GenomeNet

Database: Pfam
Entry: Herpes_capsid
LinkDB: Herpes_capsid
Original site: Herpes_capsid 
#=GF ID   Herpes_capsid
#=GF AC   PF06112.12
#=GF DE   Gammaherpesvirus capsid protein
#=GF AU   Moxon SJ;0000-0003-4644-1816
#=GF SE   Pfam-B_9200 (release 9.0)
#=GF GA   25.00 25.00;
#=GF TC   25.00 43.70;
#=GF NC   24.30 24.70;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF DR   INTERPRO; IPR009299;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family consists of several Gammaherpesvirus capsid
#=GF CC   proteins. The exact function of this family is unknown.
#=GF SQ   20
#=GS A0A2D0ZPL9_9GAMA/5-83    AC A0A2D0ZPL9.1
#=GS A1BM55_9GAMA/1-143       AC A1BM55.1
#=GS A0A0M4M4J5_9GAMA/1-140   AC A0A0M4M4J5.1
#=GS Q99CX7_BHV4/1-130        AC Q99CX7.1
#=GS A0A0R5Z2P9_9GAMA/1-145   AC A0A0R5Z2P9.1
#=GS SCP_ALHV1/1-165          AC O36415.1
#=GS A0A120HQI7_9GAMA/22-135  AC A0A120HQI7.1
#=GS Q53CT7_9GAMA/1-169       AC Q53CT7.1
#=GS A0A0B4Q640_9GAMA/19-175  AC A0A0B4Q640.1
#=GS Q77NH9_9GAMA/1-169       AC Q77NH9.1
#=GS SCP_SHV21/1-105          AC Q01047.1
#=GS A0A1Z1NE41_9GAMA/1-128   AC A0A1Z1NE41.1
#=GS Q9WRM9_9GAMA/1-169       AC Q9WRM9.1
#=GS SCP_EHV2/15-178          AC Q66667.1
#=GS SCP_HHV8P/1-170          AC Q2HR63.1
#=GS A0A2Z5U664_9GAMA/23-136  AC A0A2Z5U664.1
#=GS SCP_EBVB9/1-169          AC P14348.1
#=GS A0A060D3T3_9GAMA/4-191   AC A0A060D3T3.1
#=GS U5NIZ5_HHV8/1-187        AC U5NIZ5.1
#=GS A0A1P7U1A6_EBVA8/1-172   AC A0A1P7U1A6.1
A0A2D0ZPL9_9GAMA/5-83               aehylv-------FPVVQGRLDNDFPGHPLV.QHLNNMQQ.GVLNDEQFVLAKQSFLTFLIAQAAYDGYLDRNAGIRRNVH-----.--------------.........-----------..--------------...------...-..---..............-----------------.-------------------------dysslpg................................................................................................
A1BM55_9GAMA/1-143                  ......MSYARPRLPRIHVRLEQDYPHDPRV.QQLQVQVL.NNPNYANNVRAPYTYLVFLTAQQTYDAYVRQARGVNKKKLPPSN-.--KPPPQPNNQPNN.........QQA-NNLPPVP..PHPSGAGSGGG---...------...-..---..............-----------------.-------------------------ppnapplpdkpdpqqgggannqsqgsgggnplp......................................................................
A0A0M4M4J5_9GAMA/1-140              ......MSREQLRDPIIQDKLEDLNIQQHLI.KQVQALPK.SNKTDQEYAKAQRLYLTFLLTQQFFDNITNQNLGVRRKKHIEAYR.--KLQQGSQQIPQ-.........----SIS-SSP..FVQAAIYNGEPPKS...-----T...G..SSI..............STLFSEDHSTESG----.-------------------------dlvakrttsgskk..........................................................................................
Q99CX7_BHV4/1-130                   ......MSQHRLRTPMIQGRLENDYPNNPLI.ATMTALPQ.NNMTSDQYAEVQRNYLVFLIAQQCYDRYLASKTGIRRKHHLQQLLsHTQPP-NSSIFSSL.........SSQASAPTAPP..PSDTD---------...------...-..---..............-----------------.-------------------------lsqtdsrpgsllsstpkrsskk.................................................................................
A0A0R5Z2P9_9GAMA/1-145              ......MSGAALKDPIVQDRLEDSTAN-PSVtQQLQKLPR.GTRNDQDFAKIQKLYLTFLLSRQHYDEITNKNLGVRRKKHLEAKK.--------QTGQGS.........QPISAQSLAQP..--------------...------...-..---..............-----------------.-------------------------tqpsissslfsldasrvpasmessivvlpgeepstesaellstkrtssgk.....................................................
SCP_ALHV1/1-165                     ......MAHARPKLPRINLRLDAEYPNDPRV.QQLHLQIL.NNPNYANNVRAPLSYLVFLTAQEMYEVFVRQARGVNKKRSGG---.PEKPILPANPGAG-.........-----------..PQNAPGCGGGGSGS...GGSGPP...G..GSApqiqp...pnngvpSNQVSSNSGSAAGSGSG.SGASSNSGAGSGAGAGSSACPSSG-a......................................................................................................
A0A120HQI7_9GAMA/22-135             ..tfpm-----LKLPIIQSKLEQIDASGETA.AKLAKIDI.KDADEEVLERHRQLFLCYLIASSIYEKSSSEKLGIRRNIHLGTLE.ERKIN---------.........-----------..--------------...------...-..---..............-----------------.-------------------------kkrmeiekeslfgsvstddsfsitngneskks.......................................................................
Q53CT7_9GAMA/1-169                  ......MSSLRVKEPIVQGRLEHDYPNHPLV.AEMNNLPQ.GDMSPAQYAIAKRNYLVFLTAKHHYDMYTQKKNGILRKDHLRGLR.-----GKKDASSSI.........SSVLSGSGSAA..PSVAPVASTLGSNSfttISSGPH...SliGSI.............gPTPGGGGPGSVASSGIG.STSLSPSDATTLDTRRSS-------qnkksk.................................................................................................
A0A0B4Q640_9GAMA/19-175             ....eg--YQPLKMPVVQGKLEDLDSNGFIA.REAAALEK.KNRSDEEFEKVKMLYVIFLKVSEIYDDHARVRLGLRRKPHMAGLA.-----SHGGKSSG-.........--GVASS--VS..-SSGSGS-----SS...GSSSTS...F..GSFqg..........llTAAE--PVDSAAAGGGGgGASGSSADAAQQK-AKQQ-------tqsapktrk..............................................................................................
Q77NH9_9GAMA/1-169                  ......MSSLRVKEPIVQGRLEHDYPNHPLV.AEMNNLPQ.GDMSPAQYAIAKRNYLVFLTAKHHYDMYMQKKNGILRKDHLRGLR.-----GKKDASSSI.........SGVLSGSGSAA..PSVAPVASTLGSNSfttISSGPHsliG..SMG..............PAPGGGGPGSVASSGIG.STSLSPSDATTLDTRRSS-------qnkksk.................................................................................................
SCP_SHV21/1-105                     ......MHRLRVTDPVVQGKLEESDSTHELV.KRLEILPQ.NNMTPEEYTLMKRNYLVFLIAQYNFDQYIETTHGIKRKKHIEGLKaNLKPSALSADSASL.........SGLLSTSLTTP..--------------...------...-..---..............-----------------.-------------------------s......................................................................................................
A0A1Z1NE41_9GAMA/1-128              ..matg-----LKLPIVQHRLEHDYPNSSLV.QMLQTLDHeKDVTNEEFAVAQKHYLVFLTCQMLYNKYLVAQNGVRRRNHIQNLI.GKQA--TVEGFGGL.........AAADGTS--VP.kTRPAGNDA------...------...-..---..............-----------------.-------------------------klassqgapaaigaapacdl...................................................................................
Q9WRM9_9GAMA/1-169                  ......MSSLRVKEPIVQGRLEHDYPNHPLV.AEMNNLPQ.GDMSPAQYAIAKRNYLVFLTAKHHYDMYMQKKNGILRKDHLRGLR.-----GKKDASSSI.........SGVLSGSGSAA..PSVAPVASTLGSNSfttISSGPHsliG..SMG..............PAPGGGGPGSVASSGIG.STSLSPSDATTLDTRRSS-------qnkksk.................................................................................................
SCP_EHV2/15-178                     ....eg--YQPLRLPRVQGKLEE---INPIVaAEVAALER.RDRSDADYEKVKMLYVIYLRVHEIYDDQARIRLGVRRKKHLGDLT.-------ASRGAGL.........RSFEALSSMIPlpPETGEFDTGGTSSSv.rSASGAS...G..GAA..............STAASGGSASAAASGAS.GGSASQSDVSSRS-RSQQAPGTKGKk......................................................................................................
SCP_HHV8P/1-170                     ......MSNFKVRDPVIQERLDHDYAHHPLV.ARMNTLDQ.GNMSQAEYLVQKRHYLVFLIAHHYYEAYLRRMGGIQRRDHLQTLR.DQKPRERADRVSAA.........SAYDAGTFTVPsrPGPASGTTPGGQDS...--LGVS...G..SSI..............TTLSSGPHSLSPASDIL.TTLSSTTETAAPAVADARKPPSGKKk......................................................................................................
A0A2Z5U664_9GAMA/23-136             ....gv-----LKMPDVQDKLEDSDSNPEVA.KQLKNFQK.SSLNNEQLEQAKKLYVCYLRAQEIYEEQAQKRLGIRRKKHLADVS.---KAGHSGPGGSL.........PS-SIFSSTTP..-TSASFTVLPSDSS...------...-..---..............-----------------.-------------------------sdlas..................................................................................................
SCP_EBVB9/1-169                     ...mar----RLPKPTLQGRLEADFPDSPLL.PKFQELNQ.NNLPNDVFREAQRSYLVFLTSQFCYEEYVQRTFGVPRRQRAID--.--KRQRASVAGAGA.........HAHLGGSSATP..VQQAQAAASAGTGA...LASSAP...S..TA-..............VAQSATPSVSSSISSLR.AATSGATAAASAAAA----------vdtgsggggqphdtap.......................................................................................
A0A060D3T3_9GAMA/4-191              ...sqf---VRLEMPEVQNRIEADFPQNEKV.VEMQTLLQ.NNPNFNLDNRTSKTYLVFLTAQENFEAFMNQARGIDRKLKGCNNN.QKQPQQQ-------.........-----------..--------------...------...-..---..............-----------------.-------------------------lqqqqqpsqqqqppapsqqdnnagnsnrckpsflpsapplpdnqqllgkggnkdskvyslgsldklpshinltladpsvagipipsdddssgsdygangqpvi
U5NIZ5_HHV8/1-187                   ......MAGFRVRDPLVQERLDQDYAQHPLV.IRMNTLDQ.GSMSDAQYLTQKRNYLVFLIAHHHYEAYLRQREGIQRRDHLQNLR.AQKLPDRAGRGPGLglsslagapASLDSGAQVTP..PVSLSSGVPASLVS...TAP---...-..--AataasvkgsnaeiiTTLTSAGSHVSSAPASA.TPQPTAVDSAASTAQDGRKT-----ltakrk.................................................................................................
A0A1P7U1A6_EBVA8/1-172              ...mar----RLPKPTLQGRLEADFPDSPLL.PKFQELNQ.NNLPNDVFREAQRSYLVFLTSQFCYEEYVQRTFGVPRRQRAID--.--KRQRASVAGAGA.........HAHLGGSSATP..VQQAQAAASAGTGA...LASSAP...S..TAV..............-AQSATPSVSSSISSLR.AATSGATAAASAAAA----------vdtgsggggqpqdtaprga....................................................................................
#=GC seq_cons                       ..........+l+hPlVQsRLEpDasspPLV.tchpsLsp.sshssspaspsp+sYLVFLpApptY-tYhppptGlpRKcHltslp...p..ttsstuuuh.........tuh.usS.ssP..spsushss..s..u...........................................................................ppttpt.................................................................................................
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