#=GF ID Cdc13_OB4_dimer
#=GF AC PF18233.5
#=GF DE Cdc13 OB4 dimerization domain
#=GF AU Smart A;0000-0002-6965-5633
#=GF SE ECOD:EUF04951
#=GF GA 25.00 25.00;
#=GF TC 26.20 26.00;
#=GF NC 24.30 24.70;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch --cpu 4 -Z 75585367 -E 1000 HMM pfamseq
#=GF TP Domain
#=GF CL CL0021
#=GF RN [1]
#=GF RM 22025677
#=GF RT Analyses of Candida Cdc13 orthologues revealed a novel OB fold
#=GF RT dimer arrangement, dimerization-assisted DNA binding, and
#=GF RT substantial structural differences between Cdc13 and RPA70.
#=GF RA Yu EY, Sun J, Lei M, Lue NF;
#=GF RL Mol Cell Biol. 2012;32:186-198.
#=GF DR INTERPRO; IPR041028;
#=GF DR SO; 0000417; polypeptide_domain;
#=GF CC This domain is found in Cdc13 proteins in several Candida
#=GF CC species. The Cdc13-Stn1-Ten1 complex is crucial for telomere
#=GF CC protection. This domain is the C-terminal OB4 domain and is
#=GF CC responsible for dimerization. Dimerization of Cdc13 is important
#=GF CC for high-affinity DNA binding [1].
#=GF SQ 22
#=GS G0VEZ4_NAUCC/738-824 AC G0VEZ4.1
#=GS A0A1S7HND7_9SACH/540-651 AC A0A1S7HND7.1
#=GS A7TIB2_VANPO/672-785 AC A7TIB2.1
#=GS CDC13_YEAST/747-871 AC P32797.2
#=GS A0A1X7R6V4_9SACH/706-824 AC A0A1X7R6V4.1
#=GS A0A7H9HQE6_9SACH/628-750 AC A0A7H9HQE6.1
#=GS A0A4C2EC47_9SACH/638-754 AC A0A4C2EC47.1
#=GS Q6CJ70_KLULA/771-888 AC Q6CJ70.1
#=GS Q75E25_ASHGO/736-849 AC Q75E25.1
#=GS G8ZLD5_TORDC/633-741 AC G8ZLD5.1
#=GS A0A0C7N398_9SACH/776-893 AC A0A0C7N398.1
#=GS A0A7H9B923_ZYGMR/634-756 AC A0A7H9B923.1
#=GS A0A1G4JCG8_9SACH/764-881 AC A0A1G4JCG8.1
#=GS A0A376BB18_9ASCO/851-973 AC A0A376BB18.1
#=GS Q6FT40_CANGA/623-734 AC Q6FT40.1
#=GS H2AW79_KAZAF/660-773 AC H2AW79.1
#=GS G8JUM9_ERECY/777-891 AC G8JUM9.1
#=GS A0A1S7HB58_9SACH/540-651 AC A0A1S7HB58.1
#=GS G0WFJ4_NAUDC/859-962 AC G0WFJ4.1
#=GS C5DD12_LACTC/788-910 AC C5DD12.1
#=GS A0A1G4K3Y4_9SACH/702-804 AC A0A1G4K3Y4.1
#=GS A0A1G4MJQ0_LACFM/819-934 AC A0A1G4MJQ0.1
G0VEZ4_NAUCC/738-824 .....................ln--VLQDDEP-VIFRV.SGKLINVEY.HPSY-L.ALTITN......DTFA..KDAI..EWTRILKIEVFSS..ENIRYFF..N...A......--...-.....--....-......-...----...-...-...------------....--...---.-....------------------gvepplvemstqsqvlstenain
A0A1S7HND7_9SACH/540-651 ................qelqaqt-----DLFSNVLYKL.DARILLIAR.SEDR-V.ELLVTN......DIIA..DRFV..DPKRILRIEILGH..ENLRHFT..A...-......--...-.....SW....R......D...GGQL...V...G...NECVFRLARGLI....GV...RSQ.I....GMLTWCPVECTFEELRI-k......................
A7TIB2_VANPO/672-785 ......................l-QSATDSENKNDYIL.RIKVLSVEN.DKEL-I.RLIVTD......DLDE..QEFI..NPNNILNIDILNQtlDTINESL..N..fM......ES...I.....NN....I......R...LRKL...I...D...KTIELQITKLKI....KD...S--.-....KLLLWTPANHSLKKILSQ.......................
CDC13_YEAST/747-871 ...................rpqq-----THKSNTLYSC.EGRIIAIEY.HASD-L.CFHITN......ELPLlqTRGL..APERVLQLHIITS..KNFAYFF..N..rS......SA...YlqrqpLE....E......K...YTQLaqfL...G...HSFKFNITSSLT....LF...PDT.T...vALQIWCPIECTFRELQQQ.......................
A0A1X7R6V4_9SACH/706-824 ...............lyktqtnm---------NNLFIVdNLKLLSWKL.IENQKVlILNVTN......DLVS..SERI..EQTRILPLYIIND..SNLKYFC..NgcfN......AH...S.....LT....T......D...LNKM...I...G...QKFSFKIKTGRL....KL...NDK.Y....LLKIYCPIECTLAELISQ.......................
A0A7H9HQE6_9SACH/628-750 .......................LNQIQHESR-TLYRV.EGQVLALHHgDNDTFL.EILITN......DFLS..TNYA..DPSRILRIAIPAG..DSLRFFF..S...A......RE...N.....LP....Q......HiqlLHNL...V...L..gEELCFRILRRAI....RI...TNF.QdkiaMTMIWCPVECTLQELRSQ.......................
A0A4C2EC47_9SACH/638-754 avsakilsfftedssfnhwtllv---------------.-------TI.ENSDAQ.KNVISD......D---..DRFV..DPRNILRIEIFGK..ENLEYFT..A..rR......LS...S.....TI....G......I...LQHL...D...RsrgKTCKLRLKRGYI....TL...RSS.V....VLLVWCPIELTLEELNV-n......................
Q6CJ70_KLULA/771-888 ............knnvqmdhkdi-------------KV.TAKILSIF-.DNGNNV.TIYLTR......SGMVgtQCTIenPFEELLKVQIWGR..QNLTLFF..G...N......PN...Ys...yKR....E......E...LTAC...I...G...SIVDFTLIPRVL....RV...NEY.L....YIKIWCPIYATLESL---lih....................
Q75E25_ASHGO/736-849 .......................LQSNPLSSEGVLYLL.KGKILSTVV.DSSK-A.TIYITN......DAKL..QEEV..SVRGFLRLQILGE..ANVSYFC..G...A......DE...A.....ST....D......V...LQAL...N...L...RAFKFYLLPGEV....QI...SPS.K....TARVWCPVECSIEELNSQ.......................
G8ZLD5_TORDC/633-741 ...............qapengts----------SVHRV.EGQLLLLQL.KNGS-V.QLHVTN......ELIT..GNYV..VPARILTLELPTS..QAVQSFD..Q..dC......SD...V.....LG....E......E...FC-F...T...V...TRRNLPLLE---....-L...NPTgK....RLLVWCPIECSLPELRSQ.......................
A0A0C7N398_9SACH/776-893 ..............ndddendvl----------AVFEV.HAKVVHVLQ.APEC-L.VFHLTN......DYLT..QDML..DSHRLLRVEIPGA..HNIANFY..Gg.aQ......TR...A.....SE....N......E...LSGL...VaggD...QRLTFRLSPFKA....PV...SSS.R....NVRIWCPIECSIYELQ--ae.....................
A0A7H9B923_ZYGMR/634-756 ................llnqstd--------LNILHEV.EGQVISINY.DQTR-L.EILITN......SIFQ..KDFI..DPERVARIEIFGA..QNLNYFFnnGrteV......DQ...Q.....SI....D......A...LKEI..aV...G...EELKFKIVRGIIplytKR...GQQ.S....GLMFWSPIELTMLEIKSQ.......................
A0A1G4JCG8_9SACH/764-881 .....................lp--SLRKLNSSVIFEI.KAKVAA-IF.HSTKVL.VFVLSD......DHAS..QDML..DPKRLLRIEIPGA..DNVANFY..G...S......RD...A.....RMvsekT......M...EKDL...V...G...QILTFRLCAFNI....PV...SPY.Q....DLRIWCPLECTIQELNA-e......................
A0A376BB18_9ASCO/851-973 .......................LNRYTYIDEKTCFKV.TGKFVSYNK.DRNVSL.KFHMIDsnygrdEGKK.dNTLI..DPKNMLSVEIWGE..DNLKYFF..E...-......-G...C.....RI....T......S...LDNL...L...G...KEVSIYVVRTQI....SV...GSH.Dh.paNILIWAPVKQTLREL---lms....................
Q6FT40_CANGA/623-734 .......................LNHLQHLTP-KIYVL.NVYIIDVEI.VYDQEI.RIKVVN......ELPM.vGKYV..PPVDILEVYITGK..EEVQNFL..G...D......EA...L.....TM....D......I...FTPL...L...N...ETSRLRVFQ---....RP...SKT.D....RIIRWSPIECTIQELRLQ.......................
H2AW79_KAZAF/660-773 .......................LNMIRNADDMTLFNI.TAKLIEYDI.DDEDFV.NLYVTD......DLIS..KKTI..DPNRILKIQIFGR..DNINYFK..G...-......NN...Q.....LG....I......I...GREL...V...D...CQLNFKIVRSMV....KL...NEY.T....SIVSWCPIECTLEELKYQ.......................
G8JUM9_ERECY/777-891 .......................FNSTEIYASGNLYLI.KAKILSATV.DGSK-V.TMYLTD......DAPL..RNKM..NPNEVLKVEILGK..SNMNYFC..G..dS......GK...T.....LE....E......E...LEAL...I...L...KTFNFFLLPAKI....KL...SPT.T....SLLTWCPAECSLDDLKSQ.......................
A0A1S7HB58_9SACH/540-651 ................qelqtqt-----DLFSNALYKL.DARILLIAR.SEDR-V.ELLVTN......DIIA..DRFV..DPKRILRIEILGH..ENLRHFT..A...-......--...-.....SW....R......D...GRQL...V...G...NECVFRLARGLI....GV...RSQ.I....GMLTWCPVECTFEELRI-k......................
G0WFJ4_NAUDC/859-962 ........itylcllitvrdhne---------------.---------.------.------......--EL..ETMI..ENRKLLRIEMFKE..ETINYFL..N...KsaynnyDNtvdV.....SL....D......R...LQNF...V...G...ETFQFMVTKAPF....QLqlrSRS.I....NLLVWCPVEFTMEEMKSQ.......................
C5DD12_LACTC/788-910 ..................lygld-----ATDSSHLFEL.RAKVVAA-I.RTGELL.AFYVTN......DWIS..QDML..DPTRVLRVEIPGR..SNMDYFF..GtyaS......QE...T.....RP....DlaardaQ...LGTM...I...G...ETFTFRLVTFAV....PV...SPS.R....FLRTWCPVECTIQELSY-e......................
A0A1G4K3Y4_9SACH/702-804 ............lnqlqaemqaa--------LPAIYDT.TAKIVAIHA.TKET-L.VFHLTN......DLLS..CDLL..DPARTLKVAIRGK..DKVENFL..A...-......-N...T.....TS....A......K...LDQL...Q...N...KVVQCQ------....--...---.-....------------------lttwlepvtcshrllvnw.....
A0A1G4MJQ0_LACFM/819-934 .......................LHMIGKAAPHVLYDV.RGKVVAMSL.KGRQ-L.AIHITN......DCIS..QDLL..DPSRILRIDIIGP..ENLSYFF..Sv.rD......YH...A.....KY....N......E...FDSF...I...G...HEFSFKLSRTAV....SI...NTS.A....KLLTWTPIECTLEEMRSQ.......................
#=GC seq_cons .................................slapl.pu+llshph.cpsp.l.phhlTN......Dhht..pchl..-PpRlL+l-IhGp..cNlpaFh..u...t......tp...h.....ph....p......p...hppL...l...s...pphpFplhpthl....tl...ssp.h....tlhhWCPlECTlpELp.........................
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