GenomeNet

Database: Pfam
Entry: DUF334
LinkDB: DUF334
Original site: DUF334 
#=GF ID   DUF334
#=GF AC   PF03904.13
#=GF DE   Domain of unknown function (DUF334)
#=GF AU   Finn RD;0000-0001-8626-2148
#=GF SE   DOMO:DM04800;
#=GF GA   21.40 21.40;
#=GF TC   21.40 21.70;
#=GF NC   21.20 20.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 45638612 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   Domain_of_unknown_function
#=GF DR   INTERPRO; IPR005602;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   Staphylococcus aureus plasmid proteins with no characterised
#=GF CC   function.
#=GF SQ   23
#=GS B9ECE4_MACCJ/2-231       AC B9ECE4.1
#=GS R9IR01_9FIRM/31-242      AC R9IR01.1
#=GS L0JHB2_PREDD/1-151       AC L0JHB2.1
#=GS A0A0D0SIY9_STAGA/1-80    AC A0A0D0SIY9.1
#=GS Q938J2_9CAUD/48-232      AC Q938J2.1
#=GS W1UP46_9FIRM/1-123       AC W1UP46.1
#=GS R9K0Y9_9FIRM/16-168      AC R9K0Y9.1
#=GS A0A0D0SDQ2_STAGA/1-80    AC A0A0D0SDQ2.1
#=GS A0A0D0SMP0_STAGA/1-80    AC A0A0D0SMP0.1
#=GS A0A1D4RJ60_STACC/1-74    AC A0A1D4RJ60.1
#=GS A0A1D4RH60_STACC/1-151   AC A0A1D4RH60.1
#=GS K9AR70_9STAP/1-122       AC K9AR70.1
#=GS A0A1N6GYQ8_9GAMM/96-227  AC A0A1N6GYQ8.1
#=GS A0A194PKS4_PAPXU/57-190  AC A0A194PKS4.1
#=GS A0A1D4RHR8_STACC/1-151   AC A0A1D4RHR8.1
#=GS A0A0D0RKA0_STAGA/1-80    AC A0A0D0RKA0.1
#=GS A0A1D4RDG4_STACC/2-139   AC A0A1D4RDG4.1
#=GS L0JF75_PREDD/1-151       AC L0JF75.1
#=GS A0A0D0SN95_STAGA/1-77    AC A0A0D0SN95.1
#=GS W1UDY4_9FIRM/23-174      AC W1UDY4.1
#=GS L7WUK2_STAWS/1-151       AC L7WUK2.1
#=GS A0A1D4RG27_STACC/1-151   AC A0A1D4RG27.1
#=GS A0A0Q9Y5F1_9STAP/2-142   AC A0A0Q9Y5F1.1
B9ECE4_MACCJ/2-231                  ...................................k-MALQSRNSDENEKKN...ENTMNMQTRSKLTGTQSQKIQKTLENEELQELKKQNKLVIKYISEMKEQQDLREKELQAI......KS..SLKKTTEDFQGRGKKVHN.DFVRLLQ......KNLNRVNA..ED.IEIE....VRKD...VYGVREEIHSMLREVKQSHE........HYQKRQKQLFTGI.GA.MLLVFMLFALIMTIGRDFMGFLHVDVLQNAIASKIKASEGFISVLWYIAYGLPYILAIGLFIWLYEWIRARFHD......................................
R9IR01_9FIRM/31-242                 ..............................enkakq---NQKVKQNANGKEN...GTTNQGQNQKKSLATEYC-EQIMAAARNLEETKREYKIVTDYLTDIQTLENLPEDEWKKIletaqnIQ..NLNEARDAYLNKSKTISDaQFAQMEQledempEIIKRLQS..NEaYQTT....VKRD...MQYLEGEREE-WRYYQDSLE........QEEDILRKLFYGLaGTyVLAVGVIVILGMVMKFDIMMPFVIATL-----------------------------------------------iagavggimalr..........................
L0JHB2_PREDD/1-151                  .................................mtg----------------...------------------------------------------------------------......--..----ATKDFRDNGVKTHN.AFINILK......EKLDKVDT..DE.LANI....IGRD...IYKVRDENERMLQEVRSSHE........EYQKRIKLMYRGF.GA.MLLVFMLFALVMTIGSDFMDFIHIDILQKAIASKIKASEGFMTFIWYIAYGLPYIVAIGGFIYLYEWIRKKF--ev....................................
A0A0D0SIY9_STAGA/1-80               ....................................----------------...-----------LTGTQSQKIQKTLENEELQELKKQNKLVIKYISEMKEQQDVREKELQAI......KS..SLKKTTEDFQGRGKKVHN.DFVRLLQ......KNLN----..--.----....----...--------------------........-------------.--.--------------------------------------------------------------------------......................................
Q938J2_9CAUD/48-232                 ........................iaeyvyshedsv----------------...--------------------------EENEKLNSNIDFIISEFSGTDTQKDILIKNLDKI......KSnySLAQTQKKFILKNSQEAK.DVLEKII......PELNTLAK..ET.SNLA....ATND..eLKKQSAETDGVLQKVKQGVD........DVRNTKSSIYTDF.IA.ILGVFSAFVFVMFGGIDV--------------------------------------------------------araifdigndlqtldlsrmitvsslmligvltlmysll
W1UP46_9FIRM/1-123                  .............................kvvneva----------------...------------------------------------------------------------......--..------------------.-------......--------..PE.VADT....FKKE...SATVKESTKKIEDTFNKLKN........DITRYKQIAVIGM.VA.FFVLACLILLVTSLTNGAFEFLGVSHLYEAITAKMKASHGFITVLWFITYFIPVAIWTGIVILL----------gyltrry...............................
R9K0Y9_9FIRM/16-168                 ................tqqdaelaqnekirierlee----------------...--------------------------------------------------KLDYQNQEMV......YA..VYKKAVNNRV-FRTPVGY.DFLKRLQ......RILYDNAQ..ED.IANI....PIYG...VYSMRESANPTIERIQASRKpvkekpkqEFFSRKTSIIVNI.GL.LVLVIVMFV-IATTGSNPTIVNYERTLQNRY-------------------------------------------aeweqq................................
A0A0D0SDQ2_STAGA/1-80               ....................................----------------...---------------------------------KQNKLVIKYISEMKEQQDLREKELQAI......KS..SLKKTTEDFQGRGKKVHN.DFVRLLQ......KNLNRVNA..ED.IEIE....VRKD...VYGVREEI------------........-------------.--.--------------------------------------------------------------------------......................................
A0A0D0SMP0_STAGA/1-80               ....................................----------------...---------------------KTLENEELQELKKQNKLVIKYISEMKEQQDLREKELQAI......KA..SLKKTTEDFQGRGKKVHN.DFVRLLQ......KNLNRVNA..ED.IEIE....----...--------------------........-------------.--.--------------------------------------------------------------------------......................................
A0A1D4RJ60_STACC/1-74               ....................................----------------...------------------------------------------------------------......--..------------------.-------......--------..--.----....----...--------------------........-------------.--.MLLVFMLFALIMTIGSDFMSFLHVDVLQKAIASKIRASEGFMTLVWYIAYGLPYIFAIGLFIGLYEWIRAKFRD......................................
A0A1D4RH60_STACC/1-151              ....................................----------------...------------------------------------------------------------......--..-MKEATKEFRDKSLKIRN.DFVDVLQ......EKLKQVDT..EE.LKDI....LGRD...IYRVREENDRMLQEVRASHE........HYKKRQKQLFTGI.GA.MLLVFMLFALIMTIGSDFMSFLPIDTLQKVIADKIAASEGFMTFVWYIAYGLPYLLGIIAFVVLYEWIRAKFHD......................................
K9AR70_9STAP/1-122                  ...................................m----------------...------------------------------------------------------------......--..------------------.-------......------ET..DD.LANI....IGRD...IYKVRDENKRMLQEVRASHE........AYQKKIKLMYRGI.GT.MLLVFMLFALVMTIGSDFMDFIHVDILQKAIASKLKASEGFMTLVWYIAYGLPYILAIGGFIYLYEWIRKKF--ev....................................
A0A1N6GYQ8_9GAMM/96-227             .........................ssllstqpaar----------------...-----------------------------QQLKEAQK-TIKDLNEKLQQQNTQLTTLRAE......NE..DLKKRLSEAQKQLFTLKK.DYDHLVK......TAGNAVRL..DE.ENQQ....LKKD...VARLEQEN-AMLKDQIAHSE........DAMKRQW-FLTGA.GV.LLLGLLL-------------------------------------------------------------------grffrl................................
A0A194PKS4_PAPXU/57-190             ............................ccgqvpks----------------...---GNTSSRSQSEDIPTDHSTKTLRNKPIRESPTAHE-ECNYVTE----DKLRTIMQQEL......AN..LFKNNIKDLICAELKIIN.DKIDSFQ......EAISFINTqyEE.IKNI....LQEKstmISTLRTENDKLKKDVKD---........-------------.--.--------------------------------------------------------------------------lgnrlni...............................
A0A1D4RHR8_STACC/1-151              ....................................----------------...------------------------------------------------------------......--..-MKKATQEFHAKGIETHN.IFVTALQ......DNLDTINA..KD.IKKK....IAKD...VEDTVRENKKMIEEVKQSHE........HYQKKQKHLFTGI.GA.MLLVFMLFALIMTIGSDFMSFLHVDILQKAIASKLKASEGFMTFIWYIAYGLPYVLAIGLFIGLYEWIRERFHD......................................
A0A0D0RKA0_STAGA/1-80               ....................................----------------...------------------------------------------------------------......--..------------------.-------......--------..--.IEIE....VRKD...VYGVREEIHSMLREVKQSHE........HYQKRQKQLFTGI.GA.MLLVFMLFALIMTIGRDFMGFLHVDVLQNAIASKIKA-------------------------------------......................................
A0A1D4RDG4_STACC/2-139              lakidtkhitedvakafrqekdgmyedlkgirmanq----------------...------------------------------------------------------------......--..------------------.-------......--------..--.----....----...--EHHEVLNNSLKENQKLNS........TFKSSIKSMTHGI.GA.LYFVILLMALVSIVTGPIGNVLGIDNMYSALHHTITHTQSVWGYLWYIAYIVPYILFILV--------------lwaclsllr.............................
L0JF75_PREDD/1-151                  ...................................m----------------...------------------------------------------------------------......--..--TEATKDFRDSAIKTHN.DFIDILK......KKLDKVET..DE.LANI....IGRD...IYKVRDENKRMLQEVRASHE........HYKKRQKQLFTGI.GT.MLLVFMLFALVMTIGSDFMDFIHVDILQKAIASKLKASEGFMTLVWYIAYGLPYILAISGFIYLYEWIRKKF--ev....................................
A0A0D0SN95_STAGA/1-77               ....................................----------------...------------------------------------------------------------......--..------------------.-------......--------..--.----....----...--------------------........------------I.GA.MLLVFMLFALIMTIGRDFMGFLHVDVLQNAIASKIKASEGFISVLWYIAYGLPYILAIGLFIWLYEWIRARFHD......................................
W1UDY4_9FIRM/23-174                 ................................kntn----QTRTSSQNDQLQtvmNQLNNIQASLNQIGTNSPKTQMSLSVA--DKLQNQQDLLMKRLEEIEKREYERNKRHDQL......LT..TIETTTSNFNQATDFAQK.RFISAAR......HYIERINN..DN.LKQDfqtaIQKE...LEDVKADTQNVVKEVQNNQ-........-------------.--.--------------------------------------------------------------------------selrqan...............................
L7WUK2_STAWS/1-151                  .................................mtg----------------...------------------------------------------------------------......--..----ATKDFRDNGVKVQN.DFTNILK......EKLDKVNT..DE.LANI....IGRD...IYKVRDENKRMLQEVRSSHE........EYQKRIKLMYRGL.GA.IILVFMLFALVMTIGSDFMDFIHIDILQKAIASKIKASEGFMTFVWYIAYGLPYIVAIGGFIYLYEWIRKKF--ei....................................
A0A1D4RG27_STACC/1-151              ....................................----------------...------------------------------------------------------------......--..-MKEATKEFRDKSLKIRN.DFVDVLQ......EKLKQVDT..EE.LKDI....LGRD...IYRVREENDRMLQEVRASHE........HYKKRQKQLFTGI.GA.MLLVFMLFALIMTIGSDFMSFLHVDVLQKAIASKIRASEGFMTFVWYIAYALPYIFAIGLFIGLYEWIRAKFYD......................................
A0A0Q9Y5F1_9STAP/2-142              lskidtkhmtedvakafrqekdgmyedlkgirmanr----------------...------------------------------------------------------------......--..------------------.-------......--------..--.----....----...--EHHEALNNSLKENQKLNS........TFKSSIKSMTHGI.GA.LYFVILLMALVSIVTGPIGHVLGIDSMYSALHHTITHTQSVWGYLWYIAYIVPYILFVLILLGC----------lsllrlfe..............................
#=GC seq_cons                       ...............................................................................................................................tpshpph.ttthphtp.pahphhp......c.lptlpt..--.lt......lt+-...l.pl+cEtpphlp-spttpp........phppp.p.hhhGh.Gs.hllVhhLhsLlhslstshhthlhlchL.pslttphtt...........................................................................
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