GenomeNet

Database: Pfam
Entry: Corona_I
LinkDB: Corona_I
Original site: Corona_I 
#=GF ID   Corona_I
#=GF AC   PF03187.15
#=GF DE   Corona nucleocapsid I protein
#=GF AU   Mifsud W;0000-0002-9805-6461
#=GF SE   Pfam-B_2926 (release 6.5)
#=GF GA   25.00 25.00;
#=GF TC   93.10 92.90;
#=GF NC   21.10 20.40;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF DR   INTERPRO; IPR004876;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF SQ   12
#=GS IORF_CVHN5/12-205        AC Q0ZME2.1
#=GS A0A0K2RVK8_9BETC/1-206   AC A0A0K2RVK8.1
#=GS Q2QKM7_9BETC/5-207       AC Q2QKM7.1
#=GS Q06BD3_9BETC/5-207       AC Q06BD3.1
#=GS IORF_CVHN1/12-205        AC Q5MQC5.1
#=GS IORF_CVMA5/1-207         AC P69614.2
#=GS C6GHS7_9BETC/1-207       AC C6GHS7.1
#=GS C0KYT6_9BETC/1-207       AC C0KYT6.1
#=GS C0KZ05_9BETC/1-207       AC C0KZ05.1
#=GS IORF_CVPIA/5-204         AC Q8JSP3.1
#=GS IORF_CVP67/5-207         AC Q8BB22.1
#=GS A0A0A7V3X8_9BETC/23-226  AC A0A0A7V3X8.1
IORF_CVHN5/12-205                   ...................................q-ESSRKLLGLTNLSEAIKPIIEAENPNQNSLCLL.NHKETL-SHIIPGSLGLPNFKKVETLNFQMVKEYPLLTGYPLLKQKDIGINTTGVLLKQLMVNKSSCYQDGISTISVPVHMPVHPMVMPTKVSSGSLVTKLILLFPPMFRQGILLFKKLSLLGFRLVRFCLKAIMLKAQEGLLLIAGQVHVL..NHVDPII--------------vh.................
A0A0K2RVK8_9BETC/1-206              ...............................mesls--------GPTSPTSLQIFKPEVEELNPSKLLLL.NQQEGMLFPTTLGSLELLSFKRERSFNLLKDKVCLLHQESHLLKLRGIGTDTTDVLLRQPMAINANCCHAGIFTTWEQARMLKSSMAPTLTESSGSLTSRLMLIPQLTLSIGTQAVMRLFRLGFRLVRYSLKVTILKAREGLFLIPDLLPAHpvEPLVQDQEVEPIPALEHLPL-v..................
Q2QKM7_9BETC/5-207                  .........................sgpisptslem------------------FKPGVEEFNPSKLLLLsNHQEGLLYPTILGSLELLSFKRERSLNLQRDKVCLLHQESQLLKLRGTGTDTTDVLLKQPMAISVNCCHDGTFTTWEQDRMPKTITAPTLTESSGSLVTRLMLIPRLTLSIGIQVAMRLFRLGFRLARYSLKVTILKAQEGLFLIPDLLHAHpiEPLVQDRVVEP----------ilaieplplv.........
Q06BD3_9BETC/5-207                  ..........................sgpisptnle-----------------MFKPGVEELNPSKLLLLsNHQEGMLYPTILGSLELLSFKRERSLNLQRDKVCLLHQESQLLKLRGTGTDTTDVPLKQPMATSVNCCHDGIFTILEQDRMPKTSMAPTLTESTGSLVTRLMSIPRLTFSIGTQVAMRLFRLGFRLARCSLRVTILKAQEGLLLIPDLLHAHpvEPLVQDRAVEPILAIEPLP--lv.................
IORF_CVHN1/12-205                   ...................................q-ESSRKLLGLTNLSEITKPLIEAEKPNLNSLCLL.NHKE-ILSHIIPGSPGSLNFKKVETLNFQMVKEFPLLSEYPLLKQKDIGIDTAGVLLKQLMVNKSSCYRDGISTISVPAHMPMHPMVNPSKGSSGLLITKLTLLLPPMFRQGILLLKKLSLLGFRLVRFCLKAIMLKAQEGLLLIVDQVHVL..NHVDPII--------------vh.................
IORF_CVMA5/1-207                    ....................................MESSRRPLGLTKPSVDQIIKIEAEGISQSRLQLL.NPTPGVWFPITPGFLALPSSKRERSFSLQKDKECLLPMESPLQSKRDIGIDTTAVLLKHLMGSRSNYCPDGIFTILAQGPMLEPVMETALKVSSGLQTAKRTPIPALILSKGTQAVMRLFLLGLRPARYCLRAFMLKALEGLHLLADLVRGH..NPVGQIIALEAVPTSASLPLL...................
C6GHS7_9BETC/1-207                  ....................................MESSRRPLGLTKPSVDKIMAIEAEGISPSRLQLL.SPIPGVWFPITLGFRALPNSRREKSSSLQVDKECLLPMESHLLSKRDIGIDTTVVLLKHLTGSRSNYSPDGIFTILGRAPMLEPVSETALRESSGLQIVRRIPIPLLTLLKGTQVAMRLFLLGLRPVRYCLRVSMLKAREGLHLLVDLVRGH..NPVGQIIALEAVPTSASLPLL...................
C0KYT6_9BETC/1-207                  ....................................MESSRRPLGLTKPSVDQIIKIEAEGISQSRLQLL.NPTPGVWFPITPGFLALPSSKRERSFSLQKDKECLLPMESPLQSKRDIGIDTTAVLLKHLMGSRSNYCPDGIFTILAQGPMLEPVMETALKVSSGLQTAKRTPIPALILSKGTQAVMRLFLLGLRPARYCLRAFMLKALEGLHLLADLVRGH..NPVGQIIALEAVPTSASLPLL...................
C0KZ05_9BETC/1-207                  ....................................MESSRRPLGLTKPSVDQIIKIEAEGISQSRLQLL.NPTPGVWFPITPGFLALPSSKRERSFSLQKDKECLLPMESPLQSKRDIGIDTTAVLLKHLMGSRSNYCPDGIFTILAQGPMLEPVMETALKVSSGLQTAKRTPIPALILSKGTQAVMRLFLLGLRPARYCLRAFMLKALEGLHLLADLVRGH..NPVGQIIALEAVPTSASLPLL...................
IORF_CVPIA/5-204                    .........................sgpisptslem------------------FKPGVEEFNPSKLLLLsNHQEGLLYPTILGSLELLSFKKERSLNLQRDKVCLLHQESQLLKLRGTGTDTTDVLLKQPMAISVNCCHDGTFTTWEQDRMPNTSTAPTLTESSGSLVTRLILIPRLTLSIGIQVAMRLFRLGFRLARYSLKVTILKAQEGLLLIPDLLRAH..P--------------------ieplvqdhvvepilaiepp
IORF_CVP67/5-207                    .........................sgpisptslem------------------FKPGVEEFNPSKLLLLsNHQEGLLYPTILGSLELLSFKRERSLNLQRDKVCLLHQESHLLKLRGTGTDTTDVLLKQPTAISVNCCHDGTFTTWEQDRMPKTSTAPTLTESSGSLVTRLILIPRLTLSIGIQVAMRLFRLGFRLARYSLKVTILKAQEGLLLIPDLLRVHpiEPLVQDRVVEPI---------laieplplv..........
A0A0A7V3X8_9BETC/23-226             vmaaflsgptrrnlimliaeveepnlskqliprlqe----------------------------------.----EMLYHFTPGSLELLSFKKGKNLDLNKDKVCPLPMESLPQKKRDTGIGTTESPIELQMDNNGSCYPDGIFTISEQGRMRTNNTGRTSTVLFGLLVQMLMYVPQRTFQIGILLATKLSRLGLRLARFCLKAIMLKAQEGLLLARDLALVH..-PAEHLVSAEA----------eaettqllei.........
#=GC seq_cons                       .....................................................hhK.tsEths.S+L.LL.N.p.GlhaPhh.GSLtL.SFKRERShsLQ+DK.CLL..ES.LLKhRshGhDTTsVLLKp.MuspuNCC.DGIFTIhtQs+M.csshsssLp.SSG.Lls+Lh.IPtLhLShGhQlsMRLFhLGhRLARYsL+shhLKApEGLhLlsDLl+uH..pPlsQ.hslEs.............................
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