GenomeNet

Database: Pfam
Entry: BaffR-Tall_bind
LinkDB: BaffR-Tall_bind
Original site: BaffR-Tall_bind 
#=GF ID   BaffR-Tall_bind
#=GF AC   PF09256.10
#=GF DE   BAFF-R, TALL-1 binding
#=GF AU   Sammut SJ;0000-0003-4472-904X
#=GF SE   pdb_1oqe
#=GF GA   21.00 21.00;
#=GF TC   21.10 21.20;
#=GF NC   20.80 19.60;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 45638612 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   12721620
#=GF RT   Ligand-receptor binding revealed by the TNF family member
#=GF RT   TALL-1. 
#=GF RA   Liu Y, Hong X, Kappler J, Jiang L, Zhang R, Xu L, Pan CH, Martin
#=GF RA   WE, Murphy RC, Shu HB, Dai S, Zhang G; 
#=GF RL   Nature. 2003;423:49-56.
#=GF DR   INTERPRO; IPR015336;
#=GF DR   SCOP; 1oqe; fa;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   Members of this family, which are predominantly found in the
#=GF CC   tumour necrosis factor receptor superfamily member 13c, BAFF-R,
#=GF CC   are required for binding to tumour necrosis factor ligand TALL-1
#=GF CC   [1].
#=GF SQ   71
#=GS H0W812_CAVPO/16-45      AC H0W812.2
#=GS A0A093H8L8_STRCA/13-42  AC A0A093H8L8.1
#=GS A0A091LDF4_CATAU/16-41  AC A0A091LDF4.1
#=GS K7G7Y0_PELSI/14-35      AC K7G7Y0.1
#=GS G1T4W9_RABIT/19-47      AC G1T4W9.1
#=GS A0A091KDM8_COLST/15-39  AC A0A091KDM8.1
#=GS A0A091PJ25_APAVI/16-44  AC A0A091PJ25.1
#=GS H0XRB7_OTOGA/19-48      AC H0XRB7.1
#=GS A0A091R3S8_9GRUI/16-43  AC A0A091R3S8.1
#=GS L5K9E1_PTEAL/16-45      AC L5K9E1.1
#=GS M3WQA3_FELCA/19-48      AC M3WQA3.2
#=GS A0A091NSZ2_9PASS/16-44  AC A0A091NSZ2.1
#=GS A0A091LK81_9GRUI/15-42  AC A0A091LK81.1
#=GS A0A091HDJ8_BUCRH/16-44  AC A0A091HDJ8.1
#=GS W5QBP3_SHEEP/22-47      AC W5QBP3.1
#=GS M3YY53_MUSPF/19-48      AC M3YY53.1
#=GS A0A151NHU1_ALLMI/14-42  AC A0A151NHU1.1
#=GS D4A281_RAT/19-48        AC D4A281.2
#=GS A0A087VKH9_BALRE/2-21   AC A0A087VKH9.1
#=GS A0A286Y666_CAVPO/16-45  AC A0A286Y666.1
#=GS A0A1V4JB67_PATFA/20-50  AC A0A1V4JB67.1
#=GS A0A091S759_NESNO/15-43  AC A0A091S759.1
#=GS A0A1U8BTI9_MESAU/19-48  AC A0A1U8BTI9.1
#=GS F1NLV1_CHICK/17-46      AC F1NLV1.1
#=GS A0A091IRU1_EGRGA/16-43  AC A0A091IRU1.1
#=GS A0A091XCI0_OPIHO/15-44  AC A0A091XCI0.1
#=GS A0A2I0MJJ4_COLLI/20-51  AC A0A2I0MJJ4.1
#=GS A0A093ER89_9AVES/16-41  AC A0A093ER89.1
#=GS U3I1L0_ANAPL/17-38      AC U3I1L0.1
#=GS A0A091PKA5_LEPDC/16-45  AC A0A091PKA5.1
#=GS G5BPQ7_HETGA/22-51      AC G5BPQ7.1
#=GS F6YQZ6_ORNAN/19-48      AC F6YQZ6.1
#=GS G3IBR9_CRIGR/2-31       AC G3IBR9.1
#=GS H2QLT1_PANTR/16-45      AC H2QLT1.2
#=GS S9XLJ2_CAMFR/21-50      AC S9XLJ2.1
#=GS Q3U106_MOUSE/19-48      AC Q3U106.1
#=GS G1LRZ9_AILME/18-47      AC G1LRZ9.1
#=GS G1S0G7_NOMLE/16-45      AC G1S0G7.2
#=GS G3WFH9_SARHA/12-37      AC G3WFH9.1
#=GS A0A226NWQ2_COLVI/17-48  AC A0A226NWQ2.1
#=GS A0A226MP14_CALSU/17-46  AC A0A226MP14.1
#=GS A0A1W0XBI3_HYPDU/54-76  AC A0A1W0XBI3.1
#=GS A0A1S2ZRM0_ERIEU/14-43  AC A0A1S2ZRM0.1
#=GS A0A091FVM1_9AVES/13-37  AC A0A091FVM1.1
#=GS G3WFH9_SARHA/34-61      AC G3WFH9.1
#=GS H9KVT2_CALJA/16-45      AC H9KVT2.1
#=GS G3U9C5_LOXAF/16-45      AC G3U9C5.1
#=GS G3R8S3_GORGO/16-45      AC G3R8S3.2
#=GS TR13C_HUMAN/16-45       AC Q96RJ3.1
#=GS TR13C_HUMAN/16-45       DR PDB; 3V56 L; 23-34;
#=GS TR13C_HUMAN/16-45       DR PDB; 2HFG R; 16-39;
#=GS TR13C_HUMAN/16-45       DR PDB; 1OSX A; 17-42;
#=GS TR13C_HUMAN/16-45       DR PDB; 1OQE N; 1-24;
#=GS TR13C_HUMAN/16-45       DR PDB; 1OQE O; 1-30;
#=GS TR13C_HUMAN/16-45       DR PDB; 1OQE L; 1-30;
#=GS TR13C_HUMAN/16-45       DR PDB; 1MPV A; 23-34;
#=GS TR13C_HUMAN/16-45       DR PDB; 1OQE K; 1-30;
#=GS TR13C_HUMAN/16-45       DR PDB; 1OQE R; 1-30;
#=GS TR13C_HUMAN/16-45       DR PDB; 1OQE P; 1-30;
#=GS TR13C_HUMAN/16-45       DR PDB; 1OQE M; 1-30;
#=GS TR13C_HUMAN/16-45       DR PDB; 1OQE Q; 1-30;
#=GS A0A091U059_PHALP/16-44  AC A0A091U059.1
#=GS A0A096NKC9_PAPAN/16-45  AC A0A096NKC9.2
#=GS A0A1U7RXT6_ALLSI/14-42  AC A0A1U7RXT6.1
#=GS F6VS44_HORSE/19-47      AC F6VS44.1
#=GS A0A099ZNP1_TINGU/13-45  AC A0A099ZNP1.1
#=GS G1NHN5_MELGA/17-48      AC G1NHN5.1
#=GS H2P4K9_PONAB/1-29       AC H2P4K9.1
#=GS A0A0A0A421_CHAVO/15-42  AC A0A0A0A421.1
#=GS A0A1A6GSF7_NEOLE/19-48  AC A0A1A6GSF7.1
#=GS A0A087QLV5_APTFO/17-44  AC A0A087QLV5.1
#=GS A0A091W0J0_NIPNI/16-44  AC A0A091W0J0.1
#=GS TR13C_MOUSE/19-48       AC Q9D8D0.1
#=GS F1MJD0_BOVIN/16-45      AC F1MJD0.2
#=GS F1PL17_CANLF/17-46      AC F1PL17.2
#=GS A0A093IQ86_DRYPU/14-43  AC A0A093IQ86.1
#=GS A0A093ELK8_TAUER/14-41  AC A0A093ELK8.1
#=GS A0A1U7TUV1_TARSY/16-45  AC A0A1U7TUV1.1
#=GS A0A287AJ47_PIG/16-45    AC A0A287AJ47.1
#=GS A0A093N7X7_PYGAD/17-44  AC A0A093N7X7.1
#=GS A0A093J756_EURHL/15-43  AC A0A093J756.1
#=GS A0A0Q3PDH1_AMAAE/22-52  AC A0A0Q3PDH1.1
#=GS A0A091HID2_CALAN/14-44  AC A0A091HID2.1
H0W812_CAVPO/16-45                 ......PTRCVQTECFDHLVRHCVSCR.LL..RTPDSQ-a...........
A0A093H8L8_STRCA/13-42             .....s-TSCLPSQCFDPLIRSCVECS.KL..-------ykdntkp.....
A0A091LDF4_CATAU/16-41             ......-SSCLSSECFDLLTRSCVKCS.--..-------dlfkdn......
K7G7Y0_PELSI/14-35                 .....a--TCSQSLCFDILTKACVSCS.--..-------el..........
G1T4W9_RABIT/19-47                 ......PTSCVQAQCFDPLTRHCVACY.LL..HIPP---aa..........
A0A091KDM8_COLST/15-39             ......-SSCLSPHCFDLLTRSCVKCS.--..-------dlfkd.......
A0A091PJ25_APAVI/16-44             ......-SSCLSSQCFDLLTKSCVKCD.LF..N------dnttlp......
H0XRB7_OTOGA/19-48                 ......PTSCYPAQCFDPLLRLCVDCE.LF..RTPES--pa..........
A0A091R3S8_9GRUI/16-43             ......-SSCLSSQCFDLLTKSCVKCS.--..-------dlfkdnat....
L5K9E1_PTEAL/16-45                 ......PTQCVQAQCFDPLVRNCVACK.LF..RTPEPGP............
M3WQA3_FELCA/19-48                 ......PTKCVVDKCFDPLVRKCVDCR.LL..RTPEPGP............
A0A091NSZ2_9PASS/16-44             .....p--SCLSTECFDTLTRSCIKCS.--..-------dlfkdnttl...
A0A091LK81_9GRUI/15-42             ......-SPCLSSQCFDPLTRSCVKCS.--..-------dlfkdnat....
A0A091HDJ8_BUCRH/16-44             ......-SSCLSSQCFDLLTRSCVKCS.--..-------dlfkdnttl...
W5QBP3_SHEEP/22-47                 ....rr------PRCSAPLVRICVACS.LL..RTTEP--rl..........
M3YY53_MUSPF/19-48                 ......PTQCVQAQCFDPLVRNCVACN.LF..RTPEPRP............
A0A151NHU1_ALLMI/14-42             .....s--DCPQDLCFDKLTKQCLSCH.LF..GISNT--dt..........
D4A281_RAT/19-48                   .....s-TQCNQTECFDPLVRNCVSCE.LF..YTPETRH............
A0A087VKH9_BALRE/2-21              ......PSPCLSSQCFDLLTKSCV---.--..-------kg..........
A0A286Y666_CAVPO/16-45             ......PTRCVQTECFDHLVRHCVSCR.LL..RTPEPR-a...........
A0A1V4JB67_PATFA/20-50             .....s--SCLSSQCFDTLTKLCVECSdLL..K------dhttepa.....
A0A091S759_NESNO/15-43             ......-SSCLSSQCFDLLTRSCVKCS.--..-------dlfkentkp...
A0A1U8BTI9_MESAU/19-48             ......PTPCVQTLCFDPLVRHCVACN.LL..RTPDPLH............
F1NLV1_CHICK/17-46                 .....a--SCLSSQCFDPLTRSCVMCS.--..-------elfgdnttdp..
A0A091IRU1_EGRGA/16-43             ......-SSCLSSQCFDLLTRSCVKCS.--..-------dlfkdntt....
A0A091XCI0_OPIHO/15-44             .....s--SCLSSQCFDLLTRSCVKCSdLF..K------enttlp......
A0A2I0MJJ4_COLLI/20-51             .....s--SCLSSQCFDTLTKLCVECSdLLkdHTTEP--tr..........
A0A093ER89_9AVES/16-41             ......-SSCLSSQCFDPLTKSCVKCS.--..-------dlfkdn......
U3I1L0_ANAPL/17-38                 .....a--ACLPSQCFDPLTRFCVRCS.--..-------dl..........
A0A091PKA5_LEPDC/16-45             .....s--SCLSSQCFDILTRSCVKCSdLF..RD-----nttlp.......
G5BPQ7_HETGA/22-51                 ......PTRCIQAECFDHLVRHCVACS.LL..RTAEPR-a...........
F6YQZ6_ORNAN/19-48                 ......PSACGQPNCYDPLTRGCVSCF.LL..QFPGT--ve..........
G3IBR9_CRIGR/2-31                  .....t-TPCVQTLCFDPLVRHCVACN.LL..RTPDPLH............
H2QLT1_PANTR/16-45                 ......PTPCVPAECFDLLVRHCVACG.LL..RTPRPKP............
S9XLJ2_CAMFR/21-50                 ......PTQCLQTQCFDVLVRNCVACS.LL..RTPEPRP............
Q3U106_MOUSE/19-48                 ......PTQCNQTECFDPLVRNCVSCE.LF..HTPDTGH............
G1LRZ9_AILME/18-47                 ......PTQCVQAECFDPLVRNCVACK.LF..RTSEPRP............
G1S0G7_NOMLE/16-45                 ......PTPCVPAECFDLLVRHCVACG.LL..RTPRPKP............
G3WFH9_SARHA/12-37                 ..kcpf-------LCFDELIRKCLPCS.LH..QTP----vkc.........
A0A226NWQ2_COLVI/17-48             .....a--SCLSSQCFDPLTRSCVMCSeLF..-------gdnttepsp...
A0A226MP14_CALSU/17-46             .....a--SCLSSQCFDPLTRSCVMCS.--..-------elfgdnatep..
A0A1W0XBI3_HYPDU/54-76             dcgtla-----VEQCFDPLTNGCVACH.--..-------a...........
A0A1S2ZRM0_ERIEU/14-43             ......PSPCLEALCFDLLVRDCVACS.FL..HTSEPRP............
A0A091FVM1_9AVES/13-37             ......-SSCLFPECFDTLTRSCIDCS.--..-------elfkd.......
G3WFH9_SARHA/34-61                 ...pvk---C-PSLCFDELVRDCLPCD.LY..QTPK---at..........
H9KVT2_CALJA/16-45                 ......PTPCVPTECYDLLVRKCVDCR.LL..RRSPPK-t...........
G3U9C5_LOXAF/16-45                 ......PTLCGQAECFDLLLRVCVACR.LF..RTPEPSP............
G3R8S3_GORGO/16-45                 ......PTPCVPAECFDLLVRHCVACG.LL..RTPRPKP............
TR13C_HUMAN/16-45                  ......PTPCVPAECFDLLVRHCVACG.LL..RTPRPKP............
#=GR TR13C_HUMAN/16-45       SS    ......----BTTEEEETTTTEEEEGG.GS..SS--S--............
A0A091U059_PHALP/16-44             ......-SSCLSSQCFDLLIRSCVKCS.--..-------dlfkdnttl...
A0A096NKC9_PAPAN/16-45             ......PTPCVPAECFDLLVRHCVACG.LL..RTPRPKP............
A0A1U7RXT6_ALLSI/14-42             .....s--DCPQDLCFDKLTKQCLSCH.LF..GISNT--dt..........
F6VS44_HORSE/19-47                 ......PTQCAPAQCFDPLVRKCVA-H.LL..RTPEPG-s...........
A0A099ZNP1_TINGU/13-45             .....s-TSCLPSQCFDSLTKSCVKCY.--..-------elykdnttepah
G1NHN5_MELGA/17-48                 .....a--SCLSSQCFDPLTRSCVMCS.--..-------elfgdnttepap
H2P4K9_PONAB/1-29                  ......-TPCIPAECFDLLVRHCVACG.LL..RTPRPKP............
A0A0A0A421_CHAVO/15-42             ......-SSCLSSQCFDPLTRSCVQCS.--..-------dlfkenat....
A0A1A6GSF7_NEOLE/19-48             ......PTPCDQTLCFDPLVRHCVACK.LL..RTPDS--pq..........
A0A087QLV5_APTFO/17-44             .....s---CLSSQCFDLLTRSCVKCS.--..-------dlfkdnttl...
A0A091W0J0_NIPNI/16-44             .....p--SCLSPQCFDLLTKSCVKCS.--..-------dlfkdnttl...
TR13C_MOUSE/19-48                  ......PTQCNQTECFDPLVRNCVSCE.LF..HTPDTGH............
F1MJD0_BOVIN/16-45                 ......PTQCLQTQCFDPLVRNCVACS.LL..RTTGP--rl..........
F1PL17_CANLF/17-46                 ......PTRCVQAECFDPLVRNCVACK.LL..WTPEPRP............
A0A093IQ86_DRYPU/14-43             ......PSSCLSSQCFDLLTKSCVECSeLF..-------kdnttv......
A0A093ELK8_TAUER/14-41             .....s---CLSSQCFDLLTRSCVKCS.--..-------dlfkdnttl...
A0A1U7TUV1_TARSY/16-45             ......PTPCVQAECFDLLVRHCVACE.FL..HTPQ---lrp.........
A0A287AJ47_PIG/16-45               ......PTQCLQTQCFDLLVRNCVACS.LL..RTPDPGP............
A0A093N7X7_PYGAD/17-44             .....s---CLSSQCFDLLTRSCVKCS.--..-------dlfkdnttl...
A0A093J756_EURHL/15-43             ......-SSCLSSQCFDLLTRSCVKCS.--..-------dlfkdnttl...
A0A0Q3PDH1_AMAAE/22-52             .....s--SCLSSQCFDLLTKSCVKCSdLF..K------enttepa.....
A0A091HID2_CALAN/14-44             ......PSSCLYPQCFDPLTRSCVKCSdLF..K------nnttlp......
#=GC SS_cons                       ......----BTTEEEETTTTEEEEGG.GS..SS--S--............
#=GC seq_cons                      .......osClsopCFD.LsRsCVtCu.Lh.........t...........
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