#=GF ID   Calici_coat
#=GF AC   PF00915.24
#=GF DE   Calicivirus coat protein
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF SE   Pfam-B_202 (release 3.0)
#=GF GA   20.00 20.00;
#=GF TC   20.00 20.10;
#=GF NC   19.80 19.80;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -E 1000 -Z 75585367 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF CL   CL0055
#=GF RC   Identification of the capsid protein.
#=GF RN   [1]
#=GF RM   1840711
#=GF RT   Rabbit hemorrhagic disease virus--molecular cloning and
#=GF RT   nucleotide sequencing of a calicivirus genome. 
#=GF RA   Meyers G, Wirblich C, Thiel H-J; 
#=GF RL   Virology 1991;184:664-676.
#=GF DR   INTERPRO; IPR004005;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF SQ   41
#=GS A0A1Y0JW69_9VIRU/2500-2670  AC A0A1Y0JW69.1
#=GS A0A1L3KH73_9VIRU/2264-2502  AC A0A1L3KH73.1
#=GS A0A1L3KHF0_9VIRU/402-556    AC A0A1L3KHF0.1
#=GS A0A1L3KLT4_9VIRU/2084-2273  AC A0A1L3KLT4.1
#=GS A0A1L3KHD1_9VIRU/3-222      AC A0A1L3KHD1.1
#=GS A0A1L3KJG8_9VIRU/2-247      AC A0A1L3KJG8.1
#=GS A0A1L3KJ39_9VIRU/7-285      AC A0A1L3KJ39.1
#=GS A0A1L3KJB8_9VIRU/6-287      AC A0A1L3KJB8.1
#=GS A0A1L3KM53_9VIRU/7-274      AC A0A1L3KM53.1
#=GS A0A1L3KJ89_9VIRU/2-289      AC A0A1L3KJ89.1
#=GS A0A1L3KLY7_9VIRU/4-185      AC A0A1L3KLY7.1
#=GS A0A1L3KME9_9VIRU/2365-2612  AC A0A1L3KME9.1
#=GS A0A1L3KKK3_9VIRU/2341-2514  AC A0A1L3KKK3.1
#=GS A0A1L3KJM2_9VIRU/5-263      AC A0A1L3KJM2.1
#=GS POLG_RHDVF/1768-2064        AC P27410.1
#=GS CAPSD_VESVA/137-420         AC P89681.3
#=GS A0A1L3KH47_9VIRU/306-550    AC A0A1L3KH47.1
#=GS A0A1L3KJK1_9VIRU/4-280      AC A0A1L3KJK1.1
#=GS CAPSD_FCVUR/108-395         AC Q66915.1
#=GS A0A1L3KKS4_9VIRU/2292-2488  AC A0A1L3KKS4.1
#=GS A0A1L3KLU5_9VIRU/6-240      AC A0A1L3KLU5.1
#=GS A0A1L3KJB2_9VIRU/10-238     AC A0A1L3KJB2.1
#=GS A0A1L3KHA6_9VIRU/1841-2131  AC A0A1L3KHA6.1
#=GS A0A1L3KJ66_9VIRU/163-332    AC A0A1L3KJ66.1
#=GS A0A1L3KH48_9VIRU/4-251      AC A0A1L3KH48.1
#=GS A0A1B2RVM9_9VIRU/2-268      AC A0A1B2RVM9.1
#=GS POLG_SVSAP/1729-2012        AC Q672I1.1
#=GS A0A1L3KHA2_9VIRU/8-233      AC A0A1L3KHA2.1
#=GS A0A1L3KJC0_9VIRU/4-258      AC A0A1L3KJC0.1
#=GS A0A1L3KH69_9VIRU/333-536    AC A0A1L3KH69.1
#=GS A0A1L3KHP1_9VIRU/4-218      AC A0A1L3KHP1.1
#=GS A0A1L3KM37_9VIRU/30-258     AC A0A1L3KM37.1
#=GS A0A1L3KLV8_9VIRU/567-834    AC A0A1L3KLV8.1
#=GS A0A1L3KM48_9VIRU/4-233      AC A0A1L3KM48.1
#=GS A0A1L3KHD3_9VIRU/396-605    AC A0A1L3KHD3.1
#=GS A0A1B2RVQ1_9VIRU/1-254      AC A0A1B2RVQ1.1
#=GS CAPSD_NVN68/2-294           AC Q83884.2
#=GS POLG_BECN1/1662-1941        AC Q288N7.1
#=GS A0A1L3KHK3_9VIRU/6-235      AC A0A1L3KHK3.1
#=GS I6YQK4_PASI1/366-501        AC I6YQK4.1
#=GS A0A1L3KM75_9VIRU/2-295      AC A0A1L3KM75.1
A0A1Y0JW69_9VIRU/2500-2670             .........................................................iefdlkdlvysqfidsdt------.-----.---------------------..-----..--.-......------.---..--------...--..-------.--..-Q.....YTFTDDSAQ...GTII........FQIP.YDP...........Ts.qfV.......N..............P..Y.........I.....RQ.....YVSL..HER.YAGALLFRVTIVGNATFSGIVGMAWQP...K.....A....IagT....V...A...K...I...S...E...L...HKY...S...Y.FGKNIT.LP..D...NEVMVLHDA.........RK.Q.......FF.Y.....R...E...........T..........A....D........A......D.....VasrP............H.......L....V........C....YVH..MTAVSPLR..EG..--..IT..IRIRI---------------..--.....----------..------.-------.-------------...------------------...-------------asklataad.......................................................................................
A0A1L3KH73_9VIRU/2264-2502             .................................................................megtpqnram------.---AS.TATTGTEGVNAAATLTEG-AI..VSSVT..MN.P......VQAPVT.MLA..MGGIIQDI...R-..-DIAHNY.ID..HA.....TSYSVATGVv.vGTEV........FRMK.YGI...........S...gM.......N..............D..Y.........A.....QA.....YVNL..HNR.YAGPIEYRFHCVGNAALSGEVLFGWVP...D.....S....D..A....T...Y...T...L...Q...D...L...QKY...K...Y.FTMLLN.RN..V...TVEFTLGDA.........RQ.N.......GF.Y.....Rn.vT...........G..........D....D........A......T.....K...P............A.......I....V........C....MVY..NELLNPYG..VA..-G..AT..VFINVASRLSDSF-------..--.....----------..------.-------.-------------...------------------...-------------ilaepvldqtatvststvsgvl..........................................................................
A0A1L3KHF0_9VIRU/402-556               .............................................sptgnlanvdasdavnklsldskqeltids------.-----.---------------------..-----..--.-......-----R.TVG..LDGGDQMT...LE..SIQTRES.YL..TS.....FTMSASDLP...DTLL........WNSY.VTP...........N....Lfa...iqA..............P..Elh....mtpM.....AM.....LSQY..FSS.WQGSIKFRFQVVKSNFHKGRLIVRY-D...P.....R....S..H....S...A...T...V...D...N...A...TNY...T...R.VI----.--..-...---------.........--.-.......--.-.....-...-...........-..........-....-........-......-.....-...-............-.......-....-........-....---..--------..--..--..--..--------------------..--.....----------..------.-------.-------------...------------------...-------------dlaeeddfeiei....................................................................................
A0A1L3KLT4_9VIRU/2084-2273             ....................................................avtdkqmatvknakpsaagvepq------.-----.------------NINVPDVPV..SPPDQ..MS.PyaptatNATQQA.SQG..IGCVPLSV...P-..HIVGKYV.WN..ET.....ISITTNDEP...GKVL........WWRA.LHP...........S....T.......N..............P..Y.........A.....DW.....LTKP..FNA.WAGGMLFRATICANFLCAGKVVLVHWM...P.....N....Q..N....P...TlerT...L...E...E...V...TCQ...P...H.MMCDLK.NM..E...TTELLVEDE.........NP.T.......KW.H.....Y...Y...........-..........-....-........-......-.....-...-............-.......-....-........-....---..--------..--..--..--..--------------------..--.....----------..------.-------.-------------...------------------...-------------qpmpqmnt........................................................................................
A0A1L3KHD1_9VIRU/3-222                 ......................................tsdgltedlssnspptggvtseevqpdltadfqknvf------.-----.---------------------..-----..--.-......------.---..---THNTI...DS..YLVGHPF.VV..GH.....FSWNTNQVE...GTVL........HSLK.LHP...........S....N.......F.............pP..E.........L.....RA.....LVMM..YEY.WTGSVDVVLTIPGTGLHGGKLMVYSMP...P.....G....R..P....I...E...E...G...V..iE...Q...SIY...P...W.ISLDAK.EQ..S...SLAFQVQDQ.........CR.V.......KW.H.....Q...T...........St.......feE....E........D......Y.....G...R............T.......I....V........M....TVL..SKLIATTP..QA..--..SD..VRVVVSFAIRSDFRVSTLKP..--.....----------..------.-------.-------------...------------------...-------------mpftkpvata......................................................................................
A0A1L3KJG8_9VIRU/2-247                 ...........................................................advnnapvpqsdaamd------.-----.---------TS---TTPATPL..MSGIR..IV.P......DAPPVE.AVT..HTGNAGNF...ET..QYMHSQW.IQvpNI.....PTWSTGQLP...GTIL........WQSP.IHP...........M....I.......N..............R..C.........T.....DF.....MSQV..YSA.WSGGFDFKIKVVGTAFHGGWLAFTRVP...P.....H....VplS....S...L...K...R...V..dD...F...TMF...E...T.VYLDPK.AT..D...CADIQVMDQ.........RP.I.......LY.H.....L...N...........Tipl....repQ....D........G......E.....T...TrdqfldslsfggR.......L....V........M....WVS..GQLLTSST..GS..--..QT..IHVLIWTKPGAQFTFAQVIP..PG.....V---------..------.-------.-------------...------------------...-------------tdiggne.........................................................................................
A0A1L3KJ39_9VIRU/7-285                 ......................................qanssvsngldlpstveagahlpseiqtptpptvevp------.-----.---------------------..-----..--.-......------.--F..AAGEGNRL...DP..YFYEQFI.KV..EV.....FPWTTMDQP...GKVL........FVLK.LDP...........K...nI.......N..............K..Q.........L.....AY.....FLDA..YYA.WGGDIKLLLKVLGTSFHAGQLGIYYLP...P.....G....V..Dy..kN...Y...T...P...Q...E...L...SIF...P...W.EIVDVK.DI..N...LHEILMRDI.........RP.T.......KY.H.....M...L...........E..........D....Kpnd.pfyvQ......S.....G...G............T.......L....V........I....AAD..TQLSTSST..GV..--..NK..IYVSVWSKLAENFQVAYMIP..P-.....RELK------..------.-------.-------------...------------------...-------------pslnfsnefmaavnsifytgskslasapfridtidiqpvtirqtfngiyncftta.........................................
A0A1L3KJB8_9VIRU/6-287                 ...................................................qpgqgegeqipsmaasppmpdinl------.-----.---------------------..-----..--.-......PQSQSN.DIT..HGMQMLTF...DQ..WNVTQFR.FM..SS.....FSWNTHETP...GKVL........WFTP.ISP...........L...fL.......D..............T..N.........L.....AY.....YSKL..FNQ.WAGDFEFMFKVAGTGFHAGMLSFAKLP...P.....N....I..H....P...N...D...VqnpN...Q...L...SVF...P...W.SGVDPK.CL..E...PITEDGQDI.........RQ.V.......LF.H.....W...M...........N..........P....K........T......D.....A...F............N.......E....VnqiggylcA....FIN..LDLNTGVG..AA..QR..IS..VGVWVRAKP--NFQVRFVVP..I-.....--ALNEQIPS..SIAPCS.-------.-------------...------------------...-------------isenfnftfqqvyylastptvatlfviepasvkvlntgvyntfdldgkgns.............................................
A0A1L3KM53_9VIRU/7-274                 ..........................................nqapdvaaavtpapmpaapllqetagmpptmap------.-----.---------------------..-----..--.-......------.--Q..AAGMVNNY...DM..QFRVHKL.KV..KV.....IEWTKTQPV...GTVL........AVFP.IHP...........S....Q.......H..............P..W.........T.....DY.....ISRL..YNV.WAGAFRIEMQPVATHFHAGRVAMVRIP...P.....N....L..N....P...Y...D...MsipV...N...Y...TMF...D...F.VSIDAK.TP..D...PVALTPIDQ.........RR.L.......FY.H.....Y...V...........G..........E....EpvdgvwkpD......D.....I...G............G.......Y....V........M....LIV.dNMLVTSST..GV..DK..ID..INIYME---SDSFEFAQLKPlaPT.....SIALNPFSPG..FVSPFS.TEQKYA-.LHNIAVTKLSSV-...------------------...-------------pqfstkytlyvmds..................................................................................
A0A1L3KJ89_9VIRU/2-289                 .........................................................sqahipqptaesapaevf------.-----.----------ESTQAAPHTTT..VSGIG..NS.G......APPAEI.TQH..TLA-HNNI...DN..YFYTQFI.FL..DK.....FTWTTQNVA...GTML........WSMP.LHP...........R....A......fC..............K..E.........L.....AY.....LSAI..YNT.WGGGIEINFKIAGTGFHAGALAFARIP...P.....N....I..D....P...S...T...L...G...SdygY...TKF...E...Y.KVMDAK.TL..E...VDTVHIGDQ.........RQ.V.......NY.H.....Y...M..........vG..........D....P........K......D.....P...Kswd......iggT.......V....A........C....YVW..AGLNT-AA..TS..-T..QA..IQVVISMRLAPEFRFNQIRN..LTi...eSQENDQKIPT..-----S.TEYMFNN.-------------...------------------...-------------isrgtasadrftsvthlkvlpstikkldiqfspsaqgdg.........................................................
A0A1L3KLY7_9VIRU/4-185                 ........................................................grapavpdaeaaetgeiis------.-----.-----------TQ-TVPPTVP..ASRVA..SG.P......PPS--E.IVQ..HTGNANLI...DP..NILNQNI.LS..ST.....ITWSVNQPQ...NSVL........GTFY.VHP...........S....Y.......H..............L..Y.........L.....DY.....LSRI..YYT.WSGSLQYSVCVLGTGFHAGKIMLVRAP...P.....G....Y..D....LdslS...N...I...E...E...A...TGL...E...W.MALDPK.SI..I...PAELGLNDY.........RG.V.......NF.H.....M...T...........S..........I....P........A......-.....-...-............-.......-....-........-....---..--------..--..--..--..--------------------..--.....----------..------.-------.-------------...------------------...-------------dsrvtaa.........................................................................................
A0A1L3KME9_9VIRU/2365-2612             ............................................ttdrkpqvarkqmgeekysfdsfvdryqlir------.-----.---------------------..-----..--.-......------.---..--------...--..-------.--..-S.....FQWDDTQVQ...GTVL........DSRS.VPY...........Q...cI.......G..............S..T.........T.....KA.....AFNK..FCY.WSGDVEIKVQVQSTAFVCGKLIIVFAPfcdPar.asY....L..Q....L...P...S...L...I...S...M...SAA...P...N.VTVMAG.NT..T...EVTMMIPYA.........HY.K.......NY.L.....N...T...........D..........G....E........A.....gD.....P...F............S.......LlgtvS........V....VVF..NKLRVAAG..GT..DY..CT..VNVYSRFRNS---NFQMLRP..P-.....--P-------..------.-------.-------------...------------------...-------------idgnvpvhsfimhgaamsmaknvsgvvddvtdavsrvgavaeyaldapnvgv............................................
A0A1L3KKK3_9VIRU/2341-2514             ..................................................................skcaittpl------.-----.---------------------..-----..--.-......------.---..--------...--..-------.--..--.....---------...----........----.---...........-....-.......-..............-..-.........-.....GY.....ISQC..FSY.WRGSLQFRLDVICTALHAGALLVTFHP...Gcn.fvQ....S..E....K...I...R...L...T...E...V...SSF...S...F.VLSERT.SL..EftvPYVASTPYL.........KVgN.......IF.D.....D...R...........Sf........tD....E........T......C.....V...G............T.......V....N........I....SVM..NKLIGPST..VS..--..SN..VDVNIIISGGDDFEFAL---..--.....----------..------.-------.-------------...------------------...-------------ptlqnisrflygvtpqtlephgavdvqveersre..............................................................
A0A1L3KJM2_9VIRU/5-263                 ....................................aanqpdpgsgeifdstairnetplsavggqggptqeapq------.-----.---------------------..-----..--.-......------.---..HVGEVNTI...DQ..FLRVQSI.HL..ST.....TTWSTSADA...GTLL........FSVP.IHP...........S....F......tH..............V..Y.........L.....GH.....LWKM..YNA.WAGGTDFDLYINATGFHAGKLGQARIP...P.....N....I..H....P...S...T...L...R...S...IsdwTAF...E...Y.QVLDAK.TM..Q...GSCSSIIDQ.........RN.T.......MY.H.....Y...Q...........D..........F....D........E......N.....N...P............S.......Tf.ggY........F....CVF..--VIAPLA..TSstGA..TS..VSILIFSKPASNFTFAQLRP..LK.....SAQNNAVIPP..DL----.-------.-------------...------------------...-------------ekaldfrrfaaepvqgseiqgmtvhs......................................................................
POLG_RHDVF/1768-2064                   ..........................................................................g-KARAApQGEAAgTATTASVPGTTTDGMDPGVVA.tTSVIT..AE.N......SSASIA.TAG..IGGPPQQV...DQqeTWRTNFY.YN..DV.....FTWSVADAP...GSIL........YTVQ.HSP...........Q....N.......N..............P..F.........T.....AV.....LSQM..YAG.WAGGMQFRFIVAGSGVFGGRLVRAVIP...P.....G....I..E....I...G...P...G...L...E...V...RQF...P...H.VVIDAR.SL..E...PVTITMPDL.........RP.N.......MY.H.....P...T...........G..........D....P........G......L.....V...P............T.......L....V........L....SVY..NNLINPFG..GS..-T..SA..IQVTVETRPSEDFEFVMIRA..PS.....SKTVDSISPAglLTTPVL.TGVGNDN.RWNGQIVGLQPVP...GGFSTCNRHWNLNGSTYG...WSSPRFGDIDHRR................................................................................................
CAPSD_VESVA/137-420                    ..........................................................................l-RSTAD.VNSNF.TFRAESDGPGSTEIVTEEQGT..IVQQQ..PA.P......APTALA.TLA..TASTGKSV...EQ..EWMTFFS.YH..TS.....INWSTVESQ...GKVL........YSQA.LNP...........S....I.......N..............P..Y.........L.....DH.....ISKL..YST.WSGGIDVRFTVSGSGVFGGKLAALLVP...P.....G....V..E....P...I...E...S...V...S...M...LQY...P...H.VLFDAR.QT..E...PVIFTIPDI.........RK.T.......LF.H.....S...M...........D..........-....E........T......D.....T...T............K.......L....V........I....MVY..----KNGA..DT..-K..TT..CSITVETRPSADFTFALLKP..PG.....SLIKHGSIPS..DLIPRN.SAHWLGN.RWWSMISGFSVQP...RVFQ-SNRHFDFDSTTTG...WSTPYYIPIEITI................................................................................................
A0A1L3KH47_9VIRU/306-550               .................................mdgkdnstvlgassdvtihtmpgifstdvdemsfdyvkkksc------.-----.---------------------..-----..--.-......------.---..--------...--..------L.MK..AP.....RSWITGGAQ...GRILdsipvtpgYCDA.TSP...........Tt..vA.......N..............P..T........tL.....AY.....LSSM..FRY.WRGGITYRFSFAKTAFHSGRLRFAFVP...Km..lnS....S..P....I...V...S...G...G...E...P...LYM...T...HnWVIDLS.KS..S...EITFTIPYC.........SN.R.......AW.M.....P...V...........EvisndanlayR....D........S......S.....T...G............W.......L....V........I....QVL..TPLKKASN..AS..DT..VK..YMGW--ISGADDFE------..--.....----------..------.-------.-------------...------------------...-------------lavpdfatyvpstvapladipeetpaese...................................................................
A0A1L3KJK1_9VIRU/4-280                 .......................................................ahipqpdttsaagevydstq------.-----.--------------SSPPSNT..ISAIG..VP.G......PPPQ-E.VIQ..HTTSPNNI...DQ..YFYEQFI.YC..GN.....FNWSTSDPV...GKMM........WKLE.ISP...........K....N......fN..............S..T.........L.....AH.....LAAI..YNT.WGGGVTVNIQVAGTGFHAGKLAIARIP...Pn...lS....A..S....N...F...V...N...F...K...Y...TNF...E...W.MEMDVK.TL..Q...SVALNVQDQ.........RQ.V.......NY.H.....L...T...........V..........P....E........K......N.....S...P............RswdiggtV....A........I....YCF..QKLNTGVG..AT..--..QQ..VNVVITTKLNKDFVFSQIKP..P-.....-NIEDQINTA..FFPPNLlSTMDFSA.RT-----------...------------------...-------------iapagqvinklviqsvkdvqtnyndaf.....................................................................
CAPSD_FCVUR/108-395                    ........................................................................gev---AKA.WDPNLpLFRLEADD---GSITAPEQGT..VVGGV..IA.E......PSSQMS.TAA..DMASGKSV...DS..EWEAFFS.FH..TS.....VNWSTSETQ...GKIL........FKQS.LGP...........L....L.......N..............P..Y.........L.....EH.....LSKL..YVA.WSGSVEVRFSISGSGVFGGKLAAIVVP...P.....G....V..D....P...I...Q...S...T...S...M...LQY...P...H.VLFDAR.QV..E...PVIFTIPDL.........RS.T.......LY.H.....L...M...........S..........-....D........T......D.....T...T............S.......L....V........I....MVY..NDLINPYA..ND.sNS..SG..CIVTVETKPGSDFKFHLLKP..PG.....SMLTHGSVPS..DLIPKT.SSLWIGN.RFWSDITDFVIRP...FVFQ-ANRHFDFNQETAG...WSTPRFRPITVTI................................................................................................
A0A1L3KKS4_9VIRU/2292-2488             ...........gdsdmslltlaqrpslltkvqwsssknvgdklwnievtptpdrtifqtillrsqigsdkaiygy------.-----.---------------------..-----..--.-......------.---..--------...--..-------.--..--.....---------...----........----.---...........-....V.......V..............P..P.........I.....SM.....VAGL..MSE.WRGSIDFDFVVVGSQYHTGRLLCCFIP...Y.....V....R..E....D...L...T...L...E...Q...A...QAV...P...Y.VVFDIH.DE..R...AFTFTTPYI.........AD.KpwwpcgyLN.G.....Q...K...........D..........Q....P........K......G.....I...G............S.......L....F........L....LVL..NPLIPMDN..VA..NT..LD..IMVYIKANPS----------..--.....----------..------.-------.-------------...------------------...-------------fevai...........................................................................................
A0A1L3KLU5_9VIRU/6-240                 ..........................................................tnnapqptpsngqaaev------.-----.------FAGTDPAVLQPTISA..IGNVG..PS.S......AAGVLG.TAA..MPGLDQYI...RT..NWLTI--.--..GT.....FLWTVGLAA...GDLL........WSTR.IHP...........S....T.......H..............P..I.........L.....SY.....LSGI..HNT.FVGGLEFMVKVAGTGFHAGAIKMCRIP...Pn..rdP....K..E....F...I...T...T...T...E...T...DHF...E...W.GIIDPK.TL..E...VVCQELPDQ.........RR.M.......NY.H.....Y...L...........N..........D...iT........V......D.....G...F............G.......G....Y........F....AIY..VQIPLNTS..AS..GT..HQ..ISVNVWCRASPTFQLLQVVP..P-.....----------..------.-------.-------------...------------------...-------------prnpslqvnsws....................................................................................
A0A1L3KJB2_9VIRU/10-238                ............................................stsgpaeifdatiagtnetpvssdgnrgpnt------.-----.---------------------..-----..--.-......----TE.APT..HAGANNGI...DP..FFFKHFI.AL..RK.....ATWTVNQDP...ATLL........FSVP.IHP...........S...eC.......H..............Q..W.........M.....AH.....IGKM..YNV.WAGGIDFAVKVAGTGFHAGAIMCVRIP...P.....N....I..Q....P...K...TlrtE...S...D...I...TAF...E...Y.SVIDPK.TL..E...VISKSVMDQ.........RY.V.......MY.H.....Y...T...........N..........EfnleK........P......R.....T...F............G.......G....Y........F....CIY..VLMPLNTS..AT..GS..AE..ITVQIFSKPCSDFKFSQLKP..I-.....----------..------.-------.-------------...------------------...-------------slgpvielypp.....................................................................................
A0A1L3KHA6_9VIRU/1841-2131             ..............................................................hqtkmeqksaapp------.-----.--TASGGTGDGTTVASTDQAP..LPIST..IEaP......STTSAE.APA..HVGNVNIL...DP..YFYEQFI.PT..AT.....LTWTTAQLP...GTLL........WHAP.IHP...........S....R......aH..............N..I.........L.....AY.....LSRM..YNV.WIGGLDYQVKIAGTGFHAGAIAIVRLP...P.....N....I..H....P...T...S...LktpA...Q...F...GAY...R...Y.NILDPK.VL..Q...AVSTSIMDQ.........RP.L.......AY.H.....Y...M...........D..........Y....D........E......S.....N...P............Nti...ggW....V........A....MFV..LQSLNTSA..TG..-T..QQ..IDVQIFTKAAQDFGMLQIIP..PA.....I---------..------.-------.-------------...------------------...-------------dfslptidtfqaynalfynlelqtcplfakgisqlgiapadivssrqglaglaegwdl......................................
A0A1L3KJ66_9VIRU/163-332               .................................................................gdgpkesvqg------.-----.LATQESDKASNTIVTRDEAQT..TSETI..AE.D......KATAYA.SSE..RITTMEQL...TG..RWMPLKS.VE..VRt..dgQSRDTILASyylPETL........FTQMgSAP...........N....L.......L..............P..F.........E.....TF.....IYGK..Y--.---DIEMKFVVNANKFQCGKLVAALKW...Ds...yQ....A..D....E...I...Qt.gS...L...T...A...LQR...P...H.VMLDLA.--..-...---------.........--.-.......--.-.....-...-...........-..........-....-........-......-.....-...-............-.......-....-........-....---..--------..--..--..--..--------------------..--.....----------..------.-------.-------------...------------------...-------------tnvegvlrvpf.....................................................................................
A0A1L3KH48_9VIRU/4-251                 ................................kdaampptasgeitegmgvppempvdagidrpggitaevqqvh------.-----.---------------------..-----..--.-......------.---..-TSRNDSI...EA..FLRSVPI.LQ..KI.....IKWSVNDLP...GTIL........YQVP.VHP...........S....Y......vN..............Y..M.........V.....KW.....FKKA..FKY.WNGPIIFMIDLAGTGFHGGKLIIFHTP...P.....G....K..RfkpsK...M...T...M...A...Q...W...FTF...S...H.GLVDAK.SQ..G...NNLACAPDV.........IG.R.......TL.H.....D...N...........Gpfd....ennE....D........T......Y.....G...G............W.......F....G........I....GVV..MELKTSGT..GD..--..QE..IQFSLEACLAPSFSFNYIVP..TN.....L---------..------.-------.-------------...------------------...-------------leedeevltfdldpvpilsqf...........................................................................
A0A1B2RVM9_9VIRU/2-268                 ..................................................smddthitsvetaqeislpsnvdpp------.-----.---------------------..-----..--.-......EPSPRE.AII..HIGASNRL...DP..QIYQQNI.HR..TT.....LTWSTNDQP...GTLL........WWAA.LTP...........R...dI.......N..............P..I.........V.....SH.....MADC..YHV.WTGDAVYEVKIAGTSFHAGMLTVVELP...P.....N....V..H....P...N...D...L...A...G...T...RDY...SaynW.KGIDAK.NP..T...LEGFSVRDV.........RQ.T.......TF.H.....Y...V...........D..........D....E........Q......N.....I...G............N.......HhhggY........I....AIY..VDMALNTS..ST..GT..QQ..ISVQVWSKPAPNFRLLKLKI..P-.....-RLRSQV---..------.-------.-------------...------------------...-------------rssfleeymnymldftkgdelvsianlqrqasylvvmpkskvtfn...................................................
POLG_SVSAP/1729-2012                   ..................................................................pkqsnnpmv------.-----.-----VDPPGTTGPTTSHVVV..ANPEQ..PN.G......AAQRLElAVA..TGAIQSNV...PE..AIRNCFA.VF..RT.....FAWNDRMPT...GTFL........GSIS.LHP...........N....I.......N..............P..Y.........T.....AH.....LSGM..WAG.WGGSFEVRLSISGSGVFAGRIIASVIP...P.....G....V..D....P...S...S...I...R...D...P...GVL...P...H.AFVDAR.IT..E...PVSFMIPDV.........RA.V.......DY.H.....R...M...........D..........G....A........E......P.....T...C............S.......L....G........F....WVY..QPLLNPFS..TT..AV..ST..CWVSVETKPGGDFDFCLLRP..PG.....QQMENGVSPE..GLLPRR.LGYSRGN.RVGGLVVGMVLVA...EHKQ-VNRHFNSNSVTFG...WSTAPVNPM----aaei............................................................................................
A0A1L3KHA2_9VIRU/8-233                 ...........................................ataapvvdsaatpagplsletgrtthqplstv------.-----.---------------------..-----..--.-......------.---..-TGNFNSL...DP..FLYRHNF.II..AN.....FRWNADKAP...GNLI........WQLP.LSP...........Y...nL.......G..............G..R.........I.....AE.....RAAA..YLY.WRGQISFEVIVVATGFHAGQLFIVETP...P.....D....Y..K....P...G...StqsI...S...D...L...STF...H...H.EQVDVK.VG..V...PIQFSTRDI.........CP.T.......QF.H.....T...V...........F..........D....S........Q......S.....T...L............K.......-....-........-....---..--------..--..--..--..--------------------..--.....----------..------.-------.-------------...------------------...-------------ptesvtgmqsiggyismfnltkltaantapeisiivkacldpsfevsimrplsfdner......................................
A0A1L3KJC0_9VIRU/4-258                 .....................................................etkaeavpennpslaftnedvs------.-----.--------------------L.pTSHSA..FT.E......PGTSPS.TVArdIGCTGVRV...FP..ELYEKDY.QI..DS.....ITWDIGKSP...GTIL........KVFT.ISP...........D....M.......H..............P..Q.........I.....AY.....LMKM..FQF.WSGTIDIVFKIAGTGFNAGLIGITTAN...P.....L....V..P....L...E...T...YkntT...D...F...CNF...D...T.QYADPK.QL..A...LFKVTPQDF.........HI.Y.......NT.H.....I...N...........S..........I....N........QtatgdtD.....A...D............Kitk.asgL....Aa......kV....AVF..VSLQLASG..TS..GN..TS..VDIGVFLVASKSFRLHQ---..--.....----------..------.-------.-------------...------------------...-------------ilpapssitnnisfellnhaldvsn.......................................................................
A0A1L3KH69_9VIRU/333-536               ...........................................ctpmslsadnkicvitdatpaamdemsfkyin------.-----.---------------------..-----..--.-......------.---..--------...--..---SVWS.YH..SD.....FQWSTSRLI...GDVL........AVHS.ISP...........S....A.......MelsftlgarpvrtiP..A.........C.....AF.....MRRF..FRK.YRGGFDFKINIVKTGYHTGSLAFVYVP...Gk...tL....I..S....A...P...P...Y...A...T...T...SYL...Y...R.TIVDIQ.AC..D...EVILRVPFI.........LP.Q.......SY.I.....N...V...........D..........-....-........E......Q.....I...G............T.......L....L........I....YVV..NPLLAPAT..VA..--..ST..VDIMLQVRGSPDLQYQ----..--.....----------..------.-------.-------------...------------------...-------------vpdi............................................................................................
A0A1L3KHP1_9VIRU/4-218                 .........................raapatasegvtdqhpsesgyvpnamgnpaypaiptrtdeipervkalnm------.-----.---------------------..-----..--.-......------.---..-------L...DP..YFYSQFV.LL..NS.....FSWSNQDQK...NKIL........WSIE.LKP...........E....N......mH..............A..N.........L.....AY.....ITAM..YNA.WVGDFEFMLKIAGTGFHGGALGVAWIP...Pn...lN....V..E....D...L...S...G...A...E...L...TIF...D...Y.LLLDPK.MQ..D...LKGFAGKDV.........KN.V.......DF.H.....W...K...........D..........N....E........A......-.....-...-............-.......-....-........-....---..--------..--..--..--..--------------------..--.....----------..------.-------.-------------...------------------...-------------aaqfnsdfakvaskggylvmfvvlplitsttgnnainlai........................................................
A0A1L3KM37_9VIRU/30-258                ................................................................piptnevwhht------.-----.---------------------..-----..--.-......------.---..--GHKNVI...DP..QVYEQNI.FV..AT.....VEWSVNDEA...GKLL........WVSE.VNA...........Q....S.......N..............P..L.........T.....SF.....LSGM..YHY.YKGGFVYMIKVMGSAFHAGQVSLTVLP...P.....D....A..N....P...T...E...L...SgtrG...W...TAY...N...W.VAVDPK.HI..G...PIEVEVRDV.........NQ.G.......SF.H.....F...T...........D..........P....S........K......Q.....G...L............S......pLkrigW........I....AMF..VDSRLNTT..TS..GT..QQ..ISIEIWCKPTRDFMFSYLRI..P-.....---RPSETPS..VGIPAE.-------.-------------...------------------...-------------layllnfslqgngillansfvqtdk.......................................................................
A0A1L3KLV8_9VIRU/567-834               .......................lcrkwslvetiqwhtkheagvvlfdhfssprlfktnsnsktegngsktyypt------.-----.---------------------..-----..--.-......------.---..--------...--..-------.--..--.....---------...----........----.---...........-....-.......-..............-..I.........L.....DY.....LSRH..FAY.WSGELEVRLDVIANTFYTGRIALYVVP...-.....G....M..N....S...V...V...S...L..rN...A...SCS...S...G.QVFDLQ.EN..L...SFVFTIPFY.........AN.Tpa...wpVY.S.....E...M...........A..........H....Pn......fE......E.....L...A............P.......S....V........T....SLY..--VINRLV..TS..DNvpDS..VDINVYLRGSTNFEFLLLKT..PDisaylNQVVHRSSSSvaRIDPNW.A------.-------------...------------------...-------------saftsgsrwtdhggeeyccvfynettdyftqflnfnfekdgkkvyysipsdqeing........................................
A0A1L3KM48_9VIRU/4-233                 ...........................................................pgmsaapavsgdpais------.-----.------------ASTDAAQLP..LSTIS..TA.P......APAAE-.AIP..HTGSLNAL...DP..YVKEQFI.SQ..GS.....FEWTTADLV...GKLI........FSCP.IHP...........V....N......aN..............P..I.........L.....AY.....LSKI..YNT.WAGGLDFKAKIAGTGFHAGALALVRLP...P.....N....V..D....P...A...T...V...S...D...V...NKFtcfE...Y.EIIDPK.LL..E...CVSRSVMDQ.........RN.T.......MY.H.....Y...N...........P..........Y....D........A......T.....N...Yns.......fggN.......F....C........I....FVL..QALNTSSS..GS..--..TS..ISVQIFSKASEDFEMLQIIP..PN.....ITT-------..------.-------.-------------...------------------...-------------lsst............................................................................................
A0A1L3KHD3_9VIRU/396-605               ...........................................qkpsptgnfanvdasdavnrltldskqeitid------.-----.---------------------..-----..--.-......----SR.TVG..LDGGDQMA...FD..NIQTRES.YL..TS.....FTMSSTDAP...DAIL........WNSY.VTP...........NlfgiN.......N..............P..E.........LhmtpmAM.....LAQY..FSA.WQGTIKFRFQIVKSNFHKGRILVRY-D...P.....R....S..H....S...S...D...V...N...Y...T...TNY...S...R.V-----.--..-...---------.........--.-.......--.-.....-...-...........-..........-....-........-......-.....-...-............-.......-....-........-....---..--------..--..--..--..--------------------..--.....----------..------.-------.-------------...------------------...-------------idlateddfeieigwgqnvpflgnqqanvsrvyyggtrlttdsggnhngvievnvvnslvapaad...............................
A0A1B2RVQ1_9VIRU/1-254                 ..................................................................msstshipq------.--PAA.GATDEVFDSTSATAVQPTVSR..LGIPA..GP.P......QEIPIH.TGQ..VNTYDASI...HQ..QWV----.PT..DS.....ITWTVSQPS...GTLL........WFKP.IHP...........T...fS.......N..............A..L.........L.....AY.....LSRI..YNA.WGGALDYKFKIAGTGFHAGAIAIVRIP...Pn..rnP....S..E....F...T...T...P...Q...S...W...GAF...E...Y.MVIDPK.TL..E...TISVGISDQ.........RP.I.......AY.H.....YfpyN...........G..........E....N........P......L.....S...F............G.......G....W........I....AMY..VLIPLNTS..SS..GS..QT..ISIQSFCKPAEFFQYSQLIM..PS.....ENISADPFPS..------.-------.-------------...------------------...-------------efayafdfttakycat................................................................................
CAPSD_NVN68/2-294                      .........................................................................mm--ASKD.-----.-ATSSVDGASGAGQLVPEVNA..SDPLA..MD.P......VAGSST.AVA..TAGQVNPI...D-..PWIINNF.VQ..AP.....QGEFTISPNntpGDVL........FDLS.LGP...........H....L.......N..............P..F.........L.....LH.....LSQM..YNG.WVGNMRVRIMLAGNAFTAGKIIVSCIP...Pg...fG....S..H....N...L...T...I...A...Q...A...TLF...P...H.VIADVR.TL..D...PIEVPLEDV.........RN.V.......LF.H.....N...N...........D..........R....N........Q......Q.....T...M............R.......L....V........C....MLY..TPLRTGGG..TG..DS..FV..VAGRVMTCPSPDFNFLFLVP..P-.....-TVEQKTRP-..FTLPNL.PLSSLSNsRAPLPISSMGISPdnvQSVQFQNGRCTLDGRLVGttpVSLSHVAKIRGT-s...............................................................................................
POLG_BECN1/1662-1941                   .......................................................msdnkstpeqqhessramda------.-----.------------GATGAAAAA.pAPPVA..AA.P......ASGLVG.ALV..AEPQSGPS...AE..QWRTAYT.LF..GT.....VSWNANAGP...GTIL........TVGR.LGP...........G....M.......N..............P..Y.........T.....QH.....IAAM..YGG.WAGGMDIRITIAGSGFIGGTLAVAAIP...P.....G....V..D....P...-...E...S...V...N...V...LRM...P...H.VLIDAR.GG..V...PLEVTLEDI.........RT.S.......LY.H.....P...M...........G..........-....D........T......N.....T...A............S.......L....V........I....AVM..TGLINPLG..TD..-T..LS..VTVQLETRPGRDWVFFSLLP..PT.....AGV-ASADPS..QLLTRV.ALATSPEvRFGTGVLGILGLP...SNPS-VNRVYDVQSRTRG...WSFP---------ipss............................................................................................
A0A1L3KHK3_9VIRU/6-235                 ........................................................tatgtpknydvsaqgggpa------.-----.--------------------A..LDTQQ..VP.V......EASQTA.IVA..HSGDVNVI...DP..YLKKHFI.LN..SI.....FRWTTAMPA...GTII........RKIP.VHP...........S...yA.......N..............P..Q.........V.....QH.....LSQM..YNL.WAGSLDYKIEIAGTGFHGGRLLVAKVP...P.....N....L..N....Pd.dY...T...P...Q...G...L...TVF...H...N.VEIEVK.QS..M...GGTLTAIDQ.........KN.I.......VY.H.....Y...N...........S..........G....S........KpelgsvD.....G...G............T.......L....V........I....IVL..YPLVLAAE..Q-..-N..GS..VNLGLYSKLGDDFVFSQMQP..V-.....----------..------.-------.-------------...------------------...-------------lqtttynpthln....................................................................................
I6YQK4_PASI1/366-501                   ......................................................................gnlgp------.-----.---------------------..-----..--.-......------.---..--------...--..-------.--..--.....---------...----........----.---...........-....-.......-..............-..-.........-.....--.....LSTA..YQF.WRGSIIFTLTIFASSFHRGRLRIVLFP...N.....G....T..H....S...F...S...Q...D...D...A...NAL...I...F.TVCDIG.EQ..S...SFDITLPFT.........HY.N.......WI.R.....E...C...........D..........-....N........-......S.....V...V............V.......L....-........V....NVY..VETRLAHN..NA..SS..NV..IKCALFVRGGEDFEFL----..--.....----------..------.-------.-------------...------------------...-------------apcgdtvkfhgwgs..................................................................................
A0A1L3KM75_9VIRU/2-295                 .............................................stqtasavsmgdevfsstedaplpvsaiqa------.-----.---------------------..-----..--.E......HADPGE.AVP..HVGAANTI...DP..FFYEQFV.AQ..TN.....FTWTSSDNP...GKLL........YTIP.IHP...........V...fA.......N..............I..Y.........L.....AY.....LVQL..YNT.WVGGLDFKVKVAGTGFHAGALILARIP...P.....N....I..D....PnslT...T...T...S...A...I...TAF...P...C.TFIDPK.TL..T...AASQSIMDQ.........RQ.L.......MY.H.....Y...T...........N..........Y....D.......sA......D.....S...Tti........ggH.......F....A........I....YVL..QSLNTSAS..G-..-T..NQ..IDVQVFCKASADFELLQIKP..PN.....LTLN------..------.-------.-------------...------------------...-------------pptptyanftklfdrlagqttpyafgsnciefivapttgpiyaglegarqldgsllgtyttfdeqvta............................
#=GC seq_cons                          ..................................................................sstttthss.................................................................hss..p.l...c....hhpp.h.h...ss.....hsWosspss...GslL........aph..lpP...........p....h.......s..............s..h.........l.....sa.....luph..Yst.WsGulcaclplsGTuFHuGpLhhshlP...P.....s....h..c....s...h...s...h...s...p...h...sta...s...a.hhlDs+.ph..p...shshsl.D..........+t.h.......ha.H.....h...h...........s...............s........t......s.....s...h............s.......h....s........h....hlh....l.hsss..ss......tp..lpl.l.s+su.sFph..hh........................................................................................s..............................................................................................
//