GenomeNet

Database: Pfam
Entry: Bunya_NS-S
LinkDB: Bunya_NS-S
Original site: Bunya_NS-S 
#=GF ID   Bunya_NS-S
#=GF AC   PF01104.18
#=GF DE   Bunyavirus non-structural protein NS-s
#=GF AU   Finn RD;0000-0001-8626-2148
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF SE   Pfam-B_880 (release 3.0)
#=GF GA   25.00 25.00;
#=GF TC   25.00 25.10;
#=GF NC   21.90 21.70;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   8760423
#=GF RT   The S RNA genomic sequences of Inkoo, San Angelo, Serra do
#=GF RT   Navio, South River and Tahyna bunyaviruses. 
#=GF RA   Huang C, Shope RE, Spargo B, Campbell WP; 
#=GF RL   J Gen Virol 1996;77:1761-1768.
#=GF DR   INTERPRO; IPR000797;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   The NS-s protein is encoded by the S RNA. This segment also
#=GF CC   encodes for the N protein.  These two proteins are encoded by
#=GF CC   overlapping reading frames.
#=GF SQ   20
#=GS NSS_BUNYW/2-92         AC P16494.1
#=GS W8CZ95_9VIRU/3-83      AC W8CZ95.1
#=GS Q65529_9VIRU/1-83      AC Q65529.1
#=GS S5XAL3_9VIRU/28-128    AC S5XAL3.1
#=GS B0F1A8_9VIRU/2-92      AC B0F1A8.1
#=GS A0A088MJ28_9VIRU/2-92  AC A0A088MJ28.1
#=GS NSS_BUNLC/2-92         AC P04874.1
#=GS Q14TF8_9VIRU/2-92      AC Q14TF8.1
#=GS NSS_BUNL8/2-92         AC Q8JPQ9.1
#=GS A0A142J8F5_9VIRU/7-97  AC A0A142J8F5.1
#=GS A0A088MFR5_9VIRU/2-92  AC A0A088MFR5.1
#=GS A0A097C052_9VIRU/1-91  AC A0A097C052.1
#=GS W8CZ89_9VIRU/1-62      AC W8CZ89.1
#=GS A0A0R7FK66_9VIRU/1-79  AC A0A0R7FK66.1
#=GS B3U4Y1_9VIRU/2-92      AC B3U4Y1.1
#=GS Q9J973_9VIRU/1-91      AC Q9J973.1
#=GS A0A088MFE7_9VIRU/1-92  AC A0A088MFE7.1
#=GS Q8QHN1_9VIRU/1-91      AC Q8QHN1.1
#=GS A0A0M4JCT4_9VIRU/2-92  AC A0A0M4JCT4.1
#=GS A0A0R7FKB0_9VIRU/5-93  AC A0A0R7FKB0.1
NSS_BUNYW/2-92                    ....MSLLTPAVLLTQRSHTLTLSVSTPLGL.VMTTYESSTLKDARLKLVSQKEVNGKLHLTLGAGRLLYIIRIFLATGTTQFLTMVLPSTASVD-s.....................
W8CZ95_9VIRU/3-83                 .tga----QLPLLLILNKPTMNLLATTGRAS.ASIMLEFSSSARMRLNRNCVRALRRSLCLNLAVGRSRLLIIITPEMHQTRLQIVI---------......................
Q65529_9VIRU/1-83                 ...m-----QQVRLTRSSNMLHLNVQTQQGL.ITTILESSISMGRDPKILSLREVNNRLFLTLEAGEFLWLIHIFLETGTVQSSMIHSH-------fie...................
S5XAL3_9VIRU/28-128               inqg----TLNLFLILDRHTKCLSVLTDKGYrTSVRYVSSCLRLDNVSLRCVKRGYHKLILALEHWYFRWLIAIIPTSGRIVS-------------lgqhspfdvcpgslpctscsst
B0F1A8_9VIRU/2-92                 ....MSHPQVQMDLIQMQGLWHLWLTMGNLS.VCQPLGSSSLMQQKPKLLSLVNRSGKLLLNLESGRWKLSIIIFLETGTTQLVTTILPSIGFQDI......................
A0A088MJ28_9VIRU/2-92             ....MSSLLPKMDLILINNTWHLKLLQEQGL.ILFPLGSSSSMPGKPKINSLVDQSQRLTLNLAHGRWRWSITIFKETGTMLSATRILQSTDCQDI......................
NSS_BUNLC/2-92                    ....MSHQQVQMDLILMQGIWTSVLKMQNHS.TLLQLGSSSSMPQRPRLLSRVSQRGRLTLNLESGRWRLSIIIFLETGTTQLVTTILPSTDYLG-i.....................
Q14TF8_9VIRU/2-92                 ....MSLLTPAVLLTQRLHTLTLSVSTPLGL.VMTTLESSTLKDARLKLVSQKEVNGRLRLTLGAGRLLYLIQIFLGTGTVQFQTMVLPSTDSVD-s.....................
NSS_BUNL8/2-92                    ....MSHQQVQMDLILMQGIWTSVLKMQNYS.TLLQLGSSSSMPQRPRLLSRVSQRGRLTLNLESGRWRLSIIIFLETGTTQLVTTILPSTDYLG-i.....................
A0A142J8F5_9VIRU/7-97             ....MSTQDLQVGLIQIRGTLTFSLSMGTTS.ISIPLGLSFSMLQRLRQVSRTDLSDRCEFDLEIGRLLYKITIFLQTGTTSCLIMTSHSTGSPDT......................
A0A088MFR5_9VIRU/2-92             ....MNLYGFKVDLILKDNTWNLSVVSEMGS.VCLPLKSSSSMPGKPKINSLLDLTGRLVLNLGHGRWRWSITIFKATGTVQSATWISPCTDCQGI......................
A0A097C052_9VIRU/1-91             .mir---RQALALMIQRRNTMSLLVLTGTSL.LQQTLNVSSCMHVQPRLVWQRTRRNAERLLLDLGRLRLLITITEEPLRLQCRTMIIPCTAFPDI......................
W8CZ89_9VIRU/1-62                 ...m---------------------NTGRSS.LLRILECSSSVRMRLNRSSVRVRQSSLTLNLALGRSLLLTTITLPTQQIRSLM-----------vn....................
A0A0R7FK66_9VIRU/1-79             ..ml-----VEVLITQQMNTIRLWVSTENFS.QLITLESSSSTLQRPKLRWLNSRLRQLRLRLEHSSSSWLITIELDRLSVRLRTM----------s.....................
B3U4Y1_9VIRU/2-92                 ....MSTPSIPMRLILMQDMWHFQTTIQGRL.ISLQLGHFSSMPQRPRVSSVINLTRRLNLNLETGRWRLSIIIFLETGTIQLVKTILPSTGFQDI......................
Q9J973_9VIRU/1-91                 ....MYHNGLHLHLIRRQHMWHLKLDTDKCS.MLVLLESSSSTKRRPKMSYVRHRGPWLTLLLVGSNLQWLITISHSSSRIQCRTTVLPCTVCQDT......................
A0A088MFE7_9VIRU/1-92             .mtl--HPLVKVDMIPIGTIWHLRLELERES.VLCRLGSSSSMPKKPRISSVVNLTRRLILNLEHGRWRWSIIIFRETETVRLVTWILPCIGSLD-s.....................
Q8QHN1_9VIRU/1-91                 ....MFLNGISLRLTRRSGMWHLLLNMGPSS.ISIPLESSSSIRRRPRWCSVRRHNQVLILHLVASNLHWLITIFPNTQQILCQTLPSLSTASRDI......................
A0A0M4JCT4_9VIRU/2-92             ....MSHPQVQMDLILMQGMWHLWLTMGSRS.VCQPLGSSSLMPQRPKLLSLVSRSGRLHLSLESGRWRSSIIIFLETGTTQLVTTILPCTGFQDI......................
A0A0R7FKB0_9VIRU/5-93             ..mi----DLQVHLTLRSNTWHLLIDTTKSS.LLTTLGPSSSMQETPRVRWQILTRTRYALILEHSSWNWLIIIDRELRNEWLLTTSTRFIASPDI......................
#=GC seq_cons                     ....M.h.plplcLIhhpshhpLhlspspsS.lhh.LtSSSSM.pRP+lsSlhstss+LpLsL-tGRh+ahItIFh-TGTsphhThlh.sTs..D.......................
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