GenomeNet

Database: Pfam
Entry: Hfx_Cass5
LinkDB: Hfx_Cass5
Original site: Hfx_Cass5 
#=GF ID   Hfx_Cass5
#=GF AC   PF18287.2
#=GF DE   Integron Cassette Protein Hfx_Cass5
#=GF AU   Smart A;0000-0002-6965-5633
#=GF SE   ECOD:EUF03202
#=GF GA   25.00 25.00;
#=GF TC   35.20 55.90;
#=GF NC   24.00 16.60;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   23349695
#=GF RT   Integron gene cassettes: a repository of novel protein folds
#=GF RT   with distinct interaction sites.
#=GF RA   Sureshan V, Deshpande CN, Boucher Y, Koenig JE, Stokes HW,
#=GF RA   Harrop SJ, Curmi PM, Mabbutt BC;
#=GF RL   PLoS One. 2013;8:e52934.
#=GF DR   INTERPRO; IPR041376;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This domain forms part of the integron cassette protein
#=GF CC   Hfx_CASS5 present in Vibrio cholerae. The structure of Hfx is a
#=GF CC   tetramer built from two domain-swapped dimers [1].
#=GF SQ   17
#=GS A0A3B0C8I8_9FLAO/1-58   AC A0A3B0C8I8.1
#=GS A6E8N2_9SPHI/2-65       AC A6E8N2.1
#=GS A0A395JEE5_9GAMM/4-83   AC A0A395JEE5.1
#=GS V5BEQ7_9GAMM/4-80       AC V5BEQ7.1
#=GS A0A1I5B3A9_9FLAO/4-80   AC A0A1I5B3A9.1
#=GS A0A2K8XAA9_9FLAO/6-82   AC A0A2K8XAA9.1
#=GS A0A495RXM8_SPHMI/4-80   AC A0A495RXM8.1
#=GS A0A2R7LA06_9CAUL/4-79   AC A0A2R7LA06.1
#=GS A0A3S2UMZ1_9SPHI/4-80   AC A0A3S2UMZ1.1
#=GS A0A2S4ZZF9_9SPHI/4-80   AC A0A2S4ZZF9.1
#=GS A0A1G7F744_9BACT/11-86  AC A0A1G7F744.1
#=GS A0A2R7JZE4_9SPHN/6-90   AC A0A2R7JZE4.1
#=GS A0A2S5TR31_9RHIZ/4-79   AC A0A2S5TR31.1
#=GS A0A2T6EAN1_9GAMM/4-83   AC A0A2T6EAN1.1
#=GS A0A369QAG6_9BACT/4-80   AC A0A369QAG6.1
#=GS A3QG70_SHELP/2-80       AC A3QG70.1
#=GS A0A2P8C5U3_9BACT/13-89  AC A0A2P8C5U3.1
A0A3B0C8I8_9FLAO/1-58              ....mk------------------------KFTLVYRTAKQVHWNQEKQTVYSPKPTD........WTYVDWYNHILK.VVKEeCFCELYLTD--dt..
A6E8N2_9SPHI/2-65                  lvyiid----------------------KERFTLIYRIAIEVHWDNNVLFLYSPKPRE........WTYFNWFRHITG.VAETgCNCKLVLTDQT....
A0A395JEE5_9GAMM/4-83              ......EEISKIEILENGEMFVMLASGGNPMYQYIYREAAEVYWDNEAKVFKAPAPRK........WTHTDWFKKIIS.VAASgLGITLELSNST....
V5BEQ7_9GAMM/4-80                  ......DNIAIIGIDESKRLYV---TPMREEFPYIYRAAMQVNWDDNGKCLYSPVPSE........WTYLQWFQQIIA.AANSeYGVSLAISHGT....
A0A1I5B3A9_9FLAO/4-80              ......DKILEIGIDDKERLFV---KPKTEIFEFIYRDASGVNWDINGQFLYSPKPTE........MNYFDWFRQIIL.ATKGeYGCELKITSET....
A0A2K8XAA9_9FLAO/6-82              ......DTIIQIEIDDSGKLHI---KPEYEKFIMIYRTATEVHWNTENNTLYSPTPRD........RTYLEWFEQIIK.VVKEeCSCDLYITEQT....
A0A495RXM8_SPHMI/4-80              ......DAISEVGISEDGGLYV---RPSSTTFEYIWRAAVEVHWDLQNRRLFGPKPRE........WTYVDWFKQIVAaVADE.YGILLRLTPQT....
A0A2R7LA06_9CAUL/4-79              ......DSIKEIGIDAEGRLYI---EPRSSTFPFVYLEAMQVGWDSDLRRLFSPKPTE........WSYVDWFRQLTE.AAVL.QGVRLRLSG--st..
A0A3S2UMZ1_9SPHI/4-80              ......DHIEAIGINEQGQLYV---KPCKKQFTLIWRSATQVHWNDTGSYLYSPKPTE........WSYMDWYKHIVT.VIADeYNCKLLVVNDT....
A0A2S4ZZF9_9SPHI/4-80              ......DKILEIGIDDKERLFI---KPEKERFTLIYRTATEVHWDNNGLFLYSPKPQG........WSYFDWFRHITG.VTETeCNYKLLLTNKT....
A0A1G7F744_9BACT/11-86             ......DRIEAIGIDANGSLWV---KPATKTFPMMYREGMEVHWDASRQCLYSPLPRE........WSYLQWFCQINR.AAAE.QGVALVVDSQT....
A0A2R7JZE4_9SPHN/6-90              ......EVIAEIGISEDGGLYV---RPTTTGFNYIYRAAMQIGWDANQRHLTSPAPKNaafpnwhtWTYSDWLRQILA.AVNDeYGIALVQ----tptt
A0A2S5TR31_9RHIZ/4-79              ......DTIEAVGIDDRGSLWV---KPTTATFPFIYREAMEVRWDADRLRLYGPKPRE........WPYVAWFKQIRV.AARE.HGVELKL----gptt
A0A2T6EAN1_9GAMM/4-83              ......EEISKIEILENGEMYLVLSSGGKEEYHNIYREAAEVYWDRERKAFKAPTPRK........WSHVDWYKHIVS.VAASgLRLSLQVSDNT....
A0A369QAG6_9BACT/4-80              ......DNIQEIGINQNGQLFI---KPDKRKFPLIYRTATEVHWDSNKNILYSPKPRE........WTYLDWFRHIIT.TLETeCDCKLQITP--et..
A3QG70_SHELP/2-80                  ......ELIERVEVLENGQLILVLASGGNSSYQYIYREAAEVKWDSNLKAFTSPPPRE........WSHSDWFHHILK.VAKN.CNINLATNNQT....
A0A2P8C5U3_9BACT/13-89             ......DNIKSIEIDREGKLHV--VTDM-TTYPMIYRTATEVHWDVDKHSLYSPKPRE........WSYIKWYNHILD.VCETeCSCRLLL----taet
#=GC seq_cons                      ......DpItpItIs-pGpLal...pPtpppFshIYRpAhEV+WDsstptLYSPpP+E........WoYhDWF+pIls.sspsthsspLhlostT....
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