GenomeNet

Database: Pfam
Entry: HTH_Tnp_1_2
LinkDB: HTH_Tnp_1_2
Original site: HTH_Tnp_1_2 
#=GF ID   HTH_Tnp_1_2
#=GF AC   PF13022.8
#=GF DE   Helix-turn-helix of insertion element transposase
#=GF AU   Coggill P;0000-0001-5731-1588
#=GF SE   pdb_2ao9
#=GF GA   27.90 27.90;
#=GF TC   27.90 27.90;
#=GF NC   27.80 27.80;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF CL   CL0123
#=GF DR   INTERPRO; IPR024978;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This is a family of largely phage proteins which are likely to
#=GF CC   be a helix-turn-helix insertion elements.
#=GF SQ   174
#=GS A0A345ASY2_9CAUD/1-119   AC A0A345ASY2.1
#=GS A0A398BFC3_9BACI/1-121   AC A0A398BFC3.1
#=GS A0A2V3PL98_9BACT/5-90    AC A0A2V3PL98.1
#=GS F5IXM5_9BACT/2-95        AC F5IXM5.1
#=GS A0A2V5JV42_9BACL/18-152  AC A0A2V5JV42.1
#=GS A0A4D5ZZ29_9CAUD/1-112   AC A0A4D5ZZ29.1
#=GS F5IYK0_9BACT/1-86        AC F5IYK0.1
#=GS A0A385NS30_9BACI/1-119   AC A0A385NS30.1
#=GS A0A6F9ZGM3_9BACT/2-97    AC A0A6F9ZGM3.1
#=GS A0A4V6RXM1_9BACI/6-136   AC A0A4V6RXM1.1
#=GS A0A3M7KFA1_9BACT/2-117   AC A0A3M7KFA1.1
#=GS A0A1S8TW17_9CLOT/1-97    AC A0A1S8TW17.1
#=GS M1MJE6_9CLOT/2-125       AC M1MJE6.1
#=GS F5J1K8_9BACT/1-81        AC F5J1K8.1
#=GS A0A077J9A9_9BACI/4-114   AC A0A077J9A9.1
#=GS A0A1S2LKV1_9BACI/9-131   AC A0A1S2LKV1.1
#=GS A0A1V2SIN0_9BACI/8-111   AC A0A1V2SIN0.1
#=GS A0A1W6JNP4_9CAUD/2-122   AC A0A1W6JNP4.1
#=GS M8E644_9BACL/3-136       AC M8E644.1
#=GS A0A221MCG0_9BACI/2-135   AC A0A221MCG0.1
#=GS V9GDY6_9BACL/5-143       AC V9GDY6.1
#=GS A0A2W0HE00_9BACI/10-139  AC A0A2W0HE00.1
#=GS A0A0M0L5T3_9BACI/1-125   AC A0A0M0L5T3.1
#=GS A0A4D6A6S3_9CAUD/2-115   AC A0A4D6A6S3.1
#=GS A0A265Q2Q3_9FIRM/7-124   AC A0A265Q2Q3.1
#=GS A0A1E5QKL7_9CYAN/17-101  AC A0A1E5QKL7.1
#=GS A0A345AVM0_9CAUD/1-119   AC A0A345AVM0.1
#=GS A0A1K1YJ84_9BACL/2-52    AC A0A1K1YJ84.1
#=GS S4EYI4_ENTFL/1-121       AC S4EYI4.1
#=GS R7GUP9_9FIRM/1-90        AC R7GUP9.1
#=GS A0A2N0ZFB8_9BACI/1-129   AC A0A2N0ZFB8.1
#=GS A0A329L6J0_9BACL/6-106   AC A0A329L6J0.1
#=GS R2PXF7_9ENTE/4-129       AC R2PXF7.1
#=GS A0A1Q9PXJ6_9BACI/5-128   AC A0A1Q9PXJ6.1
#=GS A0A0B0IKX4_9BACI/1-127   AC A0A0B0IKX4.1
#=GS A0A4Z0QQ70_9FIRM/14-135  AC A0A4Z0QQ70.1
#=GS A0A0U1KWM5_9FIRM/23-134  AC A0A0U1KWM5.1
#=GS A0A6I3SLN2_HELMO/2-126   AC A0A6I3SLN2.1
#=GS F7NK75_9FIRM/1-104       AC F7NK75.1
#=GS A0A4R2RIJ9_9FIRM/12-135  AC A0A4R2RIJ9.1
#=GS A0A2S1H2K3_9BACI/1-128   AC A0A2S1H2K3.1
#=GS A0A0X3AS84_9FLAO/11-125  AC A0A0X3AS84.1
#=GS A0A0P0IZC1_9CAUD/2-127   AC A0A0P0IZC1.1
#=GS A0A372LQ37_9BACI/13-139  AC A0A372LQ37.1
#=GS A0A1B7LF15_9FIRM/5-124   AC A0A1B7LF15.1
#=GS A0A2S0UBS0_9BACL/1-118   AC A0A2S0UBS0.1
#=GS A0A521F9L8_9BACL/1-119   AC A0A521F9L8.1
#=GS A0A235B8E2_9BACL/37-155  AC A0A235B8E2.1
#=GS A0A451EFR7_9CAUD/5-127   AC A0A451EFR7.1
#=GS A0A6I3SMT7_HELMO/2-128   AC A0A6I3SMT7.1
#=GS A0A191KBQ0_9CAUD/5-127   AC A0A191KBQ0.1
#=GS F5J3C7_9BACT/1-83        AC F5J3C7.1
#=GS A0A4R1Q3A3_9FIRM/43-160  AC A0A4R1Q3A3.1
#=GS A0A6C0QMZ5_9BACL/1-119   AC A0A6C0QMZ5.1
#=GS A0A1W6JP86_9CAUD/6-124   AC A0A1W6JP86.1
#=GS A0A1L2JXH0_9CAUD/5-127   AC A0A1L2JXH0.1
#=GS A0A329KNP3_9BACL/4-133   AC A0A329KNP3.1
#=GS F5IYR4_9BACT/1-83        AC F5IYR4.1
#=GS F9UA81_9GAMM/1-83        AC F9UA81.1
#=GS A0A1T4RCZ7_9ENTE/1-125   AC A0A1T4RCZ7.1
#=GS R6N2B3_9CLOT/1-112       AC R6N2B3.1
#=GS A0A4R2BG56_9BACI/1-129   AC A0A4R2BG56.1
#=GS A0A4R2RCD7_9FIRM/8-128   AC A0A4R2RCD7.1
#=GS A0A1Y4CDZ0_9BACT/4-98    AC A0A1Y4CDZ0.1
#=GS A0A1M4VCC9_9BACL/1-123   AC A0A1M4VCC9.1
#=GS Q8TJF7_METAC/16-136      AC Q8TJF7.1
#=GS A0A549YEN4_9BACI/9-133   AC A0A549YEN4.1
#=GS A0A3P1SPH6_9BACT/18-102  AC A0A3P1SPH6.1
#=GS A0A0M3R9J4_9BACI/1-137   AC A0A0M3R9J4.1
#=GS H1XPW3_9BACT/2-102       AC H1XPW3.1
#=GS A0A3R9QMH4_9BACI/2-138   AC A0A3R9QMH4.1
#=GS V9W8H4_9BACL/1-119       AC V9W8H4.1
#=GS A0A095Y653_9BACT/6-90    AC A0A095Y653.1
#=GS A0A0M2VZT0_9BACL/1-116   AC A0A0M2VZT0.1
#=GS T0BU85_ALIAG/1-134       AC T0BU85.1
#=GS A0A369BPF1_9BACL/1-118   AC A0A369BPF1.1
#=GS A0A5Q2MYC7_9FIRM/1-128   AC A0A5Q2MYC7.1
#=GS A0A242KD74_9ENTE/3-134   AC A0A242KD74.1
#=GS A0A151Z268_9BACL/1-58    AC A0A151Z268.1
#=GS A0A432LA83_9BACI/1-128   AC A0A432LA83.1
#=GS S5VL37_9CAUD/28-149      AC S5VL37.1
#=GS C8VXY1_DESAS/2-126       AC C8VXY1.1
#=GS S0JZD9_9ENTE/1-110       AC S0JZD9.1
#=GS A0A1H0H0I1_9BACT/3-123   AC A0A1H0H0I1.1
#=GS A0A088GGH2_9LACT/1-108   AC A0A088GGH2.1
#=GS A0A6I3SMW1_HELMO/9-129   AC A0A6I3SMW1.1
#=GS A0A4V2SW67_9FIRM/1-127   AC A0A4V2SW67.1
#=GS A0A4D6AQP6_9CAUD/1-113   AC A0A4D6AQP6.1
#=GS A0A1I0E9U5_9BACI/1-120   AC A0A1I0E9U5.1
#=GS A0A1I3UMJ1_9BACL/1-97    AC A0A1I3UMJ1.1
#=GS A0A229UHW9_9BACL/3-123   AC A0A229UHW9.1
#=GS A0A3A9E2G7_9BACT/1-113   AC A0A3A9E2G7.1
#=GS R7F877_9CLOT/1-116       AC R7F877.1
#=GS C6J0U9_9BACL/1-141       AC C6J0U9.1
#=GS A0A1C0A7L9_9FIRM/1-104   AC A0A1C0A7L9.1
#=GS A0A559JMA3_9BACL/6-127   AC A0A559JMA3.1
#=GS L0P6X1_9CAUD/1-127       AC L0P6X1.1
#=GS W7BZG4_9LIST/4-86        AC W7BZG4.1
#=GS A0A1J0GI95_9CLOT/5-92    AC A0A1J0GI95.1
#=GS A0A430A199_9ENTE/1-123   AC A0A430A199.1
#=GS W4P486_9BACE/2-92        AC W4P486.1
#=GS A0A345AW51_9CAUD/1-119   AC A0A345AW51.1
#=GS W7BB31_9LIST/1-118       AC W7BB31.1
#=GS A0A1Y4TKH5_9FIRM/5-99    AC A0A1Y4TKH5.1
#=GS K6DDC2_9BACI/3-136       AC K6DDC2.1
#=GS A0A0N7GFF5_9CAUD/1-119   AC A0A0N7GFF5.1
#=GS A0A0M9WZ61_9BACI/7-137   AC A0A0M9WZ61.1
#=GS A0A3D9HP89_9BACL/5-129   AC A0A3D9HP89.1
#=GS A0A269WAY6_9BACL/1-141   AC A0A269WAY6.1
#=GS A0A2V3PQ16_9BACT/4-90    AC A0A2V3PQ16.1
#=GS A0A0R1Y1G9_9LACO/1-114   AC A0A0R1Y1G9.1
#=GS A0A191KBV2_9CAUD/5-127   AC A0A191KBV2.1
#=GS A0A0S2MYF8_9CAUD/1-105   AC A0A0S2MYF8.1
#=GS V6MJ66_9BACL/1-135       AC V6MJ66.1
#=GS A0A223KV60_9BACI/9-143   AC A0A223KV60.1
#=GS A0A235B221_9BACL/7-135   AC A0A235B221.1
#=GS Q03G30_PEDPA/4-129       AC Q03G30.1
#=GS A0A6I3SMV3_HELMO/2-126   AC A0A6I3SMV3.1
#=GS A0A4R2R9S8_9FIRM/8-128   AC A0A4R2R9S8.1
#=GS A0A517SEV8_9BACT/19-86   AC A0A517SEV8.1
#=GS A0A1I0MME0_9BACT/3-86    AC A0A1I0MME0.1
#=GS A0A1M5C4C3_9BACT/2-95    AC A0A1M5C4C3.1
#=GS A0A3D9I692_9BACL/3-139   AC A0A3D9I692.1
#=GS A0A075JZI2_9BACI/1-128   AC A0A075JZI2.1
#=GS A0A0P6WU53_9CHLR/1-126   AC A0A0P6WU53.1
#=GS A6CMA4_9BACI/1-125       AC A6CMA4.1
#=GS A0A139ZPD9_9CAUD/3-126   AC A0A139ZPD9.1
#=GS A0A6I3SQ24_HELMO/1-127   AC A0A6I3SQ24.1
#=GS A0A4Q0AH55_9BACT/4-114   AC A0A4Q0AH55.1
#=GS H2J441_MARPK/5-126       AC H2J441.1
#=GS A0A0S3QSN4_THET7/5-125   AC A0A0S3QSN4.1
#=GS A0A6I3SPZ2_HELMO/1-127   AC A0A6I3SPZ2.1
#=GS A0A0L6JH04_9FIRM/1-130   AC A0A0L6JH04.1
#=GS A0A0C2RFE3_9BACL/2-120   AC A0A0C2RFE3.1
#=GS A0A1T4YCH1_9CLOT/1-125   AC A0A1T4YCH1.1
#=GS F5J0S0_9BACT/1-87        AC F5J0S0.1
#=GS A0A0N0I822_9BACI/1-73    AC A0A0N0I822.1
#=GS I3VYX1_9CAUD/1-113       AC I3VYX1.1
#=GS A0A139ZPM3_9CAUD/3-126   AC A0A139ZPM3.1
#=GS H5Y270_9FIRM/5-120       AC H5Y270.1
#=GS F5ISG8_9BACT/3-88        AC F5ISG8.1
#=GS A0A5R9GJ10_9BACL/9-108   AC A0A5R9GJ10.1
#=GS W3AM09_9FIRM/2-121       AC W3AM09.1
#=GS A0A3N5BB50_9STAP/1-127   AC A0A3N5BB50.1
#=GS A0A1K1XH00_9BACL/1-129   AC A0A1K1XH00.1
#=GS A0A3N2NAW6_9BACT/5-104   AC A0A3N2NAW6.1
#=GS A0A248TLR9_9BACI/9-140   AC A0A248TLR9.1
#=GS A0A2N0ZEA0_9BACI/5-134   AC A0A2N0ZEA0.1
#=GS S5VLB9_9CAUD/28-149      AC S5VLB9.1
#=GS A0A2V3PRW9_9BACT/2-91    AC A0A2V3PRW9.1
#=GS A0A0L6JKQ5_9FIRM/11-144  AC A0A0L6JKQ5.1
#=GS A0A386PHM5_CLOSE/6-124   AC A0A386PHM5.1
#=GS S0L258_ENTAV/1-101       AC S0L258.1
#=GS X4ZRA1_9BACL/1-133       AC X4ZRA1.1
#=GS L1QGB9_9CLOT/4-124       AC L1QGB9.1
#=GS A0A0D4CJU0_LACMC/3-132   AC A0A0D4CJU0.1
#=GS A0A0P0ICX3_9CAUD/2-127   AC A0A0P0ICX3.1
#=GS Q597W0_9CAUD/5-127       AC Q597W0.1
#=GS A0A2L1UDZ4_9BACL/1-119   AC A0A2L1UDZ4.1
#=GS A0A1H9SRN5_9BACI/1-118   AC A0A1H9SRN5.1
#=GS A0A3Q9QXK4_9BACI/1-131   AC A0A3Q9QXK4.1
#=GS A0A1A5WQU8_9BACL/1-116   AC A0A1A5WQU8.1
#=GS I6TG19_9CAUD/6-122       AC I6TG19.1
#=GS Q81ES4_BACCR/13-146      AC Q81ES4.1
#=GS Q81ES4_BACCR/13-146      DR PDB; 2AO9 I; 23-133;
#=GS Q81ES4_BACCR/13-146      DR PDB; 2AO9 D; 23-132;
#=GS Q81ES4_BACCR/13-146      DR PDB; 2AO9 E; 14-132;
#=GS Q81ES4_BACCR/13-146      DR PDB; 2AO9 F; 16-131;
#=GS Q81ES4_BACCR/13-146      DR PDB; 2AO9 C; 14-132;
#=GS Q81ES4_BACCR/13-146      DR PDB; 2AO9 H; 15-130;
#=GS Q81ES4_BACCR/13-146      DR PDB; 2AO9 B; 14-131;
#=GS Q81ES4_BACCR/13-146      DR PDB; 2AO9 G; 24-132;
#=GS Q81ES4_BACCR/13-146      DR PDB; 2AO9 A; 13-132;
#=GS A0A4Q1TAR9_9BACL/7-129   AC A0A4Q1TAR9.1
#=GS A0A0Q7IQF0_9BACL/3-123   AC A0A0Q7IQF0.1
#=GS A0A345AZX7_9CAUD/1-119   AC A0A345AZX7.1
#=GS A0A142F1L5_9CAUD/1-129   AC A0A142F1L5.1
#=GS A0A437KBM4_9BACI/1-120   AC A0A437KBM4.1
#=GS A0A0R1WTY7_9LACO/6-136   AC A0A0R1WTY7.1
#=GS A0A4V1AIZ9_9LACT/1-116   AC A0A4V1AIZ9.1
#=GS A0A191KB93_9CAUD/5-127   AC A0A191KB93.1
#=GS C8VXN7_DESAS/1-124       AC C8VXN7.1
#=GS F2JQV2_CELLD/21-138      AC F2JQV2.1
A0A345ASY2_9CAUD/1-119              ..........................mtf---KK-S....LSTEQYTAIGYL..AL.P..K....K..........GG.KTYAEIAEICGVH...PNTIG.N.WR...KDQM..F.......E..A....E..L.....K...R.......Q..MV.......R...NS..Q.EK..LP.......E.....L.....I....D........SL....TEiA....I....R....D....G.--..........NAA..MAK..LAL...QI.N.G...M.LTDRI..EV.E.T...T.GP..DQV..DV--------ealnqr...............................................................
A0A398BFC3_9BACI/1-121              .............................MAKRI--....LNEKQWAAITIL..SQ.P..K....R..........AG.MTYEEVAKEVGVA...KSTLF.E.WK...KLDE..F.......N..D....A..I.....K...N.......A..VV.......R...NT..T.DR..LP.......D.....M.....F....D........SM....ID.N....I....I....E....T.-G..........NAA..AFR..TVV...QL.H.G...M.LTEKV..EV.A.S...K.GD..---..----------aadidsmraeieri.......................................................
A0A2V3PL98_9BACT/5-90               ....................nrslsdkit-------....---------ALI..EE.D..N....Y..........--.-TITEICCIVGIS...RKIFY.E.WK..aTKPD..F.......A..E....A..L.....D...Q.......A..VE.......A...RE..E.KL..KQ.......K.....A.....R....Q........SM....RQ.K....L....E....G....-.--..........---..---..---...--.-.-...-.-----..--.-.-...-.--..---..----------yrqietkttyvask.......................................................
F5IXM5_9BACT/2-95                   ................akynqkivnricd-------....----------L-..IS.K..D....S..........--.YTIAEICEKVKIS...ESTYY.E.WL..kTKSE..F.......S..E....D..I.....K...K.......A..QD.......K...LT..Q.NL..LI.......E.....C.....N....R........SL....VK.L....I....K....G....Y.--..........---..---..---...--.-.-...-.-----..--.-.-...-.--..---..----------tiqekktvtadtgrkden...................................................
A0A2V5JV42_9BACL/18-152             .......................prpymk------G....LTVTEIRAVELL..AR.K..S....P..........-Q.QSYREIANTLGIS...ERHLR.R.IR...DRRQ..V.......E..L....A..V.....R...E.......R..AL.......E...IQ..S.ED..LP.......D.....V.....L....S........AL....AK.K....A....K....R....G.--..........DLK..AIE..MYL...VM.Q.G...I.NVNKS..EV.V.Q...K.VH..KVS..E---------pleklsdaeldaelealkkevmgg.............................................
A0A4D5ZZ29_9CAUD/1-112              ............................m------V....LSKRQLKAIELL..FE.G..R....F..........--.-KDYQIAEEVKVT...PQTLV.N.WK...KDPE..F.......V..E....A..L.....R...Q.......K..GM.......N...YM..H.T-..--.......-.....-.....-....-........--....--.-....-....-....-....-.--..........---..---..---...--.-.-...-.-----..--.-.-...-.--..---..----------tmiapliknqfklamtakseqvrqsatkdlldrlgvgdeqhvkidmeadinhsn...............
F5IYK0_9BACT/1-86                   ..........................mky-------....---KEKIATEIIrmIE.Q..D....L..........--.CSISEICKSFKIS...RKTFY.E.WK..kEKPE..F.......K..E....A..V.....E...E.......A..ID.......H...--..-.--..--.......-.....-.....-....-........--....--.-....-....-....-....-.--..........---..---..---...--.-.-...-.-----..--.-.-...-.--..---..----------redvmiasariglkqllegyvqkkekityv.......................................
A0A385NS30_9BACI/1-119              ...........................ma---KA-K....LNEKQIAAIEFL..SL.P..K....R..........GG.MTYEEIAKEVGVA...KSTLF.E.WK...KQDA..F.......N..D....A..L.....K...T.......E..IV.......R...KT..T.DR..LP.......E.....M.....F...dS........ML....TN.I....I....E....T....G.--..........NAA..AFR..TIV...QL.H.G...M.LTERV..EV.D.N...K.GG..NVA..DID-------amkaei...............................................................
A0A6F9ZGM3_9BACT/2-97               ...............akfskktvdkivgl-------....------------..VK.S..D....-..........-T.YTIAEICRQVGIT...PKTYH.Q.WV..nDYPD..F.......A..D....A..I.....E...Q.......A..KE.......E...RM..Q.FF..VQ.......E.....A.....K....K........SL....LK.K....I....Q....G....Y.--..........---..---..---...--.-.-...-.-----..--.-.-...-.--..---..----------evtetkvvtipgkkkdergn.................................................
A0A4V6RXM1_9BACI/6-136              ...................kqkqipvpsg-------....LSEEQVNLAKAF..VK.E..R....H..........ETgISVQEFCSKYGKS...TKTFY.E.WK...NDEK..F.......E..S....Y..L.....T...A.......L..GG.......T...IV..S.DD..ER.......E.....A.....YqivkK........KI....MQ.M....A....T....K....Q.NA..........SVK..EIE..LYL...NT.F.S...Y.VVEAE..KQ.E.R...-.--..---..----------mkelgiqpahekagen.....................................................
A0A3M7KFA1_9BACT/2-117              ....................kkltpilin-------....------KAIDLY..AN.E..P....-..........-N.ITHSAVADRLGIT...NKTLM.K.LR...KQPD..F.......W..N....S..V.....Y...A.......E..FC.......I...HM..E.GE..LP.......D.....I.....V....R........AL....LR.E....C....K....A....G.--..........SVQ..AIR..LLL...EW.A.G...K.LNKTL..DI.-.-...-.--..---..----------nisspfekwltangkkies..................................................
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