GenomeNet

Database: Pfam
Entry: Lsm_C
LinkDB: Lsm_C
Original site: Lsm_C 
#=GF ID   Lsm_C
#=GF AC   PF14894.10
#=GF DE   Lsm C-terminal
#=GF AU   Eberhardt R;0000-0001-6152-1369
#=GF SE   Jachkhmmer:Q8ZVU2
#=GF GA   27.00 27.00;
#=GF TC   32.30 29.70;
#=GF NC   25.00 20.40;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch --cpu 4 -Z 75585367 -E 1000 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   12668760
#=GF RT   Structure and assembly of an augmented Sm-like archaeal protein
#=GF RT   14-mer.
#=GF RA   Mura C, Phillips M, Kozhukhovsky A, Eisenberg D;
#=GF RL   Proc Natl Acad Sci U S A. 2003;100:4539-4544.
#=GF DR   INTERPRO; IPR028277;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This domain is found at the C-terminus of archaeal Lsm (like-Sm)
#=GF CC   proteins [1].
#=GF SQ   44
#=GS A0A031LLG6_9CREN/79-141   AC A0A031LLG6.1
#=GS A0A2T9WZJ4_9CREN/83-145   AC A0A2T9WZJ4.1
#=GS A0A2H5V2H6_9ARCH/78-139   AC A0A2H5V2H6.1
#=GS K0INX4_NITGG/73-136       AC K0INX4.1
#=GS A0A2T9WQK2_9CREN/80-142   AC A0A2T9WQK2.1
#=GS W7KIU3_9CREN/79-141       AC W7KIU3.1
#=GS A0A484IBH2_9ARCH/73-136   AC A0A484IBH2.1
#=GS F9VMU2_SULTO/78-140       AC F9VMU2.1
#=GS A0A5B9D6G7_9ARCH/82-143   AC A0A5B9D6G7.1
#=GS G4RLV2_THETK/81-140       AC G4RLV2.1
#=GS A0A0V8RTF1_PYROC/84-146   AC A0A0V8RTF1.1
#=GS A0A2T9X044_9CREN/80-142   AC A0A2T9X044.1
#=GS Q980L6_SACS2/79-141       AC Q980L6.1
#=GS Q8ZVU2_PYRAE/82-140       AC Q8ZVU2.1
#=GS H2C6Q1_9CREN/79-141       AC H2C6Q1.1
#=GS A4YJ07_METS5/79-141       AC A4YJ07.1
#=GS E6N696_CALS0/78-139       AC E6N696.1
#=GS A0A2H5UYB0_9ARCH/78-139   AC A0A2H5UYB0.1
#=GS A0A650CN05_9CREN/78-140   AC A0A650CN05.1
#=GS A0A2U9IEL8_9CREN/79-141   AC A0A2U9IEL8.1
#=GS D9Q078_ACIS3/83-145       AC D9Q078.1
#=GS A0A5B2Z2B2_9ARCH/73-136   AC A0A5B2Z2B2.1
#=GS I0A234_FERFK/78-140       AC I0A234.1
#=GS A0A557SSU9_9ARCH/73-136   AC A0A557SSU9.1
#=GS E1QV44_VULDI/81-139       AC E1QV44.1
#=GS F4B811_ACIHW/83-145       AC F4B811.1
#=GS A0A348B1C8_9CREN/79-141   AC A0A348B1C8.1
#=GS E0SPS7_IGNAA/80-142       AC E0SPS7.1
#=GS A0A2R4ZPB2_9CREN/83-145   AC A0A2R4ZPB2.1
#=GS I3TD69_THEC1/82-144       AC I3TD69.1
#=GS A3DMZ9_STAMF/82-144       AC A3DMZ9.1
#=GS A2BK21_HYPBU/84-146       AC A2BK21.1
#=GS A0A510DW43_9CREN/78-140   AC A0A510DW43.1
#=GS B8D654_DESA1/82-144       AC B8D654.1
#=GS L0AD38_CALLD/83-145       AC L0AD38.1
#=GS A0A4P2VDJ3_9ARCH/72-134   AC A0A4P2VDJ3.1
#=GS D5U347_THEAM/82-144       AC D5U347.1
#=GS A0A2U0S605_9ARCH/76-138   AC A0A2U0S605.1
#=GS A0A830GWE4_9CREN/68-127   AC A0A830GWE4.1
#=GS A0A6A8FIA8_9ARCH/73-136   AC A0A6A8FIA8.1
#=GS A0A6A7LDP2_9ARCH/73-136   AC A0A6A7LDP2.1
#=GS A0A060HMY4_9ARCH/137-200  AC A0A060HMY4.1
#=GS A8M9J8_CALMQ/80-139       AC A8M9J8.1
#=GS Q4JAY5_SULAC/79-141       AC Q4JAY5.1
A0A031LLG6_9CREN/79-141              ..v-REFASLLEKSLNLRT.GDIKLYEEAGFITI.LDNIKVSENGV.EGRGPLAQRINDIFDDYIAKKK....
A0A2T9WZJ4_9CREN/83-145              ...AKEFAEFIARFGNIDR.SQIKVFEDANVVEV.SRNIRVSKNGV.EGAGPLAQKVNTLYREYLRTK-g...
A0A2H5V2H6_9ARCH/78-139              .pd---LTSLFERINALFP.NMARYIREAGVIVV.MDRIRVTKDGViEGSGPAAERIQRIWEEW-----kret
K0INX4_NITGG/73-136                  .pf--DFKALAERLSRVFP.GLVKIREDVGAIIV.MDKIKVTQSGVeEGSGLAADRVRSIYDEFMRE--tt..
A0A2T9WQK2_9CREN/80-142              ...PREFASFLEKTLGLRS.TDIKVYDEAGVVVV.LDKIKVTENGV.EGSGPMAQKVYDVFNDYVKRKK....
W7KIU3_9CREN/79-141                  ..v-KEFADLVEKSLNLRP.GDVKVYEEAGVVTV.LEKIKVTEAGV.EGSGPLAQRVFDIYNEYVSKKR....
A0A484IBH2_9ARCH/73-136              .pf--DLKALSERLSRVFP.GLVKIREDVGAIIV.MDKIKVTESGIeEGSGLAATRVKAIYDEFLRES-k...
F9VMU2_SULTO/78-140                  ...PKEFADLVTKELNLRA.GDAKVYEEAGVVVI.LDRIKVSENGV.EGSGPLAQRIYDLYNDYINKKK....
A0A5B9D6G7_9ARCH/82-143              pmd-----KLVERLRKILPdESIELHDDGGSIKLlGGKIIITESGV.EGRGPTHDRIKRLFDNFCA---em..
G4RLV2_THETK/81-140                  ..l-RSFAKYAEKYF---P.GMVKYIEESNIVLI.GDKVRVSEIGI.EGSGPLAERVRQIYEEFVKKR-g...
A0A0V8RTF1_PYROC/84-146              ...PREFANYVARRLGLRP.DAIKVFQDAGVVVI.YNSIRVTANGV.EGAGPLAAKVSYVLREYIEAKK....
A0A2T9X044_9CREN/80-142              ...PREFASFLEKTLGLRS.TDIKVYDEAGVVVV.LDKIKVTENGV.EGSGPMAQKVYDVFNDYVKRKK....
Q980L6_SACS2/79-141                  ...PREFAELVEKSLNLRP.ADIKVYDETSVVTI.LEKIKVSQNGV.EGSGPMAQRIYDLYNDYINKKK....
Q8ZVU2_PYRAE/82-140                  ...MREFAKQAEKIF---P.GMVKYIEETNVVLI.GDKVRVSEIGV.EGVGPVAERAKRLFEEFLK---ry..
H2C6Q1_9CREN/79-141                  ...AREFAEILQRNLSLRP.GDIKLYDDVGVITV.MEKIRVTESGV.EGTGPMAQRIYDLYNDYISKRK....
A4YJ07_METS5/79-141                  ...AREFADVVQKNLGLRP.GDVKVYEEVGIITV.MERIKVSESGV.EGSGPMAQRIYDLYNEYIAKKK....
E6N696_CALS0/78-139                  .pd---MSALVERLNRLFP.NLVVYHKESDTIVV.MDRIRVSREGV.FGEGPAAERVRKVYEEFMREQK....
A0A2H5UYB0_9ARCH/78-139              ..p--DLSQLVERLNRLFP.NLVTYLKESDTIVV.MDRIRVSREGV.VGEGPVAERVRKVYEDFMKE--mq..
A0A650CN05_9CREN/78-140              ...PREFAELVAKELNIRT.ADIKVYEEAGIVTI.LDKIKVSENGV.EGSGPLAQKVYDIYNSYVEKKK....
A0A2U9IEL8_9CREN/79-141              ..v-KEFADIIEHSLNLRP.GDVKVYEEAGVITV.LERIKVTEGGV.EGNGPLAQRIYDMYNDYMSKKR....
D9Q078_ACIS3/83-145                  ...AKEFMEFLLRFGNIDR.SQVKVYEDANVVEV.SRTIRVSKNGV.EGSGPLAQKVNTLFREYLRTK-g...
A0A5B2Z2B2_9ARCH/73-136              pfn---LKALAERLSRVFP.GLVKIREDVGAIIV.MDKIKVTESGIeEGSGLSATRVKAIYDEFLRES-k...
I0A234_FERFK/78-140                  ...PDEFARLIVSKLNIRE.ADIKTYPEAGVLVI.LNNIRVSDKGV.EGSGPLAHKIYGLYTEYIENKK....
A0A557SSU9_9ARCH/73-136              .pf--DLKALSERLSRVFP.GLVKIREDVGAIIV.MDKIKVTESGIeEGSGLSASRVKAIYDEFLRES-k...
E1QV44_VULDI/81-139                  ..l-REFARYIDKYF---P.GMVKYIEEANVVQV.GN-VKVTTAGV.EGSGPLAKRVKELFDEFMSKRR....
F4B811_ACIHW/83-145                  ..v-KEFASLIEKSLNLRP.GDIKVYEEAGVITV.LEKIKVTENGV.EGSGPLAQRIYDLFNEYVEKKK....
A0A348B1C8_9CREN/79-141              ..v-REFADMLEKNLSLRP.GDIKVYEGAQVVTV.MDKIKVSEAGV.EGNGPLAQRISDVFKDYMNKK-q...
E0SPS7_IGNAA/80-142                  ...AEEFASLVISKLGLRP.DVVKVLSDTNSVII.YDRIKVTEAGV.EGTGSFAQRIYEIYTEYIESKK....
A0A2R4ZPB2_9CREN/83-145              ...PEEFFNLVVQRLNINP.ANVKVYKESGSVVI.LDRYRVSENGV.EGSGALANKIFDIWQEYMEGKK....
I3TD69_THEC1/82-144                  ...PEEFKNIIIKEMKLPE.HLVKIIPEARVVEV.QGRYRVSERGV.EGTGPIAETLYRLLEQYLETRR....
A3DMZ9_STAMF/82-144                  ...PNDFREYIIREMRLPE.HLVKIIPEARVVIV.QGRYKVSEKGV.EGTGPLAQTLYEFFQRYIEERK....
A2BK21_HYPBU/84-146                  ...AREFADYIVRKLGLRP.DAVRVYEDAGVVVV.YNSIRVTANGV.EGAGTLAAKISYLLKEYLEAKR....
A0A510DW43_9CREN/78-140              ..v-KEFGQKLEKDLNLRP.GDVKIYEDVGILTV.MDRIKVSEVGV.EGTGPLAQRVYEIYNDYISKRK....
B8D654_DESA1/82-144                  ...PEEFKEWVLREMKIPE.HMVKVIPEARVVEV.QGRYRVGEDGV.LGSGPIAETLHSIYKKYIEYRR....
L0AD38_CALLD/83-145                  ...AKEFSEFLSRFGNIEK.HLIKVYDDINVVEV.GKSIKVSKDGV.EGSGPLAQKIYSIYREYLRTK-g...
A0A4P2VDJ3_9ARCH/72-134              .fd---LKELADRLSKSFP.GNVTFRDDIGAIFV.MNRIKVTTAGVvEGSGIAADKVRKIYEDYVRE--mr..
D5U347_THEAM/82-144                  ...PEEFKDFLLHEMKIAE.HLVRVIPEARIVEV.QGRYRVSEKGV.EGVGPMAETLYSLWKKYIAVK-e...
A0A2U0S605_9ARCH/76-138              .pf--DLKALSERLEKVFP.TMVKLYEEQGFIWV.MEKIKVTEKGVtEGSGPIAERVQRVHSLFT----kea.
A0A830GWE4_9CREN/68-127              ..l-ADFAKELEKYF---P.GMIKYVEEANLIQV.GESVRVTQNGV.EGSGLTAKRVKELFDNYLKRR-q...
A0A6A8FIA8_9ARCH/73-136              .pf--DFKALSDRIARVFP.GLVKIREDVGAIIV.MDKIKVTQAGIeEGSGLAADRVKAIYEEFIRE--ik..
A0A6A7LDP2_9ARCH/73-136              .pf--DFKALSERLSKVFP.GLVRIREDVGAIIV.MDKIKVTETGIeEGSGLAADRVRVIYDEFMREN-r...
A0A060HMY4_9ARCH/137-200             .pf--DFKALAERLERAFP.GLVKIREDVGAIIV.MDKIKVTQSGVeEGTGLSADRVRSIFDAFMKETK....
A8M9J8_CALMQ/80-139                  ..l-RELAKILEKYF---P.GMVKYIEETNTIIV.SENVTVTEEGV.KGTGLVARRVKEIYDEYVQSRK....
Q4JAY5_SULAC/79-141                  ...PREFADVITKELNLRT.TDIKVYEEAGVVTI.LDRVKVTENGV.EGSGPLAQKVYDIFNSYIDKKK....
#=GC seq_cons                        ....cEFupll-+hhplhP.u.VKlh--uGllhV.h-+I+VoEsGV.EGoGPhApRlhclac-Ylcc+.....
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