPHI/16-45    AC A0A452EY37.1
#=GS A0A2K6R993_RHIRO/16-45    AC A0A2K6R993.1
#=GS A0A1V4JB67_PATFA/20-50    AC A0A1V4JB67.1
#=GS F1NLV1_CHICK/17-46        AC F1NLV1.1
#=GS A0A091IRU1_EGRGA/16-43    AC A0A091IRU1.1
#=GS A0A091XCI0_OPIHO/15-44    AC A0A091XCI0.1
#=GS A0A087QLV5_APTFO/17-45    AC A0A087QLV5.1
#=GS A0A2Y9Q5E6_DELLE/22-50    AC A0A2Y9Q5E6.1
#=GS A0A2K5CHR2_AOTNA/16-44    AC A0A2K5CHR2.1
#=GS G5BPQ7_HETGA/22-51        AC G5BPQ7.1
#=GS F6YQZ6_ORNAN/19-48        AC F6YQZ6.1
#=GS G3IBR9_CRIGR/2-31         AC G3IBR9.1
#=GS H2QLT1_PANTR/16-45        AC H2QLT1.2
#=GS A0A452CM34_BALAS/16-45    AC A0A452CM34.1
#=GS A0A3Q7U4X3_URSAR/19-48    AC A0A3Q7U4X3.1
#=GS Q3U106_MOUSE/19-48        AC Q3U106.1
#=GS A0A0Q3PDH1_AMAAE/22-51    AC A0A0Q3PDH1.1
#=GS M3WQA3_FELCA/16-45        AC M3WQA3.3
#=GS A0A2Y9KM89_ENHLU/19-48    AC A0A2Y9KM89.1
#=GS G1LRZ9_AILME/18-47        AC G1LRZ9.1
#=GS G1S0G7_NOMLE/16-45        AC G1S0G7.2
#=GS A0A226NWQ2_COLVI/17-48    AC A0A226NWQ2.1
#=GS A0A093IQ86_DRYPU/14-44    AC A0A093IQ86.1
#=GS F2YU84_HORSE/16-45        AC F2YU84.1
#=GS A0A2Y9KPP4_ENHLU/19-48    AC A0A2Y9KPP4.1
#=GS A0A226MP14_CALSU/17-46    AC A0A226MP14.1
#=GS A0A2R8VI78_MOUSE/16-29    AC A0A2R8VI78.1
#=GS A0A1S2ZRM0_ERIEU/14-43    AC A0A1S2ZRM0.1
#=GS A0A493TDS8_ANAPP/17-46    AC A0A493TDS8.1
#=GS G3WFH9_SARHA/34-61        AC G3WFH9.1
#=GS G3WFH9_SARHA/12-38        AC G3WFH9.1
#=GS H9KVT2_CALJA/16-45        AC H9KVT2.1
#=GS G3U9C5_LOXAF/16-45        AC G3U9C5.1
#=GS A0A2Y9R6Z2_TRIMA/188-217  AC A0A2Y9R6Z2.1
#=GS A0A2Y9L0T0_ENHLU/19-48    AC A0A2Y9L0T0.1
#=GS G3R8S3_GORGO/16-45        AC G3R8S3.2
#=GS A0A2Y9QB52_DELLE/22-50    AC A0A2Y9QB52.1
#=GS TR13C_HUMAN/16-45         AC Q96RJ3.1
#=GS TR13C_HUMAN/16-45         DR PDB; 3V56 L; 23-34;
#=GS TR13C_HUMAN/16-45         DR PDB; 2HFG R; 16-39;
#=GS TR13C_HUMAN/16-45         DR PDB; 1OSX A; 17-42;
#=GS TR13C_HUMAN/16-45         DR PDB; 1OQE N; 1-24;
#=GS TR13C_HUMAN/16-45         DR PDB; 1OQE O; 1-30;
#=GS TR13C_HUMAN/16-45         DR PDB; 1OQE L; 1-30;
#=GS TR13C_HUMAN/16-45         DR PDB; 1MPV A; 23-34;
#=GS TR13C_HUMAN/16-45         DR PDB; 1OQE K; 1-30;
#=GS TR13C_HUMAN/16-45         DR PDB; 1OQE R; 1-30;
#=GS TR13C_HUMAN/16-45         DR PDB; 1OQE P; 1-30;
#=GS TR13C_HUMAN/16-45         DR PDB; 1OQE M; 1-30;
#=GS TR13C_HUMAN/16-45         DR PDB; 1OQE Q; 1-30;
#=GS A0A096NKC9_PAPAN/16-45    AC A0A096NKC9.2
#=GS A0A1U7RXT6_ALLSI/14-42    AC A0A1U7RXT6.1
#=GS Q3SXS7_MOUSE/19-48        AC Q3SXS7.1
#=GS A0A091W0J0_NIPNI/16-45    AC A0A091W0J0.1
#=GS A0A2U3ZCW5_ODORO/19-48    AC A0A2U3ZCW5.1
#=GS A0A099ZNP1_TINGU/13-45    AC A0A099ZNP1.1
#=GS G1NHN5_MELGA/17-48        AC G1NHN5.1
#=GS H2P4K9_PONAB/1-29         AC H2P4K9.1
#=GS A0A0A0A421_CHAVO/15-42    AC A0A0A0A421.1
#=GS A0A091FVM1_9AVES/13-38    AC A0A091FVM1.1
#=GS A0A2K5SC14_CEBCA/16-45    AC A0A2K5SC14.1
#=GS A0A1A6GSF7_NEOLE/19-48    AC A0A1A6GSF7.1
#=GS A0A3Q2I3M6_HORSE/16-45    AC A0A3Q2I3M6.1
#=GS TR13C_MOUSE/19-48         AC Q9D8D0.1
#=GS F1PL17_CANLF/17-46        AC F1PL17.2
#=GS A0A2I0MJJ4_COLLI/20-50    AC A0A2I0MJJ4.1
#=GS A0A2K6GIX6_PROCO/16-45    AC A0A2K6GIX6.1
#=GS A0A1U7TUV1_TARSY/16-45    AC A0A1U7TUV1.1
#=GS A0A287AJ47_PIG/16-45      AC A0A287AJ47.1
#=GS A0A2Y9KN04_ENHLU/19-48    AC A0A2Y9KN04.1
#=GS A0A091HID2_CALAN/14-44    AC A0A091HID2.1
#=GS A0A3Q0CJZ6_MESAU/46-75    AC A0A3Q0CJZ6.1
A0A2Y9T0B2_PHYMC/22-50               ...p--QCLQTQCFDPLVRKCVACS.LLRT.TEPRP............
H0W812_CAVPO/16-45                   ....PTRCVQTECFDHLVRHCVSCR.LLRT.PDSQ-a...........
A0A093H8L8_STRCA/13-42               ...s-TSCLPSQCFDPLIRSCVECS.KL--.-----ykdntkp.....
K7G7Y0_PELSI/14-35                   ...a--TCSQSLCFDILTKACVSCS.----.-----el..........
G1T4W9_RABIT/19-47                   ....PTSCVQAQCFDPLTRHCVACY.LLHI.PP---aa..........
A0A2K5V1K1_MACFA/16-45               ....PTPCVPAECFDLLVRHCVACG.LLRT.PRPKP............
F1MJD0_BOVIN/16-44                   ....PTQCLQTQCFDPLVRNCVACS.LLRT.TGP--r...........
H0XRB7_OTOGA/19-48                   ....PTSCYPAQCFDPLLRLCVDCE.LFRT.PES--pa..........
A0A384D374_URSMA/19-48               ....PTQCVQAECFDPLVRNCVACK.LFRT.SEPRP............
A0A452QPN6_URSAM/19-48               ....PTQCVQAECFDPLVRNCVACK.LFRT.SEPRP............
L5K9E1_PTEAL/16-45                   ....PTQCVQAQCFDPLVRNCVACK.LFRT.PEPGP............
A0A3Q7UGN9_URSAR/19-48               ....PTQCVQAECFDPLVRNCVACK.LFRT.SEPRP............
A0A2U3Y9P0_LEPWE/19-48               ....PTQCVQAECFDPLVRNCVACK.LFRT.PEPRP............
A0A340WYL1_LIPVE/16-46               ..tp--QCLQTQCFDPLVRKCVACS.LLRTePRP--gk..........
W5QBP3_SHEEP/22-47                   ..rr------PRCSAPLVRICVACS.LLRT.TEP--rl..........
M3YY53_MUSPF/19-48                   ....PTQCVQAQCFDPLVRNCVACN.LFRT.PEPRP............
A0A151NHU1_ALLMI/14-42               ...s--DCPQDLCFDKLTKQCLSCH.LFGI.SNT--dt..........
A0A2Y9QBA0_DELLE/22-50               ...p--QCLQTQCFDPLVRKCVACS.LLRT.TEPRP............
D4A281_RAT/19-48                     ...s-TQCNQTECFDPLVRNCVSCE.LFYT.PETRH............
A0A3Q7U5J6_VULVU/24-53               ....PTRCVQAECFDPLVRNCVACK.LLRT.PEPRP............
A0A286Y666_CAVPO/16-45               ....PTRCVQTECFDHLVRHCVSCR.LLRT.PEPR-a...........
A0A452EY37_CAPHI/16-45               ....PTQCLQTQCFDPLVRNCVACS.LLRT.TEP--rl..........
A0A2K6R993_RHIRO/16-45               ....PTPCVPAECFDLLVRHCVACG.LLRT.PRPKP............
A0A1V4JB67_PATFA/20-50               ....-SSCLSSQCFDTLTKLCVECSdLLK-.-----dhttepa.....
F1NLV1_CHICK/17-46                   ...a--SCLSSQCFDPLTRSCVMCS.----.-----elfgdnttdp..
A0A091IRU1_EGRGA/16-43               ....-SSCLSSQCFDLLTRSCVKCS.----.-----dlfkdntt....
A0A091XCI0_OPIHO/15-44               ....-SSCLSSQCFDLLTRSCVKCSdLFK-.-----enttlp......
A0A087QLV5_APTFO/17-45               ...s---CLSSQCFDLLTRSCVKCSdLF--.-----kdnttlp.....
A0A2Y9Q5E6_DELLE/22-50               ...p--QCLQTQCFDPLVRKCVACS.LLRT.TEPRP............
A0A2K5CHR2_AOTNA/16-44               ....PTPCVPTECYDLLVRKCVDCR.LLRK.S----plk.........
G5BPQ7_HETGA/22-51                   ....PTRCIQAECFDHLVRHCVACS.LLRT.AEPR-a...........
F6YQZ6_ORNAN/19-48                   ....PSACGQPNCYDPLTRGCVSCF.LLQF.PGT--ve..........
G3IBR9_CRIGR/2-31                    ...t-TPCVQTLCFDPLVRHCVACN.LLRT.PDPLH............
H2QLT1_PANTR/16-45                   ....PTPCVPAECFDLLVRHCVACG.LLRT.PRPKP............
A0A452CM34_BALAS/16-45               ..tp--QCLQTQCFDPLVRKCVACS.LLRT.TEPRP............
A0A3Q7U4X3_URSAR/19-48               ....PTQCVQAECFDPLVRNCVACK.LFRT.SEPRP............
Q3U106_MOUSE/19-48                   ....PTQCNQTECFDPLVRNCVSCE.LFHT.PDTGH............
A0A0Q3PDH1_AMAAE/22-51               ....-SSCLSSQCFDLLTKSCVKCSdLFKE.-----nttep.......
M3WQA3_FELCA/16-45                   ....PTKCVVDKCFDPLVRKCVDCR.LLRT.PEPGP............
A0A2Y9KM89_ENHLU/19-48               ....PTQCVQAQCFDPLVRNCVACN.LFRT.PEPRP............
G1LRZ9_AILME/18-47                   ....PTQCVQAECFDPLVRNCVACK.LFRT.SEPRP............
G1S0G7_NOMLE/16-45                   ....PTPCVPAECFDLLVRHCVACG.LLRT.PRPKP............
A0A226NWQ2_COLVI/17-48               ...a--SCLSSQCFDPLTRSCVMCSeLF--.-----gdnttepsp...
A0A093IQ86_DRYPU/14-44               ....PSSCLSSQCFDLLTKSCVECSeLFK-.-----dnttvp......
F2YU84_HORSE/16-45                   ....PTQCAPAQCFDPLVRKCVACH.LLRT.PEPG-s...........
A0A2Y9KPP4_ENHLU/19-48               ....PTQCVQAQCFDPLVRNCVACN.LFRT.PEPRP............
A0A226MP14_CALSU/17-46               ...a--SCLSSQCFDPLTRSCVMCS.----.-----elfgdnatep..
A0A2R8VI78_MOUSE/16-29               ....PTQCNQTECFDPL--------.----.-----q...........
A0A1S2ZRM0_ERIEU/14-43               ....PSPCLEALCFDLLVRDCVACS.FLHT.SEPRP............
A0A493TDS8_ANAPP/17-46               ...a--ACLPSQCFDPLTRFCVRCAdLFK-.-----dnatep......
G3WFH9_SARHA/34-61                   pvkc-----PSLCFDELVRDCLPCD.LYQT.PK---at..........
G3WFH9_SARHA/12-38                   kcpf-------LCFDELIRKCLPCS.LHQT.P----vkcp........
H9KVT2_CALJA/16-45                   ....PTPCVPTECYDLLVRKCVDCR.LLRR.SPPK-t...........
G3U9C5_LOXAF/16-45                   ....PTLCGQAECFDLLLRVCVACR.LFRT.PEPSP............
A0A2Y9R6Z2_TRIMA/188-217             ....PTLCGQAECFDRLLRLCVACN.LFRT.PEPSP............
A0A2Y9L0T0_ENHLU/19-48               ....PTQCVQAQCFDPLVRNCVACN.LFRT.PEPRP............
G3R8S3_GORGO/16-45                   ....PTPCVPAECFDLLVRHCVACG.LLRT.PRPKP............
A0A2Y9QB52_DELLE/22-50               ...p--QCLQTQCFDPLVRKCVACS.LLRT.TEPRP............
TR13C_HUMAN/16-45                    ....PTPCVPAECFDLLVRHCVACG.LLRT.PRPKP............
#=GR TR13C_HUMAN/16-45         SS    ....----BTTEEEETTTTEEEEGG.GSSS.--S--............
A0A096NKC9_PAPAN/16-45               ....PTPCVPAECFDLLVRHCVACG.LLRT.PRPKP............
A0A1U7RXT6_ALLSI/14-42               ...s--DCPQDLCFDKLTKQCLSCH.LFGI.SNT--dt..........
Q3SXS7_MOUSE/19-48                   ....PTQCNQTECFDPLVRNCVSCE.LFHT.PDTGH............
A0A091W0J0_NIPNI/16-45               ...p--SCLSPQCFDLLTKSCVKCSdLF--.-----kdnttlp.....
A0A2U3ZCW5_ODORO/19-48               ....PTQCVQAECFDPLVRNCVACK.LFRT.PEPRP............
A0A099ZNP1_TINGU/13-45               ...s-TSCLPSQCFDSLTKSCVKCY.----.-----elykdnttepah
G1NHN5_MELGA/17-48                   ...a--SCLSSQCFDPLTRSCVMCSeLF--.-----gdnttepap...
H2P4K9_PONAB/1-29                    ....-TPCIPAECFDLLVRHCVACG.LLRT.PRPKP............
A0A0A0A421_CHAVO/15-42               ....-SSCLSSQCFDPLTRSCVQCSdL---.-----fkenat......
A0A091FVM1_9AVES/13-38               ....-SSCLFPECFDTLTRSCIDCS.----.-----elfkdn......
A0A2K5SC14_CEBCA/16-45               ....PTPCVPTECYDLLVRKCVDCR.LLRK.SPPK-t...........
A0A1A6GSF7_NEOLE/19-48               ....PTPCDQTLCFDPLVRHCVACK.LLRT.PDS--pq..........
A0A3Q2I3M6_HORSE/16-45               ....PTQCAPAQCFDPLVRKCVACH.LLRT.PEPG-s...........
TR13C_MOUSE/19-48                    ....PTQCNQTECFDPLVRNCVSCE.LFHT.PDTGH............
F1PL17_CANLF/17-46                   ....PTRCVQAECFDPLVRNCVACK.LLWT.PEPRP............
A0A2I0MJJ4_COLLI/20-50               ....-SSCLSSQCFDTLTKLCVECSdLLK-.-----dhttept.....
A0A2K6GIX6_PROCO/16-45               ....PTPCDPAQCFDLLVRHCVACK.LLRT.PEPRP............
A0A1U7TUV1_TARSY/16-45               ....PTPCVQAECFDLLVRHCVACE.FLHT.PQ---lrp.........
A0A287AJ47_PIG/16-45                 ....PTQCLQTQCFDLLVRNCVACS.LLRT.PDPGP............
A0A2Y9KN04_ENHLU/19-48               ....PTQCVQAQCFDPLVRNCVACN.LFRT.PEPRP............
A0A091HID2_CALAN/14-44               ....PSSCLYPQCFDPLTRSCVKCSdLFK-.-----nnttlp......
A0A3Q0CJZ6_MESAU/46-75               ....PTPCVQTLCFDPLVRHCVACN.LLRT.PDPLH............
#=GC SS_cons                         ....----BTTEEEETTTTEEEEGG.GSSS.--S--............
#=GC seq_cons                        ....PTpClpupCFDsLVRpCVuCp.Lh+T.scs..............
//
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