GenomeNet

Database: Pfam
Entry: PAS_7
LinkDB: PAS_7
Original site: PAS_7 
#=GF ID   PAS_7
#=GF AC   PF12860.8
#=GF DE   PAS fold
#=GF AU   Mistry J;0000-0003-2479-5322
#=GF SE   Pfam-B_21375 (release 24.0)
#=GF GA   27.00 27.00;
#=GF TC   27.00 27.00;
#=GF NC   26.90 26.90;
#=GF BM   hmmbuild --amino HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF WK   PAS domain
#=GF RN   [1]
#=GF RM   9301332
#=GF RT   PAS domain S-boxes in archaea, bacteria and sensors for oxygen
#=GF RT   and redox. 
#=GF RA   Zhulin IB, Taylor BL, Dixon R; 
#=GF RL   Trends Biochem Sci 1997;22:331-333.
#=GF RN   [2]
#=GF RM   7756254
#=GF RT   1.4 A structure of photoactive yellow protein, a cytosolic
#=GF RT   photoreceptor: unusual fold, active site, and chromophore. 
#=GF RA   Borgstahl GE, Williams DR, Getzoff ED; 
#=GF RL   Biochemistry 1995;34:6278-6287.
#=GF RN   [3]
#=GF RM   9382818
#=GF RT   PAS: a multifunctional domain family comes to light. 
#=GF RA   Ponting CP, Aravind L; 
#=GF RL   Curr Biol 1997;7:674-677.
#=GF RN   [4]
#=GF RM   15009198
#=GF RT   The PAS fold: a redefination of the PAS domain based upon
#=GF RT   structural prediction. 
#=GF RA   Hefti MH, Francoijs KJ, de Vries SC, Dixon R, Vervoort J; 
#=GF RL   Eur J Biochem 2004;271:1198-1208.
#=GF DR   SCOP; 2phy; fa;
#=GF DR   SMART; PAS;
#=GF DR   HOMSTRAD; PAS;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   The PAS fold corresponds to the structural domain that has
#=GF CC   previously been defined as PAS and PAC motifs [4]. The PAS fold
#=GF CC   appears in archaea, eubacteria and eukarya.
#=GF SQ   6642
#=GS A0A2N4X4N5_9SPHN/610-725    AC A0A2N4X4N5.1
#=GS W7Q943_9GAMM/146-262        AC W7Q943.1
#=GS A0A178MW46_9PROT/140-255    AC A0A178MW46.1
#=GS A0A239KU36_9RHOB/85-200     AC A0A239KU36.1
#=GS A0A0P1END1_9RHOB/85-200     AC A0A0P1END1.1
#=GS A0A0F4PVG3_9GAMM/621-735    AC A0A0F4PVG3.1
#=GS S6AK01_PSERE/262-315        AC S6AK01.1
#=GS A9CUW8_HOEPD/482-595        AC A9CUW8.2
#=GS A0A0N0K344_9SPHN/430-543    AC A0A0N0K344.1
#=GS I3TLX4_TISMK/456-573        AC I3TLX4.1
#=GS A0A1C6LFF2_9NEIS/265-315    AC A0A1C6LFF2.1
#=GS A0A2M8ZTI6_9BRAD/355-470    AC A0A2M8ZTI6.1
#=GS A0A3S0KVH4_9PROT/126-249    AC A0A3S0KVH4.1
#=GS A0A175RKQ6_9RHIZ/219-333    AC A0A175RKQ6.1
#=GS A0A386E2D4_9RHIZ/366-481    AC A0A386E2D4.1
#=GS A0A1I5EST7_9RHIZ/222-336    AC A0A1I5EST7.1
#=GS A0A074TN86_9RHOB/15-130     AC A0A074TN86.1
#=GS A0A0Q7AIY1_9BURK/145-257    AC A0A0Q7AIY1.1
#=GS A0A285M074_9RHIZ/19-133     AC A0A285M074.1
#=GS A0A316IPT7_9GAMM/638-752    AC A0A316IPT7.1
#=GS A0A1N7MJU2_9PROT/31-142     AC A0A1N7MJU2.1
#=GS A0A1I4XJL9_9GAMM/646-760    AC A0A1I4XJL9.1
#=GS F2J6R9_POLGS/298-413        AC F2J6R9.1
#=GS A0A2A8HXH6_9SPHN/386-503    AC A0A2A8HXH6.1
#=GS A0A1N6F3F8_9BRAD/649-762    AC A0A1N6F3F8.1
#=GS A0A126T8Y4_9GAMM/291-405    AC A0A126T8Y4.1
#=GS A0A285T2L8_9RHOB/578-692    AC A0A285T2L8.1
#=GS A0A1B3M738_9RHIZ/560-674    AC A0A1B3M738.1
#=GS A0A328B8C4_9CAUL/413-527    AC A0A328B8C4.1
#=GS A0A0N0K1W8_9SPHN/430-543    AC A0A0N0K1W8.1
#=GS A0A3S0KXT3_9PROT/367-496    AC A0A3S0KXT3.1
#=GS A0A085FI79_9RHIZ/193-290    AC A0A085FI79.1
#=GS N6U4A1_9RHIZ/214-327        AC N6U4A1.1
#=GS A0A2N7TLE1_9GAMM/231-328    AC A0A2N7TLE1.1
#=GS I3TSA8_TISMK/505-616        AC I3TSA8.1
#=GS A0A327KHT3_9RHIZ/350-472    AC A0A327KHT3.1
#=GS A0A059KRE4_9BURK/78-193     AC A0A059KRE4.1
#=GS A0A3L7DZY1_9GAMM/654-770    AC A0A3L7DZY1.1
#=GS A0A0R0ABY1_9GAMM/141-255    AC A0A0R0ABY1.1
#=GS G8AIF5_AZOBR/368-483        AC G8AIF5.1
#=GS A0A1X1MTF5_9VIBR/634-748    AC A0A1X1MTF5.1
#=GS A0A231V368_9RHIZ/424-549    AC A0A231V368.1
#=GS A0A1G5GLZ3_9RHIZ/483-596    AC A0A1G5GLZ3.1
#=GS K9XH67_9CHRO/27-138         AC K9XH67.1
#=GS A0A1S8D5A4_9PROT/57-171     AC A0A1S8D5A4.1
#=GS A0A154NAV8_9SPHN/228-345    AC A0A154NAV8.1
#=GS A0A1Y6FL79_9SPHN/303-418    AC A0A1Y6FL79.1
#=GS A0A1Y6G392_9GAMM/619-738    AC A0A1Y6G392.1
#=GS H4F668_9RHIZ/561-673        AC H4F668.1
#=GS A0A147GXD3_9BURK/5-110      AC A0A147GXD3.1
#=GS A0A1G4RS99_9RHIZ/660-774    AC A0A1G4RS99.1
#=GS A0A1C7P232_9RHIZ/214-327    AC A0A1C7P232.1
#=GS G4R9F6_PELHB/458-573        AC G4R9F6.1
#=GS A1WHK4_VEREI/149-266        AC A1WHK4.1
#=GS Q3SWM8_NITWN/351-466        AC Q3SWM8.1
#=GS A0A0F3KR63_9NEIS/103-218    AC A0A0F3KR63.1
#=GS A0A126NWX2_9BRAD/179-290    AC A0A126NWX2.1
#=GS A0A0B0HC80_SOVGS/642-758    AC A0A0B0HC80.1
#=GS A0A1U7JEV7_9RHOB/392-498    AC A0A1U7JEV7.1
#=GS A0A062U5G7_9RHOB/450-564    AC A0A062U5G7.1
#=GS A0A1I1GW82_9GAMM/659-773    AC A0A1I1GW82.1
#=GS A0A3A6QTC4_9VIBR/94-196     AC A0A3A6QTC4.1
#=GS A0A0K1XCD1_9GAMM/637-751    AC A0A0K1XCD1.1
#=GS A0A0Q6C5U5_9RHIZ/250-364    AC A0A0Q6C5U5.1
#=GS A0A285TZ56_9RHIZ/384-500    AC A0A285TZ56.1
#=GS A0A1Y1SJK4_9RHOB/78-190     AC A0A1Y1SJK4.1
#=GS A0A0X3U3R8_9GAMM/639-755    AC A0A0X3U3R8.1
#=GS A0A1I6Y8P7_9RHIZ/280-404    AC A0A1I6Y8P7.1
#=GS U4KEF5_9VIBR/344-459        AC U4KEF5.1
#=GS J2ARZ3_9RHIZ/344-459        AC J2ARZ3.1
#=GS A0A0P1GMW6_9RHOB/354-469    AC A0A0P1GMW6.1
#=GS A0A1I7NPF4_9RHIZ/16-130     AC A0A1I7NPF4.1
#=GS A0A437M3K8_9PROT/22-132     AC A0A437M3K8.1
#=GS A0A2U1VQ54_9PROT/650-765    AC A0A2U1VQ54.1
#=GS A0A1B3MZG3_9SPHN/231-340    AC A0A1B3MZG3.1
#=GS A0A125NUD2_HYPSL/18-137     AC A0A125NUD2.1
#=GS A0A3N2R726_9RHOB/404-515    AC A0A3N2R726.1
#=GS A0A0P1FAW5_THAGE/143-259    AC A0A0P1FAW5.1
#=GS A0A2S0N8F4_9PROT/339-447    AC A0A2S0N8F4.1
#=GS A0A0Q5R529_9SPHN/285-401    AC A0A0Q5R529.1
#=GS C3KKP6_SINFN/428-544        AC C3KKP6.1
#=GS A0A0D1NYX1_BRAEL/256-367    AC A0A0D1NYX1.1
#=GS B2JY09_PARP8/226-338        AC B2JY09.1
#=GS A0A318TEC7_9BRAD/217-331    AC A0A318TEC7.1
#=GS A0A1U7JF05_9RHOB/415-530    AC A0A1U7JF05.1
#=GS A0A1I3Q416_9RHIZ/303-426    AC A0A1I3Q416.1
#=GS A0A2T6EBU4_9GAMM/11-127     AC A0A2T6EBU4.1
#=GS A0A1N7EI03_9RHOB/248-365    AC A0A1N7EI03.1
#=GS A0A418X856_9PSED/113-215    AC A0A418X856.1
#=GS Q2K5H4_RHIEC/332-447        AC Q2K5H4.1
#=GS X7EK52_9RHOB/91-207         AC X7EK52.1
#=GS A0A369WTF6_9GAMM/291-406    AC A0A369WTF6.1
#=GS C5T865_ACIDE/339-460        AC C5T865.1
#=GS A0A218QL81_9CYAN/158-273    AC A0A218QL81.1
#=GS A0A059IKR8_9RHOB/17-132     AC A0A059IKR8.1
#=GS A0A386DYC3_9RHIZ/383-500    AC A0A386DYC3.1
#=GS A0A073CAM6_PLAAG/219-333    AC A0A073CAM6.1
#=GS PLEC_CAUVC/455-557          AC P37894.2
#=GS Q47A14_DECAR/25-143         AC Q47A14.1
#=GS A0A1G8V0D0_9BURK/377-426    AC A0A1G8V0D0.1
#=GS A0A433X5K0_9RHIZ/216-325    AC A0A433X5K0.1
#=GS A0A426GNS7_9CAUL/283-399    AC A0A426GNS7.1
#=GS A0A0Q9JEU8_9BRAD/673-787    AC A0A0Q9JEU8.1
#=GS Q2G6T2_NOVAD/303-418        AC Q2G6T2.1
#=GS A0A1D9MGL5_9RHOB/227-341    AC A0A1D9MGL5.1
#=GS A0A1U7JH19_9RHOB/24-138     AC A0A1U7JH19.1
#=GS A0A1X6YGN1_9RHOB/85-199     AC A0A1X6YGN1.1
#=GS A0A0P1FAW5_THAGE/18-133     AC A0A0P1FAW5.1
#=GS A0A1E3H799_9RHIZ/384-500    AC A0A1E3H799.1
#=GS A0A437GXX6_9SPHN/234-341    AC A0A437GXX6.1
#=GS A0A1L9QXD7_9CYAN/570-684    AC A0A1L9QXD7.1
#=GS C7DEY8_9RHOB/99-215         AC C7DEY8.1
#=GS I1ATJ1_9RHOB/85-199         AC I1ATJ1.1
#=GS A0A073IJ58_9RHOB/16-131     AC A0A073IJ58.1
#=GS A0A419A8G3_9RHOB/15-130     AC A0A419A8G3.1
#=GS Q92TC2_RHIME/341-456        AC Q92TC2.1
#=GS A0A3N1MDW2_9PROT/356-470    AC A0A3N1MDW2.1
#=GS S6GNA8_9GAMM/263-377        AC S6GNA8.1
#=GS A0A2W4DEA8_9RHIZ/135-248    AC A0A2W4DEA8.1
#=GS A0A109LQT3_9SPHN/621-735    AC A0A109LQT3.1
#=GS A0A2R7RQ33_9PSED/26-140     AC A0A2R7RQ33.1
#=GS A0A2R8B158_9RHOB/91-207     AC A0A2R8B158.1
#=GS K2KEM9_9PROT/373-487        AC K2KEM9.1
#=GS A0A0Q5HQG2_9RHIZ/249-363    AC A0A0Q5HQG2.1
#=GS A0A318T914_9BRAD/71-186     AC A0A318T914.1
#=GS A0A1A6FL59_9RHIZ/310-427    AC A0A1A6FL59.1
#=GS D0D260_9RHOB/91-207         AC D0D260.1
#=GS J1TFY6_9RHIZ/370-485        AC J1TFY6.1
#=GS A0A1C2HQ15_9RHOB/97-212     AC A0A1C2HQ15.1
#=GS A0A0B1Q7Y9_9RHIZ/378-483    AC A0A0B1Q7Y9.1
#=GS C3MGT7_SINFN/383-501        AC C3MGT7.1
#=GS A0A0U3EPS7_9RHOB/137-256    AC A0A0U3EPS7.1
#=GS A0A0D7KBY8_9BURK/376-490    AC A0A0D7KBY8.1
#=GS A0A178MM02_9PROT/317-433    AC A0A178MM02.1
#=GS A0A1V3S8Z3_9BURK/596-713    AC A0A1V3S8Z3.1
#=GS A0A2T1KDW9_9ALTE/98-201     AC A0A2T1KDW9.1
#=GS Q89U11_BRADU/50-162         AC Q89U11.1
#=GS A0A1I7IPV9_9BURK/371-485    AC A0A1I7IPV9.1
#=GS A0A1V1V0F9_9CAUL/625-739    AC A0A1V1V0F9.1
#=GS A0A0Q8Q9A0_9SPHN/305-420    AC A0A0Q8Q9A0.1
#=GS A0A1G7GXR7_9RHOB/225-339    AC A0A1G7GXR7.1
#=GS A0A1X7GX90_9SPHN/433-546    AC A0A1X7GX90.1
#=GS A0A432ZK59_9GAMM/637-751    AC A0A432ZK59.1
#=GS A0A2A3JR58_9RHOB/50-167     AC A0A2A3JR58.1
#=GS A0A1Q6CJE4_9GAMM/639-753    AC A0A1Q6CJE4.1
#=GS A0A1Y6BB21_9PROT/334-448    AC A0A1Y6BB21.1
#=GS A0A0Q6D421_9RHIZ/641-751    AC A0A0Q6D421.1
#=GS B0ULD1_METS4/357-470        AC B0ULD1.1
#=GS J7QA63_METSZ/374-480        AC J7QA63.1
#=GS A0A0L1JPL6_9RHOB/259-376    AC A0A0L1JPL6.1
#=GS A0A2P5ILU8_9GAMM/10-122     AC A0A2P5ILU8.1
#=GS B1LXI7_METRJ/468-580        AC B1LXI7.1
#=GS A0A0W7WIW6_9RHOB/202-317    AC A0A0W7WIW6.1
#=GS A0A1M4YMC2_9RHOB/279-396    AC A0A1M4YMC2.1
#=GS A0A269PUA0_9GAMM/625-739    AC A0A269PUA0.1
#=GS W8HZ71_ENSAD/650-760        AC W8HZ71.1
#=GS A0A1U7JIX2_9RHOB/459-572    AC A0A1U7JIX2.1
#=GS A0A2U1VLW8_9PROT/228-332    AC A0A2U1VLW8.1
#=GS A0A1H0H4X5_9GAMM/651-765    AC A0A1H0H4X5.1
#=GS A0A0D6SS26_9PSED/642-756    AC A0A0D6SS26.1
#=GS M5F1B0_9RHIZ/383-488        AC M5F1B0.1
#=GS A0A127ENG1_9RHIZ/479-591    AC A0A127ENG1.1
#=GS A0A1C3RCF8_9RHIZ/144-262    AC A0A1C3RCF8.1
#=GS A0A432V9R2_9RHIZ/650-760    AC A0A432V9R2.1
#=GS A0A3L7AEB5_9RHIZ/59-173     AC A0A3L7AEB5.1
#=GS A0A1M4N3K2_9RHOB/78-194     AC A0A1M4N3K2.1
#=GS G8AWK2_AZOBR/445-561        AC G8AWK2.1
#=GS A0A2P7RSK1_9RHIZ/183-299    AC A0A2P7RSK1.1
#=GS A0A2T5BSB9_9RHOB/202-317    AC A0A2T5BSB9.1
#=GS A0A090F7E2_9RHIZ/493-605    AC A0A090F7E2.1
#=GS A0A2R8B3T0_9RHOB/93-209     AC A0A2R8B3T0.1
#=GS V7FQD0_9RHIZ/54-166         AC V7FQD0.1
#=GS A0A3Q8XNY0_9PROT/314-428    AC A0A3Q8XNY0.1
#=GS Q6NBH5_RHOPA/649-762        AC Q6NBH5.1
#=GS A0A0D2W0P2_9PROT/225-333    AC A0A0D2W0P2.1
#=GS A0A1Y5TB61_9RHOB/16-131     AC A0A1Y5TB61.1
#=GS A0A2W7IT86_9PROT/16-129     AC A0A2W7IT86.1
#=GS A0A2S2CS48_9PROT/262-385    AC A0A2S2CS48.1
#=GS A0A437M7E9_9SPHN/386-504    AC A0A437M7E9.1
#=GS A0A2N4XTJ9_9RHOO/134-248    AC A0A2N4XTJ9.1
#=GS A0A2T5BH94_MYCDI/384-500    AC A0A2T5BH94.1
#=GS E3BP88_9VIBR/635-749        AC E3BP88.1
#=GS A0A2T4ICF1_9RHOO/29-143     AC A0A2T4ICF1.1
#=GS A0A3N1MF75_9PROT/263-380    AC A0A3N1MF75.1
#=GS A0A1N6H3I6_9RHOB/224-338    AC A0A1N6H3I6.1
#=GS A0A2A9HDI1_9CHLR/38-152     AC A0A2A9HDI1.1
#=GS N1MVT6_9SPHN/302-417        AC N1MVT6.1
#=GS A0A2T6B3V7_9RHOB/85-199     AC A0A2T6B3V7.1
#=GS A0A318JCS7_9BURK/273-391    AC A0A318JCS7.1
#=GS A0A0H4L3J1_9RHOB/16-131     AC A0A0H4L3J1.1
#=GS A0A3N5DLJ2_9SPHN/302-416    AC A0A3N5DLJ2.1
#=GS A8U0G2_9PROT/181-297        AC A8U0G2.1
#=GS A0A081FVU7_9GAMM/382-497    AC A0A081FVU7.1
#=GS A0A1M7YG62_9DELT/653-768    AC A0A1M7YG62.1
#=GS A0A2P8FEI5_9RHOB/93-209     AC A0A2P8FEI5.1
#=GS A0A423PKJ4_9GAMM/652-766    AC A0A423PKJ4.1
#=GS A0A1Y6B610_9PROT/342-457    AC A0A1Y6B610.1
#=GS A0A1X7LDU2_9RHOB/20-135     AC A0A1X7LDU2.1
#=GS A0A0A0EQM7_9GAMM/644-758    AC A0A0A0EQM7.1
#=GS A0A1H8GHR9_9RHOB/231-344    AC A0A1H8GHR9.1
#=GS A0A238VQA7_9RHOB/256-373    AC A0A238VQA7.1
#=GS A0A2N9W3E3_9RHIZ/714-829    AC A0A2N9W3E3.1
#=GS F3KWU9_9BURK/14-128         AC F3KWU9.1
#=GS A0A165RKQ9_9SPHN/612-726    AC A0A165RKQ9.1
#=GS A0A1I7D644_9RHIZ/225-339    AC A0A1I7D644.1
#=GS A0A127EVZ8_9RHIZ/377-483    AC A0A127EVZ8.1
#=GS A0A347UL36_9RHOB/276-393    AC A0A347UL36.1
#=GS H5WQ80_9BURK/151-265        AC H5WQ80.1
#=GS C3KKH3_SINFN/181-306        AC C3KKH3.1
#=GS A0A0Q6LWI9_9RHIZ/387-492    AC A0A0Q6LWI9.1
#=GS A0A1B3NRH3_9BRAD/338-453    AC A0A1B3NRH3.1
#=GS A3SJP8_ROSNI/553-668        AC A3SJP8.1
#=GS A0A1A5TBD6_9RHIZ/649-759    AC A0A1A5TBD6.1
#=GS A0A363RLT7_9BURK/371-485    AC A0A363RLT7.1
#=GS A0A2A2KJI1_9BILA/297-413    AC A0A2A2KJI1.1
#=GS L0NHY6_9RHIZ/214-321        AC L0NHY6.1
#=GS A0A1G7V9E0_9RHIZ/252-368    AC A0A1G7V9E0.1
#=GS A0A1G8UD29_9GAMM/656-770    AC A0A1G8UD29.1
#=GS A0A1E5D6Y1_9VIBR/634-748    AC A0A1E5D6Y1.1
#=GS A0A0Q4XPK8_9RHIZ/411-468    AC A0A0Q4XPK8.1
#=GS A0A365WG14_9PSED/52-166     AC A0A365WG14.1
#=GS A0A256FZF0_9RHIZ/648-758    AC A0A256FZF0.1
#=GS A0A1I6SVM5_9RHOB/210-323    AC A0A1I6SVM5.1
#=GS C3MIU6_SINFN/214-327        AC C3MIU6.1
#=GS A0A371RKF2_9PROT/337-444    AC A0A371RKF2.1
#=GS A0A0H1RBV8_9RHIZ/379-485    AC A0A0H1RBV8.1
#=GS A0A1B3PJ59_9BURK/339-461    AC A0A1B3PJ59.1
#=GS A0A1H0Q7H4_9BURK/214-329    AC A0A1H0Q7H4.1
#=GS A0A0Q4XT39_9RHIZ/343-458    AC A0A0Q4XT39.1
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W7Q943_9GAMM/146-262                   .........................l-DESPDGILVV......D......AD.NR....IKTWNRR....F.L.E..I....W...E...I...P...E......A.V.M.........Q........A.......K....D......G......E.A.A..L.....Q...A..V.N......E.Q...V....Q..D.PE..........--.R.......................FV.NR..........I.R..Q..LY................A..S...L...D.-............EE.E...Q.....G....V...R...I..Q......M..........K......D.....G......R............V....L....E......R....Y...S..R..G..Lhg........sngD......Y......W......G......R....I.....W.....F....Y.R.DVTELQRM--te.............................................
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A0A0F4PVG3_9GAMM/621-735               ..........................LENLSHGISVV......D......KD.LN....LVAWNKR....Y.A.E..M....F...N...Y...P...E......G.F.L.........Q........Q.......G....Q......P......I.E.E..V.....I...R..Y.N......A.Q...R....G..E.CG..........PG.E.......................IE.HH..........V.E..K..RV................R..H...L...R.N............GS.S...H.....H....F...I...R..H......R..........R......S.....G......Q............V....Y....E......M....I...G..N..P..L.............P......D......G......G......F....V.....T.....S....F.S.DITAHMATQ-n..............................................
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