#=GF ID Lipoprotein_6
#=GF AC PF01441.20
#=GF DE Lipoprotein
#=GF AU Bateman A;0000-0002-6982-4660
#=GF SE Prodom_1149 (release 99.1)
#=GF GA 27.80 27.80;
#=GF TC 28.00 73.40;
#=GF NC 25.40 27.70;
#=GF BM hmmbuild --amino HMM.ann SEED.ann
#=GF SM hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP Family
#=GF RC This family is discussed briefly on page 585.
#=GF RN [1]
#=GF RM 9403685
#=GF RT Genomic sequence of a Lyme disease spirochaete, Borrelia
#=GF RT burgdorferi.
#=GF RA Fraser CM, Casjens S, Huang WM, Sutton GG, Clayton R, Lathigra
#=GF RA R, White O, Ketchum KA, Dodson R, Hickey EK, Gwinn M, Dougherty
#=GF RA B, Tomb JF, Fleischmann RD, Richardson D, Peterson J, Kerlavage
#=GF RA AR, Quackenbush J, Salzberg S, Hanson M, van Vugt R, Palmer N, A
#=GF RL Nature. 1997;390:580-586.
#=GF DR INTERPRO; IPR001800;
#=GF DR HOMSTRAD; Lipoprotein_6;
#=GF DR SCOP; 1ggq; fa;
#=GF DR SO; 0100021; polypeptide_conserved_region;
#=GF CC Members of this family are lipoproteins that are probably
#=GF CC involved in evasion of the host immune system by pathogens.
#=GF SQ 22
#=GS W6TFY7_9SPIR/47-216 AC W6TFY7.1
#=GS W6TER1_9SPIR/1-102 AC W6TER1.1
#=GS W6TF11_9SPIR/31-200 AC W6TF11.1
#=GS W6TEQ5_9SPIR/1-145 AC W6TEQ5.1
#=GS W6TG21_9SPIR/2-120 AC W6TG21.1
#=GS W6TER4_9SPIR/2-158 AC W6TER4.1
#=GS W6TGQ2_9SPIR/58-227 AC W6TGQ2.1
#=GS W6TFP7_9SPIR/68-238 AC W6TFP7.1
#=GS W6TWU4_9SPIR/58-227 AC W6TWU4.1
#=GS W6TX59_9SPIR/1-94 AC W6TX59.1
#=GS W6TFQ3_9SPIR/1-101 AC W6TFQ3.1
#=GS A0A1L8ZAE0_BORBI/38-207 AC A0A1L8ZAE0.1
#=GS W6TGT2_9SPIR/1-74 AC W6TGT2.1
#=GS OSPC_BORBU/37-204 AC Q07337.1
#=GS OSPC_BORBU/37-204 DR PDB; 1GGQ C; 39-200;
#=GS OSPC_BORBU/37-204 DR PDB; 1GGQ D; 40-201;
#=GS OSPC_BORBU/37-204 DR PDB; 1GGQ B; 40-201;
#=GS OSPC_BORBU/37-204 DR PDB; 1GGQ A; 39-200;
#=GS W6TIX8_9SPIR/1-88 AC W6TIX8.1
#=GS W6TFV0_9SPIR/25-195 AC W6TFV0.1
#=GS A0A1L8ZAD7_BORBI/38-206 AC A0A1L8ZAD7.1
#=GS W6TJ31_9SPIR/1-161 AC W6TJ31.1
#=GS W6TG18_9SPIR/26-195 AC W6TG18.1
#=GS W6TGG2_9SPIR/44-214 AC W6TGG2.1
#=GS W6TVR8_9SPIR/1-69 AC W6TVR8.1
#=GS W6TFN6_9SPIR/44-112 AC W6TFN6.1
W6TFY7_9SPIR/47-216 ....VIDLKGVSNKIKDAVEFAQGVKEVHTLVKSIDEL.AKAIGKKIKND.GGL...DTE...AGKNGTLVAGVFSVALDVQTKLVALEAKT.-SDNELKK....QIVDVKTKGNAFIDKMKSKHNDLGKQDsaVTDNDAKAAIDRSN-.SGDKGATELSALNVSIDGLLKTVNEVLKTVISELLTSDK-k....
W6TER1_9SPIR/1-102 ...m----------------------------------.-----------.---...---...------------------DTKLATLLGKA.ELSSDLST....KVNDAKVKSTAFLNTLKSSTTEFDKEG..ASDADSKKALFKDNA.DKTKGRDELDKLNTSIDILMASFKKELDDSIKKLIEEP--vr...
W6TF11_9SPIR/31-200 ....VIDLKVVSKKIKDAVKFAEKVKEVHTLVKSVDEL.AKAIGKKIDAN.GSL...ADE...ADHNGSLLAGVHSVISAVNTKLKGLETTD.NISDELKG....KIVAVGKEGKAFLDKLKEKNAALGKEG..AKDTDAKSAIDVTAN.TKDKGATELAKLNGTINELLNASNKIVSDVIAELVVKPT-i....
W6TEQ5_9SPIR/1-145 ....-------------------------VLVKSVDEL.AKAIGKKIKND.GGL...DTE...AGKNGSLLAGVHSVISVVKAKVELLEKTS.GISNDLKT....KVTEVRNKVDAFLTKLKDNHSDLGKHD..VSDDDAKKAILVSNG.DKSKGATELTQLNSSIDELLTASNKMVSDAISELVVKPT-a....
W6TG21_9SPIR/2-120 ..vv----------------------------------.-----------.---...---...--HTGPLVSGSYQIITSVNTKLKALELEA.EKFDGMKA....KILAAKTLGEGFLTKLKTAHSDIAKND..AQDTDVKKALVKDNG.DKTKRAEELGKLNTAINDLVNSAKELAENTIKKFTASTKK.....
W6TER4_9SPIR/2-158 ..rw---------------EFAGKVKEVHTLVKSVDEL.AKAIGKKIKDD.GSL...DAE...ADHNGSLIAGVFQLIVDAKVKLDALEQTV.GISNEMKG....KVSDVKTKAEAFSKKLKDNHTDLGKKD..ATDANAKKAIDIADA.TKDKGATELIALNTAIDGLLKGVEVAVASAIKELTTPPV-n....
W6TGQ2_9SPIR/58-227 ....VIDLKVVSKKIKDAVKFAEKVKEVHTLVKSVDEL.AKAIGKKIDAN.GSL...ADE...ADHNGSLLAGVHSVISAVNTKLKGLETTD.NISDELKG....KIVAVGKEGKAFLDKLKEKNAALGKEG..AKDTDAKSAIDVTAN.TKDKGATELAKLNGTINELLNASNKIVSDVIAELVVKPT-i....
W6TFP7_9SPIR/68-238 ....VIDLKVVGDKIKSAVEFAGKVKEVETLVKSVDEL.AKAIGKKIHND.GSL...TTE...SGKNGSLLAGAHSIISAIKTKLEALEQKAiDQFAAMKA....QVITAKTASTDLLNKFKDKNAELGKNE..ATDDDAKAAILISNG.TKDKGVDELVKLNTAITNLLTSAKDELDSAISKLTAKPV-k....
W6TWU4_9SPIR/58-227 ....VIDLKVVSEQIKETTAFLVGLKEVHVLVLSINDL.AKVIGKKIDAN.GSL...VDD...ANHNGPLVSGSYQIITSVNTKLKALESEA.EKFDGMKA....RILAAKTLGEGFLTKLKTAHSDIAKND..AQDTDVKKALVKDNG.DKTKGAEELGKLNTAINDLVNTAKELAENTIKKLTASTKK.....
W6TX59_9SPIR/1-94 ..mg----------------------------------.-----------.---...---...--------------------------KKD.GNSFELKT....KFDDVNKKCKAFLDKVKG-DSDLCKKD..VTDENAQKALDTNNA.TKDKGASELVALNTSIDGLLKSVTDMIEASIGELTVKP--iv...
W6TFQ3_9SPIR/1-101 ...m------------------------HVLVKSVDEL.AKAIGKKIKQNfEEL...DVDngkNNKNGELVAGVFQVMLTVKSKLEELWNTP.EISDELKG....KVAGSKNKCKEFVDKIKA-DSDIAKAE..VTDEH----------.----------------------------------------l....
A0A1L8ZAE0_BORBI/38-207 vkgp--NLTEISKKITDSNAVVLAVKEVETLLTSIDQLaTKAIGKKIDQN.NGL...ADE...QDKNSSLLAGAYAISTLITEKLSVLNSEG.-----LKD....KIEKAKKCSEEFTKKLKESHVELAPANggATSENAKKAILKTNG.TKDKGADELEKLFESVKNLAKAAKEMLNNSVKELTSPV--va...
W6TGT2_9SPIR/1-74 ...m---------------EFVTSVKEVHALVRSVGEF.AKAIGKKVTQN.TGViaaDAG...GNNNGGLIAGAYSLISELNTKVKHWEKKM.E-------....---------------------------..---------------.----------------------------------------illn.
OSPC_BORBU/37-204 vkgp--NLTEISKKITDSNAVLLAVKEVEALLSSIDEIaAKAIGKKIHQN.NGL...DTE...NNHNGSLLAGAYAISTLIKQKLDGLKNEG.-----LKE....KIDAAKKCSETFTNKLKEKHTDLGKEG..VTDADAKEAILKTNG.TKTKGAEELGKLFESVEVLSKAAKEMLANSVKELTSPV--va...
#=GR OSPC_BORBU/37-204 SS XX-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEETT.TEE...EE-...-S--HHHHHHHHHHHHHHHHHHHT---TT.-----THH....HHHHHHHHHHHHHHHHHHTHHHHSSS-..--HHHHHHHH-TTSS.--TTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC-XX--XX...
W6TIX8_9SPIR/1-88 ...v----------------------------------.-----------.---...---...-----------------------------.----EFKA....KVTGVKDKCTVLVNKLKGGHAELGIEG..ATDENVQKAIDRTNKpNGDKGVAELIALNTAINELLKASNKIVSDAITELVVTPT-t....
W6TFV0_9SPIR/25-195 ....VVDLKVVSKKIRDAVEFAGRVKEVETLVKSVDEL.AKAIGKKIKDD.GSL...DAE...ANHNGSLIAGAFQVILTVETKLKELEKQD.ELSVEFKA....KVTGVKDRCTVLVNKLKGGHAELGIEG..ATDENVQKAIDRTNKpNGDKGVAELIALNTAINELLKASNKIVSDVIAELVVTPT-t....
A0A1L8ZAD7_BORBI/38-206 vkgp--NLTEISKKITDSNAIVLAVKEVETLLLSIDEL.AKAIGKKINN-.NGL...DAL...QNFNASLLGGAHTISKLITEKLSKLNGSE.----ELKE....KIEAAKKCSDDFTKKLQSSHAELGVAGgaTTDENAKKAILKSNA.DKTKGADELGKLFESVESLSKAAKDKLNNSVKELTSPV--va...
W6TJ31_9SPIR/1-161 ...m--------------VEFLGKVKEVHTLVKSIDEL.AKAIGKKIKNDdDGF...DDE...ADKNGSLIAGVFSIVRAVGDGLSKLDTSN.-ISGNFKAtissTINNAKTKSEAFLAKLKGQDANLGKND..ASSNDVKAAILKSNA.TKDKGLEELIALNTAIDALLKSATDMVEASIGELTVKS--iv...
W6TG18_9SPIR/26-195 ....VIDLKVVSKKIKDAVEFLGKVKEVHVLVKSVDEL.AKAIGKKIKND.GGL...DTE...AGKNGSLLAGVHSVISALKAKVELLEKTS.GIFNDLKT....KVTEVRNKVDAFLTKLKENHSDLGKHD..AADDDAKKAILVSNG.DKSKGATELTQLNSSIDELLTASNKIVSDSIAELVVKPT-a....
W6TGG2_9SPIR/44-214 ....VIDLKVIGEKIKSAVEFAGKVKEVHTLVKSIDVL.AKGIGKKIKNA.DEL...DTV...ADKNGTLVAAVFNLMLEIKTKLTNLETGT.DKFNGMKV....KVIAAKSECEKFIATVKSKNTDLGKDG..VTDTHAQEVMDIISKpSGDKGASDLVKLNTEIEKLLTAAHELTRDTINELIMPAH-e....
W6TVR8_9SPIR/1-69 ...m------------------GKVKEVHTLVKSVDEL.AKAIGKKIENDdDGF...DDE...ADKNGSLIAGVFSIVRAVGDGLSKLDTSN.--------....---------------------------..---------------.----------------------------------------isekl
W6TFN6_9SPIR/44-112 ....VIDLKVVSNKIRYAVEFAESVKEVHTLVKSVDEL.AKAIGKKVGAV.-GL...GDI...VDHNRSLIAGAYSVID-------------.--------....---------------------------..---------------.----------------------------------------scg..
#=GC SS_cons XX-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEETT.TEE...EE-...-S--HHHHHHHHHHHHHHHHHHHT---TT.-----THH....HHHHHHHHHHHHHHHHHHTHHHHSSS-..--HHHHHHHH-TTSS.--TTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC-XX--XX...
#=GC seq_cons ...................thh.tVKEVcsLV+SlDEL.AKAIGKKIcss.suL...ss-...ss+NGoLlAGsaslhptlpsKLptL-pps.t..sthKs....Kl.ssKppscsFlsKLKstcs-LuKps..soDpssKpAl.hsNs.sKsKGssELhtLNsuIstLlpuupchlpssItELss.s..h....
//
