GenomeNet

Database: Pfam
Entry: Lipoprotein_6
LinkDB: Lipoprotein_6
Original site: Lipoprotein_6 
#=GF ID   Lipoprotein_6
#=GF AC   PF01441.20
#=GF DE   Lipoprotein
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF SE   Prodom_1149 (release 99.1)
#=GF GA   27.80 27.80;
#=GF TC   28.00 73.40;
#=GF NC   25.40 27.70;
#=GF BM   hmmbuild --amino HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RC   This family is discussed briefly on page 585.
#=GF RN   [1]
#=GF RM   9403685
#=GF RT   Genomic sequence of a Lyme disease spirochaete, Borrelia
#=GF RT   burgdorferi. 
#=GF RA   Fraser CM, Casjens S, Huang WM, Sutton GG, Clayton R, Lathigra
#=GF RA   R, White O, Ketchum KA, Dodson R, Hickey EK, Gwinn M, Dougherty
#=GF RA   B, Tomb JF, Fleischmann RD, Richardson D, Peterson J, Kerlavage
#=GF RA   AR, Quackenbush J, Salzberg S, Hanson M, van Vugt R, Palmer N, A
#=GF RL   Nature. 1997;390:580-586.
#=GF DR   INTERPRO; IPR001800;
#=GF DR   HOMSTRAD; Lipoprotein_6;
#=GF DR   SCOP; 1ggq; fa;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   Members of this family are lipoproteins that are probably
#=GF CC   involved in evasion of the host immune system by pathogens.
#=GF SQ   22
#=GS W6TFY7_9SPIR/47-216      AC W6TFY7.1
#=GS W6TER1_9SPIR/1-102       AC W6TER1.1
#=GS W6TF11_9SPIR/31-200      AC W6TF11.1
#=GS W6TEQ5_9SPIR/1-145       AC W6TEQ5.1
#=GS W6TG21_9SPIR/2-120       AC W6TG21.1
#=GS W6TER4_9SPIR/2-158       AC W6TER4.1
#=GS W6TGQ2_9SPIR/58-227      AC W6TGQ2.1
#=GS W6TFP7_9SPIR/68-238      AC W6TFP7.1
#=GS W6TWU4_9SPIR/58-227      AC W6TWU4.1
#=GS W6TX59_9SPIR/1-94        AC W6TX59.1
#=GS W6TFQ3_9SPIR/1-101       AC W6TFQ3.1
#=GS A0A1L8ZAE0_BORBI/38-207  AC A0A1L8ZAE0.1
#=GS W6TGT2_9SPIR/1-74        AC W6TGT2.1
#=GS OSPC_BORBU/37-204        AC Q07337.1
#=GS OSPC_BORBU/37-204        DR PDB; 1GGQ C; 39-200;
#=GS OSPC_BORBU/37-204        DR PDB; 1GGQ D; 40-201;
#=GS OSPC_BORBU/37-204        DR PDB; 1GGQ B; 40-201;
#=GS OSPC_BORBU/37-204        DR PDB; 1GGQ A; 39-200;
#=GS W6TIX8_9SPIR/1-88        AC W6TIX8.1
#=GS W6TFV0_9SPIR/25-195      AC W6TFV0.1
#=GS A0A1L8ZAD7_BORBI/38-206  AC A0A1L8ZAD7.1
#=GS W6TJ31_9SPIR/1-161       AC W6TJ31.1
#=GS W6TG18_9SPIR/26-195      AC W6TG18.1
#=GS W6TGG2_9SPIR/44-214      AC W6TGG2.1
#=GS W6TVR8_9SPIR/1-69        AC W6TVR8.1
#=GS W6TFN6_9SPIR/44-112      AC W6TFN6.1
W6TFY7_9SPIR/47-216                 ....VIDLKGVSNKIKDAVEFAQGVKEVHTLVKSIDEL.AKAIGKKIKND.GGL...DTE...AGKNGTLVAGVFSVALDVQTKLVALEAKT.-SDNELKK....QIVDVKTKGNAFIDKMKSKHNDLGKQDsaVTDNDAKAAIDRSN-.SGDKGATELSALNVSIDGLLKTVNEVLKTVISELLTSDK-k....
W6TER1_9SPIR/1-102                  ...m----------------------------------.-----------.---...---...------------------DTKLATLLGKA.ELSSDLST....KVNDAKVKSTAFLNTLKSSTTEFDKEG..ASDADSKKALFKDNA.DKTKGRDELDKLNTSIDILMASFKKELDDSIKKLIEEP--vr...
W6TF11_9SPIR/31-200                 ....VIDLKVVSKKIKDAVKFAEKVKEVHTLVKSVDEL.AKAIGKKIDAN.GSL...ADE...ADHNGSLLAGVHSVISAVNTKLKGLETTD.NISDELKG....KIVAVGKEGKAFLDKLKEKNAALGKEG..AKDTDAKSAIDVTAN.TKDKGATELAKLNGTINELLNASNKIVSDVIAELVVKPT-i....
W6TEQ5_9SPIR/1-145                  ....-------------------------VLVKSVDEL.AKAIGKKIKND.GGL...DTE...AGKNGSLLAGVHSVISVVKAKVELLEKTS.GISNDLKT....KVTEVRNKVDAFLTKLKDNHSDLGKHD..VSDDDAKKAILVSNG.DKSKGATELTQLNSSIDELLTASNKMVSDAISELVVKPT-a....
W6TG21_9SPIR/2-120                  ..vv----------------------------------.-----------.---...---...--HTGPLVSGSYQIITSVNTKLKALELEA.EKFDGMKA....KILAAKTLGEGFLTKLKTAHSDIAKND..AQDTDVKKALVKDNG.DKTKRAEELGKLNTAINDLVNSAKELAENTIKKFTASTKK.....
W6TER4_9SPIR/2-158                  ..rw---------------EFAGKVKEVHTLVKSVDEL.AKAIGKKIKDD.GSL...DAE...ADHNGSLIAGVFQLIVDAKVKLDALEQTV.GISNEMKG....KVSDVKTKAEAFSKKLKDNHTDLGKKD..ATDANAKKAIDIADA.TKDKGATELIALNTAIDGLLKGVEVAVASAIKELTTPPV-n....
W6TGQ2_9SPIR/58-227                 ....VIDLKVVSKKIKDAVKFAEKVKEVHTLVKSVDEL.AKAIGKKIDAN.GSL...ADE...ADHNGSLLAGVHSVISAVNTKLKGLETTD.NISDELKG....KIVAVGKEGKAFLDKLKEKNAALGKEG..AKDTDAKSAIDVTAN.TKDKGATELAKLNGTINELLNASNKIVSDVIAELVVKPT-i....
W6TFP7_9SPIR/68-238                 ....VIDLKVVGDKIKSAVEFAGKVKEVETLVKSVDEL.AKAIGKKIHND.GSL...TTE...SGKNGSLLAGAHSIISAIKTKLEALEQKAiDQFAAMKA....QVITAKTASTDLLNKFKDKNAELGKNE..ATDDDAKAAILISNG.TKDKGVDELVKLNTAITNLLTSAKDELDSAISKLTAKPV-k....
W6TWU4_9SPIR/58-227                 ....VIDLKVVSEQIKETTAFLVGLKEVHVLVLSINDL.AKVIGKKIDAN.GSL...VDD...ANHNGPLVSGSYQIITSVNTKLKALESEA.EKFDGMKA....RILAAKTLGEGFLTKLKTAHSDIAKND..AQDTDVKKALVKDNG.DKTKGAEELGKLNTAINDLVNTAKELAENTIKKLTASTKK.....
W6TX59_9SPIR/1-94                   ..mg----------------------------------.-----------.---...---...--------------------------KKD.GNSFELKT....KFDDVNKKCKAFLDKVKG-DSDLCKKD..VTDENAQKALDTNNA.TKDKGASELVALNTSIDGLLKSVTDMIEASIGELTVKP--iv...
W6TFQ3_9SPIR/1-101                  ...m------------------------HVLVKSVDEL.AKAIGKKIKQNfEEL...DVDngkNNKNGELVAGVFQVMLTVKSKLEELWNTP.EISDELKG....KVAGSKNKCKEFVDKIKA-DSDIAKAE..VTDEH----------.----------------------------------------l....
A0A1L8ZAE0_BORBI/38-207             vkgp--NLTEISKKITDSNAVVLAVKEVETLLTSIDQLaTKAIGKKIDQN.NGL...ADE...QDKNSSLLAGAYAISTLITEKLSVLNSEG.-----LKD....KIEKAKKCSEEFTKKLKESHVELAPANggATSENAKKAILKTNG.TKDKGADELEKLFESVKNLAKAAKEMLNNSVKELTSPV--va...
W6TGT2_9SPIR/1-74                   ...m---------------EFVTSVKEVHALVRSVGEF.AKAIGKKVTQN.TGViaaDAG...GNNNGGLIAGAYSLISELNTKVKHWEKKM.E-------....---------------------------..---------------.----------------------------------------illn.
OSPC_BORBU/37-204                   vkgp--NLTEISKKITDSNAVLLAVKEVEALLSSIDEIaAKAIGKKIHQN.NGL...DTE...NNHNGSLLAGAYAISTLIKQKLDGLKNEG.-----LKE....KIDAAKKCSETFTNKLKEKHTDLGKEG..VTDADAKEAILKTNG.TKTKGAEELGKLFESVEVLSKAAKEMLANSVKELTSPV--va...
#=GR OSPC_BORBU/37-204        SS    XX-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEETT.TEE...EE-...-S--HHHHHHHHHHHHHHHHHHHT---TT.-----THH....HHHHHHHHHHHHHHHHHHTHHHHSSS-..--HHHHHHHH-TTSS.--TTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC-XX--XX...
W6TIX8_9SPIR/1-88                   ...v----------------------------------.-----------.---...---...-----------------------------.----EFKA....KVTGVKDKCTVLVNKLKGGHAELGIEG..ATDENVQKAIDRTNKpNGDKGVAELIALNTAINELLKASNKIVSDAITELVVTPT-t....
W6TFV0_9SPIR/25-195                 ....VVDLKVVSKKIRDAVEFAGRVKEVETLVKSVDEL.AKAIGKKIKDD.GSL...DAE...ANHNGSLIAGAFQVILTVETKLKELEKQD.ELSVEFKA....KVTGVKDRCTVLVNKLKGGHAELGIEG..ATDENVQKAIDRTNKpNGDKGVAELIALNTAINELLKASNKIVSDVIAELVVTPT-t....
A0A1L8ZAD7_BORBI/38-206             vkgp--NLTEISKKITDSNAIVLAVKEVETLLLSIDEL.AKAIGKKINN-.NGL...DAL...QNFNASLLGGAHTISKLITEKLSKLNGSE.----ELKE....KIEAAKKCSDDFTKKLQSSHAELGVAGgaTTDENAKKAILKSNA.DKTKGADELGKLFESVESLSKAAKDKLNNSVKELTSPV--va...
W6TJ31_9SPIR/1-161                  ...m--------------VEFLGKVKEVHTLVKSIDEL.AKAIGKKIKNDdDGF...DDE...ADKNGSLIAGVFSIVRAVGDGLSKLDTSN.-ISGNFKAtissTINNAKTKSEAFLAKLKGQDANLGKND..ASSNDVKAAILKSNA.TKDKGLEELIALNTAIDALLKSATDMVEASIGELTVKS--iv...
W6TG18_9SPIR/26-195                 ....VIDLKVVSKKIKDAVEFLGKVKEVHVLVKSVDEL.AKAIGKKIKND.GGL...DTE...AGKNGSLLAGVHSVISALKAKVELLEKTS.GIFNDLKT....KVTEVRNKVDAFLTKLKENHSDLGKHD..AADDDAKKAILVSNG.DKSKGATELTQLNSSIDELLTASNKIVSDSIAELVVKPT-a....
W6TGG2_9SPIR/44-214                 ....VIDLKVIGEKIKSAVEFAGKVKEVHTLVKSIDVL.AKGIGKKIKNA.DEL...DTV...ADKNGTLVAAVFNLMLEIKTKLTNLETGT.DKFNGMKV....KVIAAKSECEKFIATVKSKNTDLGKDG..VTDTHAQEVMDIISKpSGDKGASDLVKLNTEIEKLLTAAHELTRDTINELIMPAH-e....
W6TVR8_9SPIR/1-69                   ...m------------------GKVKEVHTLVKSVDEL.AKAIGKKIENDdDGF...DDE...ADKNGSLIAGVFSIVRAVGDGLSKLDTSN.--------....---------------------------..---------------.----------------------------------------isekl
W6TFN6_9SPIR/44-112                 ....VIDLKVVSNKIRYAVEFAESVKEVHTLVKSVDEL.AKAIGKKVGAV.-GL...GDI...VDHNRSLIAGAYSVID-------------.--------....---------------------------..---------------.----------------------------------------scg..
#=GC SS_cons                        XX-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEETT.TEE...EE-...-S--HHHHHHHHHHHHHHHHHHHT---TT.-----THH....HHHHHHHHHHHHHHHHHHTHHHHSSS-..--HHHHHHHH-TTSS.--TTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC-XX--XX...
#=GC seq_cons                       ...................thh.tVKEVcsLV+SlDEL.AKAIGKKIcss.suL...ss-...ss+NGoLlAGsaslhptlpsKLptL-pps.t..sthKs....Kl.ssKppscsFlsKLKstcs-LuKps..soDpssKpAl.hsNs.sKsKGssELhtLNsuIstLlpuupchlpssItELss.s..h....
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