GenomeNet

Database: Pfam
Entry: Collagen
LinkDB: Collagen
Original site: Collagen 
#=GF ID   Collagen
#=GF AC   PF01391.18
#=GF DE   Collagen triple helix repeat (20 copies)
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF AU   Eddy SR;0000-0001-6676-4706
#=GF SE   Swissprot
#=GF GA   27.20 27.20;
#=GF TC   27.20 27.20;
#=GF NC   27.10 27.10;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 45638612 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Repeat
#=GF WK   Collagen_helix
#=GF RN   [1]
#=GF RM   8240831
#=GF RT   New members of the collagen superfamily 
#=GF RA   Mayne R, Brewton RG; 
#=GF RL   Curr Opin Cell Biol 1993;5:883-890.
#=GF RN   [2]
#=GF RM   11158359
#=GF RT   Streptococcus pyogenes sclB encodes a putative hypervariable
#=GF RT   surface protein with a collagen-like repetitive structure.
#=GF RA   Whatmore AM;
#=GF RL   Microbiology. 2001;147:419-429.
#=GF RN   [3]
#=GF RM   21726633
#=GF RT   Characterisation of a large family of polymorphic collagen-like
#=GF RT   proteins in the endospore-forming bacterium Pasteuria ramosa.
#=GF RA   McElroy K, Mouton L, Du Pasquier L, Qi W, Ebert D;
#=GF RL   Res Microbiol. 2011;162:701-714.
#=GF DR   INTERPRO; IPR008160;
#=GF DR   MIM; 240400;
#=GF DC   Scurvy is associated with collagens.
#=GF DR   SCOP; 1a9a; fa;
#=GF DR   SO; 0001068; polypeptide_repeat;
#=GF CC   Members of this family belong to the collagen superfamily [1].
#=GF CC   Collagens are generally extracellular structural proteins
#=GF CC   involved in formation of connective tissue structure. The
#=GF CC   alignment contains 20 copies of the G-X-Y repeat that forms a
#=GF CC   triple helix.  The first position of the repeat is glycine, the
#=GF CC   second and third positions can be any residue but are frequently
#=GF CC   proline and hydroxy-proline.  Collagens are post translationally
#=GF CC   modified by proline hydroxylase to form the hydroxy-proline
#=GF CC   residues. Defective hydroxylation is the cause of scurvy. Some
#=GF CC   members of the collagen superfamily are not involved in
#=GF CC   connective tissue structure but share the same triple helical
#=GF CC   structure. The family includes bacterial collagen-like
#=GF CC   triple-helix repeat proteins [2,3].
#=GF SQ   75116
#=GS A0A1S3KDJ2_LINUN/702-763    AC A0A1S3KDJ2.1
#=GS A0A0N5B6Z5_STREA/183-246    AC A0A0N5B6Z5.1
#=GS A0A182E1W6_ONCOC/191-251    AC A0A182E1W6.1
#=GS A0A074ZV80_9TREM/777-844    AC A0A074ZV80.1
#=GS A0A093RTT8_9PASS/833-895    AC A0A093RTT8.1
#=GS COL14_CAEEL/264-333         AC P18834.2
#=GS CO4A4_MOUSE/54-113          AC Q9QZR9.1
#=GS G3TS62_LOXAF/599-647        AC G3TS62.1
#=GS G1PGP5_MYOLU/1298-1355      AC G1PGP5.1
#=GS W5Q9X9_SHEEP/1128-1189      AC W5Q9X9.1
#=GS G1QSI7_NOMLE/443-500        AC G1QSI7.2
#=GS A0A183T320_SCHSO/110-161    AC A0A183T320.1
#=GS A0A131MCG3_CAEEL/569-639    AC A0A131MCG3.1
#=GS A0A1S3FE03_DIPOR/258-317    AC A0A1S3FE03.1
#=GS A0A091KJL2_9GRUI/467-546    AC A0A091KJL2.1
#=GS T1G104_HELRO/1-56           AC T1G104.1
#=GS A0A1I8GLT3_9PLAT/719-790    AC A0A1I8GLT3.1
#=GS H3BWB8_TETNG/27-85          AC H3BWB8.1
#=GS A0A1L8HZW7_XENLA/322-383    AC A0A1L8HZW7.1
#=GS E7G7H1_9FIRM/1-60           AC E7G7H1.1
#=GS A0A1S3A477_ERIEU/738-820    AC A0A1S3A477.1
#=GS A0A131ZWW9_SARSC/308-366    AC A0A131ZWW9.1
#=GS A0A0V0S713_9BILA/41-98      AC A0A0V0S713.1
#=GS A0A2I0MA52_COLLI/78-141     AC A0A2I0MA52.1
#=GS G1RCL9_NOMLE/1060-1122      AC G1RCL9.3
#=GS CO4A5_HUMAN/283-352         AC P29400.2
#=GS A0A0Q9WHU5_DROVI/522-582    AC A0A0Q9WHU5.1
#=GS H2NAP1_PONAB/463-523        AC H2NAP1.1
#=GS D3ZCS2_RAT/46-105           AC D3ZCS2.1
#=GS G3VKV6_SARHA/73-140         AC G3VKV6.1
#=GS H2VDE5_TAKRU/997-1060       AC H2VDE5.1
#=GS A0A1A6GYA2_NEOLE/109-170    AC A0A1A6GYA2.1
#=GS A0A286ZHY0_PIG/586-655      AC A0A286ZHY0.1
#=GS Q9ZXF4_BPPH1/55-117         AC Q9ZXF4.1
#=GS A0A0N9QJ10_CEV01/17-77      AC A0A0N9QJ10.1
#=GS A0A1S3FXL7_DIPOR/1303-1363  AC A0A1S3FXL7.1
#=GS A0A1S3K3L1_LINUN/591-656    AC A0A1S3K3L1.1
#=GS A0A091KSN6_9GRUI/695-742    AC A0A091KSN6.1
#=GS A0A1U8CEC6_MESAU/1012-1073  AC A0A1U8CEC6.1
#=GS A0A182TSQ5_9DIPT/1026-1089  AC A0A182TSQ5.1
#=GS J9F8G1_WUCBA/236-292        AC J9F8G1.1
#=GS G7Y6J5_CLOSI/976-1036       AC G7Y6J5.1
#=GS W5NAM6_LEPOC/1385-1443      AC W5NAM6.1
#=GS A0A0Q3TS38_AMAAE/34-114     AC A0A0Q3TS38.1
#=GS U3INF9_ANAPL/24-86          AC U3INF9.1
#=GS H2UEQ9_TAKRU/882-940        AC H2UEQ9.1
#=GS A0A091GPS6_BUCRH/25-82      AC A0A091GPS6.1
#=GS A0A161SSL8_9MICO/403-463    AC A0A161SSL8.1
#=GS A0A1M5WXD0_9BACT/125-184    AC A0A1M5WXD0.1
#=GS A0A087X1E1_HUMAN/287-344    AC A0A087X1E1.1
#=GS J9NV06_CANLF/726-777        AC J9NV06.1
#=GS A0A2G9RIJ1_LITCT/16-78      AC A0A2G9RIJ1.1
#=GS A0A0C1U1X2_9CLOT/208-265    AC A0A0C1U1X2.1
#=GS W5JBH7_ANODA/1435-1486      AC W5JBH7.1
#=GS G3WIR0_SARHA/902-962        AC G3WIR0.1
#=GS A0A2I4B865_9TELE/358-411    AC A0A2I4B865.1
#=GS W5L8R7_ASTMX/646-705        AC W5L8R7.1
#=GS A0A0M3JBD0_ANISI/40-91      AC A0A0M3JBD0.1
#=GS A0A091L449_9GRUI/1-61       AC A0A091L449.1
#=GS A0A226MU91_CALSU/239-299    AC A0A226MU91.1
#=GS A0A151NYN3_ALLMI/545-605    AC A0A151NYN3.1
#=GS G7PCY8_MACFA/580-645        AC G7PCY8.1
#=GS H3C0B3_TETNG/311-379        AC H3C0B3.1
#=GS A0A2K5IXU8_COLAP/392-449    AC A0A2K5IXU8.1
#=GS G3W723_SARHA/1024-1088      AC G3W723.1
#=GS H2RYE7_TAKRU/760-826        AC H2RYE7.1
#=GS A0A2B4R7Q3_STYPI/623-681    AC A0A2B4R7Q3.1
#=GS A0A1L8GHR0_XENLA/1150-1210  AC A0A1L8GHR0.1
#=GS A0A151J6G7_9HYME/272-343    AC A0A151J6G7.1
#=GS H2UVH9_TAKRU/351-417        AC H2UVH9.1
#=GS T1EIY0_HELRO/1-52           AC T1EIY0.1
#=GS A0A1S3JBV5_LINUN/769-828    AC A0A1S3JBV5.1
#=GS W5MRH7_LEPOC/800-871        AC W5MRH7.1
#=GS A0A087Y721_POEFO/2-61       AC A0A087Y721.1
#=GS I3LWR7_ICTTR/304-356        AC I3LWR7.2
#=GS A0A0R3U6L5_9CEST/1186-1247  AC A0A0R3U6L5.2
#=GS H2TV73_TAKRU/1276-1338      AC H2TV73.1
#=GS A0A0R3RQG4_9BILA/355-422    AC A0A0R3RQG4.1
#=GS A0A1G4FL85_9FIRM/83-145     AC A0A1G4FL85.1
#=GS A0A2K5IP37_COLAP/806-875    AC A0A2K5IP37.1
#=GS B8IIN3_METNO/361-405        AC B8IIN3.1
#=GS A0A182EZJ4_ONCOC/3-81       AC A0A182EZJ4.1
#=GS A0A1G7WXT5_CHIFI/270-333    AC A0A1G7WXT5.1
#=GS A0A0N4YKE3_NIPBR/1-53       AC A0A0N4YKE3.1
#=GS A0A0P7XX83_9TELE/109-166    AC A0A0P7XX83.1
#=GS A0A0A0A0I3_CHAVO/1291-1363  AC A0A0A0A0I3.1
#=GS A0A0B1TCQ9_OESDE/139-201    AC A0A0B1TCQ9.1
#=GS A0A091FKE6_9AVES/36-94      AC A0A091FKE6.1
#=GS A0A183DWG1_9BILA/891-957    AC A0A183DWG1.1
#=GS A0A0N4W732_HAEPC/170-240    AC A0A0N4W732.1
#=GS A0A2I3GQC7_NOMLE/183-245    AC A0A2I3GQC7.1
#=GS G3WFY1_SARHA/785-848        AC G3WFY1.1
#=GS A0A1S3SX13_SALSA/927-987    AC A0A1S3SX13.1
#=GS A0A195F0A5_9HYME/1547-1625  AC A0A195F0A5.1
#=GS A0A1V4JHV1_PATFA/349-416    AC A0A1V4JHV1.1
#=GS H2SN09_TAKRU/1066-1134      AC H2SN09.1
#=GS F7BM28_XENTR/486-549        AC F7BM28.1
#=GS H2P8T0_PONAB/474-535        AC H2P8T0.1
#=GS A0A091V6H3_NIPNI/233-290    AC A0A091V6H3.1
#=GS A0A2I4CEW4_9TELE/604-662    AC A0A2I4CEW4.1
#=GS G3NNJ9_GASAC/159-222        AC G3NNJ9.1
#=GS CO1A1_MOUSE/285-344         AC P11087.4
#=GS A0A1S3W452_ERIEU/288-349    AC A0A1S3W452.1
#=GS A0A091J8Z9_EGRGA/494-556    AC A0A091J8Z9.1
#=GS H0ZEN6_TAEGU/373-451        AC H0ZEN6.1
#=GS H3E9M6_PRIPA/101-169        AC H3E9M6.1
#=GS A0A016UBG6_9BILA/80-143     AC A0A016UBG6.1
#=GS A0A0N4U7B8_DRAME/213-281    AC A0A0N4U7B8.1
#=GS A0A023ZTR7_9CAUD/99-158     AC A0A023ZTR7.1
#=GS A0A093F4F3_TYTAL/704-759    AC A0A093F4F3.1
#=GS A0A1S3N321_SALSA/447-509    AC A0A1S3N321.1
#=GS A0A195DSW5_9HYME/1118-1181  AC A0A195DSW5.1
#=GS A0A2I3GRZ3_NOMLE/1090-1150  AC A0A2I3GRZ3.1
#=GS W5P983_SHEEP/777-840        AC W5P983.1
#=GS H3AQS0_LATCH/851-919        AC H3AQS0.1
#=GS F7HA87_MACMU/773-831        AC F7HA87.2
#=GS A0A091ED69_CORBR/1433-1486  AC A0A091ED69.1
#=GS K0B3M8_CLOA9/446-516        AC K0B3M8.1
#=GS H3C0W7_TETNG/604-669        AC H3C0W7.1
#=GS G3W8G5_SARHA/178-229        AC G3W8G5.1
#=GS A0A183QIF8_9TREM/538-605    AC A0A183QIF8.1
#=GS A0A1W4WRM6_AGRPL/622-689    AC A0A1W4WRM6.1
#=GS A0A0D8XMT2_DICVI/221-285    AC A0A0D8XMT2.1
#=GS A0A2K5MC07_CERAT/699-749    AC A0A2K5MC07.1
#=GS E9H7I8_DAPPU/48-108         AC E9H7I8.1
#=GS E9Q5L6_MOUSE/233-297        AC E9Q5L6.1
#=GS F1QVG7_DANRE/1072-1132      AC F1QVG7.1
#=GS V4A4G2_LOTGI/84-184         AC V4A4G2.1
#=GS F2GDD7_HAEPS/614-674        AC F2GDD7.1
#=GS A0A1D5R904_MACMU/377-433    AC A0A1D5R904.1
#=GS H0Y9H0_HUMAN/34-111         AC H0Y9H0.1
#=GS A0A0L7QZY7_9HYME/406-450    AC A0A0L7QZY7.1
#=GS A0A2G8LJH9_STIJA/178-238    AC A0A2G8LJH9.1
#=GS A0A1L8GPQ2_XENLA/1767-1830  AC A0A1L8GPQ2.1
#=GS F7FD73_MONDO/836-895        AC F7FD73.1
#=GS F6R3X3_ORNAN/220-276        AC F6R3X3.1
#=GS A0A093EGS0_9AVES/439-508    AC A0A093EGS0.1
#=GS T1ID48_RHOPR/456-520        AC T1ID48.1
#=GS A0A094LCN5_9AVES/1-49       AC A0A094LCN5.1
#=GS W2SU41_NECAM/207-276        AC W2SU41.1
#=GS G1NZ08_MYOLU/1-48           AC G1NZ08.1
#=GS A0A2G5VA37_9PELO/219-287    AC A0A2G5VA37.1
#=GS A0A091DVA8_FUKDA/876-935    AC A0A091DVA8.1
#=GS COGA1_HUMAN/571-635         AC Q07092.2
#=GS A0A087XW20_POEFO/994-1068   AC A0A087XW20.1
#=GS A0A016UHV3_9BILA/146-212    AC A0A016UHV3.1
#=GS K1Q335_CRAGI/63-129         AC K1Q335.1
#=GS I3KA93_ORENI/161-219        AC I3KA93.1
#=GS A0A2I0MTP6_COLLI/2166-2219  AC A0A2I0MTP6.1
#=GS A0A1D5Q936_MACMU/123-200    AC A0A1D5Q936.1
#=GS A0A091P2X6_HALAL/1419-1470  AC A0A091P2X6.1
#=GS A0A0M3JVC2_ANISI/143-213    AC A0A0M3JVC2.1
#=GS A0A2K5I8P2_COLAP/1332-1396  AC A0A2K5I8P2.1
#=GS K7FM73_PELSI/620-679        AC K7FM73.1
#=GS A0A1M5Q7Y8_9BACI/13-69      AC A0A1M5Q7Y8.1
#=GS G3SUJ6_LOXAF/435-498        AC G3SUJ6.1
#=GS A0A183SGD2_SCHSO/1730-1791  AC A0A183SGD2.1
#=GS A0A212ELT1_DANPL/276-338    AC A0A212ELT1.1
#=GS A0A090LRT5_STRRB/132-193    AC A0A090LRT5.1
#=GS M3WLE0_FELCA/356-422        AC M3WLE0.2
#=GS A0A1I8BQG3_MELHA/102-171    AC A0A1I8BQG3.1
#=GS G7Q3F6_MACFA/142-200        AC G7Q3F6.1
#=GS A0A0C2HBK1_9BILA/748-804    AC A0A0C2HBK1.1
#=GS A0A1S3WKS9_ERIEU/1422-1480  AC A0A1S3WKS9.1
#=GS A0A0D9R541_CHLSB/779-839    AC A0A0D9R541.1
#=GS L1ITY7_GUITH/1-56           AC L1ITY7.1
#=GS J9NY38_CANLF/115-167        AC J9NY38.1
#=GS J9P717_CANLF/102-154        AC J9P717.1
#=GS A0A212F0E5_DANPL/115-168    AC A0A212F0E5.1
#=GS A0A151NAK6_ALLMI/142-199    AC A0A151NAK6.1
#=GS A0A0N4VLM2_ENTVE/1-80       AC A0A0N4VLM2.1
#=GS A0A1I6M1G5_9BACT/514-561    AC A0A1I6M1G5.1
#=GS A0A226PYH3_COLVI/201-267    AC A0A226PYH3.1
#=GS A0A154PGE1_9HYME/223-281    AC A0A154PGE1.1
#=GS A0A2G5UTP5_9PELO/137-199    AC A0A2G5UTP5.1
#=GS A0A2K5N4H7_CERAT/655-701    AC A0A2K5N4H7.1
#=GS H3DK71_TETNG/79-143         AC H3DK71.1
#=GS E1ZZ11_CAMFO/722-801        AC E1ZZ11.1
#=GS A0A1W4UGY8_DROFC/324-388    AC A0A1W4UGY8.1
#=GS A0A1D8GEK9_9CLOT/175-236    AC A0A1D8GEK9.1
#=GS A0A1I7TZH0_9PELO/1190-1249  AC A0A1I7TZH0.1
#=GS A8XR65_CAEBR/203-271        AC A8XR65.1
#=GS F6RTH9_HORSE/122-198        AC F6RTH9.1
#=GS A0A194RCY7_PAPMA/551-610    AC A0A194RCY7.1
#=GS A0A183F9E7_HELBK/41-104     AC A0A183F9E7.1
#=GS A0A142ESJ2_9BACT/1113-1183  AC A0A142ESJ2.1
#=GS B4JAS0_DROGR/1480-1541      AC B4JAS0.1
#=GS H3AEE8_LATCH/85-149         AC H3AEE8.1
#=GS A0A261C0J9_9PELO/101-153    AC A0A261C0J9.1
#=GS A0A1I8PJA6_STOCA/314-372    AC A0A1I8PJA6.1
#=GS A0A1W4UGE0_DROFC/459-519    AC A0A1W4UGE0.1
#=GS A0A0C2BTN8_9BILA/216-283    AC A0A0C2BTN8.1
#=GS H2S5Z5_TAKRU/493-555        AC H2S5Z5.1
#=GS W0BFJ1_9GAMM/45-120         AC W0BFJ1.1
#=GS A0A087RDJ3_APTFO/52-115     AC A0A087RDJ3.1
#=GS A0A091R0A0_9GRUI/551-611    AC A0A091R0A0.1
#=GS A0A1M5KPQ4_9GAMM/122-179    AC A0A1M5KPQ4.1
#=GS A0A183E9R4_9BILA/130-191    AC A0A183E9R4.1
#=GS W5MZF4_LEPOC/206-265        AC W5MZF4.1
#=GS A0A0T6AZP4_9SCAR/1-53       AC A0A0T6AZP4.1
#=GS G3N9W9_GASAC/2035-2096      AC G3N9W9.1
#=GS A0A158PTB5_BRUMA/223-284    AC A0A158PTB5.1
#=GS A0A084WQP3_ANOSI/440-503    AC A0A084WQP3.1
#=GS F7GYR9_MACMU/566-623        AC F7GYR9.2
#=GS A0A1W9IPU4_9PROT/1-55       AC A0A1W9IPU4.1
#=GS H2T6I6_TAKRU/1324-1387      AC H2T6I6.1
#=GS E9QHV3_DANRE/168-227        AC E9QHV3.2
#=GS T1FQ51_HELRO/579-642        AC T1FQ51.1
#=GS A0A0Q3TSV4_AMAAE/992-1056   AC A0A0Q3TSV4.1
#=GS A0A286ZMC0_PIG/1727-1787    AC A0A286ZMC0.1
#=GS K7G400_PELSI/464-528        AC K7G400.1
#=GS D6VP96_CAEEL/46-116         AC D6VP96.1
#=GS A0A2C9K8K9_BIOGL/656-715    AC A0A2C9K8K9.1
#=GS A0A0N5DA68_THECL/217-286    AC A0A0N5DA68.1
#=GS A0A2I0M5W7_COLLI/22-80      AC A0A2I0M5W7.1
#=GS W5JBH7_ANODA/255-314        AC W5JBH7.1
#=GS U3K711_FICAL/478-547        AC U3K711.1
#=GS A0A0R3SK17_HYMDI/368-431    AC A0A0R3SK17.1
#=GS A0A2K5LN90_CERAT/882-941    AC A0A2K5LN90.1
#=GS A0A2I3ML89_PAPAN/981-1038   AC A0A2I3ML89.1
#=GS A0A1Y6CWZ6_9PROT/279-337    AC A0A1Y6CWZ6.1
#=GS F6YXA1_ORNAN/25-81          AC F6YXA1.1
#=GS A0A091UW46_PHALP/157-214    AC A0A091UW46.1
#=GS A0A182Y9U2_ANOST/1414-1469  AC A0A182Y9U2.1
#=GS G5CQ58_9VIRU/183-243        AC G5CQ58.1
#=GS A0A093HM61_TYTAL/688-747    AC A0A093HM61.1
#=GS F7CED9_HORSE/863-922        AC F7CED9.1
#=GS W5J780_ANODA/419-480        AC W5J780.1
#=GS A0A2I3SUZ9_PANTR/222-283    AC A0A2I3SUZ9.1
#=GS A0A1V4KZ96_PATFA/661-710    AC A0A1V4KZ96.1
#=GS G7Q3F6_MACFA/833-896        AC G7Q3F6.1
#=GS A0A233SKJ9_9ACTN/138-236    AC A0A233SKJ9.1
#=GS A0A183ED35_9BILA/165-230    AC A0A183ED35.1
#=GS A0A096MM98_PAPAN/474-543    AC A0A096MM98.2
#=GS A0A1S3NW98_SALSA/262-325    AC A0A1S3NW98.1
#=GS A0A2B4RER7_STYPI/116-176    AC A0A2B4RER7.1
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