GenomeNet

Database: Pfam
Entry: PF18272
LinkDB: PF18272
Original site: PF18272 
#=GF ID   ssDNA_TraI_N
#=GF AC   PF18272.3
#=GF DE   single-stranded DNA binding TraI N-terminal subdomain
#=GF AU   Smart A;0000-0002-6965-5633
#=GF SE   PDB:4l0j
#=GF GA   26.40 26.40;
#=GF TC   30.60 29.90;
#=GF NC   25.60 23.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   23710762
#=GF RT   Structure of a translocation signal domain mediating conjugative
#=GF RT   transfer by type IV secretion systems.
#=GF RA   Redzej A, Ilangovan A, Lang S, Gruber CJ, Topf M, Zangger K,
#=GF RA   Zechner EL, Waksman G;
#=GF RL   Mol Microbiol. 2013;89:324-333.
#=GF DR   INTERPRO; IPR040987;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This is a subdomain found in TraI present in E. coli. Tra1 is a
#=GF CC   conjugative relaxase that forms part of the Type IV secretion
#=GF CC   system. This subdomain, referred to as 2A, is located in
#=GF CC   N-terminal region of the translocation signal (TSA) domain. TSA
#=GF CC   is known to reside in a larger ssDNA-binding domain [1].
#=GF SQ   31
#=GS A0A1I5B9V4_9ENTR/579-631    AC A0A1I5B9V4.1
#=GS A0A377YWM1_KLEPO/575-627    AC A0A377YWM1.1
#=GS A0A2A7U851_EDWTA/574-626    AC A0A2A7U851.1
#=GS A0A0H3H1C0_KLEPH/576-628    AC A0A0H3H1C0.1
#=GS A0A0J8YDR6_9GAMM/573-625    AC A0A0J8YDR6.1
#=GS R9VVE6_9ENTR/706-758        AC R9VVE6.1
#=GS H3RL88_PANSE/570-622        AC H3RL88.1
#=GS A0A0J8VKS9_9ENTR/660-712    AC A0A0J8VKS9.1
#=GS W1DQC2_KLEPN/577-629        AC W1DQC2.1
#=GS A0A2V1H7J9_9GAMM/578-630    AC A0A2V1H7J9.1
#=GS A6TIJ2_KLEP7/577-629        AC A6TIJ2.1
#=GS A0A6I4L7H6_9ENTR/577-629    AC A0A6I4L7H6.1
#=GS A0A2A2GQZ3_9GAMM/570-622    AC A0A2A2GQZ3.1
#=GS A0A653CIM2_CALMS/250-302    AC A0A653CIM2.1
#=GS A0A1E7YZ50_9GAMM/573-625    AC A0A1E7YZ50.1
#=GS A0A077ZHS7_TRITR/582-634    AC A0A077ZHS7.1
#=GS A0A653CKY7_CALMS/572-624    AC A0A653CKY7.1
#=GS W1EDJ1_KLEPN/163-215        AC W1EDJ1.1
#=GS J2WZJ0_KLEPN/575-627        AC J2WZJ0.1
#=GS A0A378BVT2_KLEPR/577-629    AC A0A378BVT2.1
#=GS A0A0J8YDH0_9GAMM/616-668    AC A0A0J8YDH0.1
#=GS A0A085FZ02_9ENTR/614-666    AC A0A085FZ02.1
#=GS A0A1X1EMA2_PANCY/687-739    AC A0A1X1EMA2.1
#=GS A0A4P7L7M4_9GAMM/570-622    AC A0A4P7L7M4.1
#=GS Q326X3_SHIDS/435-482        AC Q326X3.1
#=GS A0A0H2USH5_SHIFL/1-37       AC A0A0H2USH5.1
#=GS A0A0A3ZQF9_9GAMM/570-622    AC A0A0A3ZQF9.1
#=GS A0A1Y3ASG8_EURMA/1361-1413  AC A0A1Y3ASG8.1
#=GS D4EA24_SEROD/580-632        AC D4EA24.1
#=GS Q93GL4_SALTY/574-626        AC Q93GL4.1
#=GS A0A514EZI0_9ENTR/426-478    AC A0A514EZI0.1
A0A1I5B9V4_9ENTR/579-631               .DKKVRYSHLAAEYARDVIGGNSVIAQVAGEREQQVLTGYIRDALREQG-----riagd
A0A377YWM1_KLEPO/575-627               .DRNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTQAIRSELKTQGVLGH-p....
A0A2A7U851_EDWTA/574-626               .DKPSRFARLADDYVAARQAGDPVVAQVSGPTDQQHLTRAIRSAMKTQGALGQ-n....
A0A0H3H1C0_KLEPH/576-628               .DKGARYSRLAQEFAVSVREGQESVAQISGTREQSVLNGLIRDSLRQEGVLGEK.....
A0A0J8YDR6_9GAMM/573-625               .DRRQRYDRMAAEFARSVRAGEQSVAQVAGPREQAVLAGIVREALKAEKVLGGR.....
R9VVE6_9ENTR/706-758                   .DKRERYSALADRFAELSAGTEPVTAIVVGQREQKHLTGLIRDALQNAGQL---erd..
H3RL88_PANSE/570-622                   .DKRQRYTALAQDYAAMVGQGENVVVQASGEREQQSLTAALRQTLQEKGMLGSK.....
A0A0J8VKS9_9ENTR/660-712               .DKRVRYEALANRYAELSAGSEPVTAVVLGQREQKHLTGLIRDALQNAGQL---erd..
W1DQC2_KLEPN/577-629                   .DKGARYSRLAQEFAVSVREGQESVAQISGTREQSVLNGLIRDSLRQEGVLGEK.....
A0A2V1H7J9_9GAMM/578-630               .DKAQRFGKLARDYAKAVQSGEESVVQVSGIRNQKELNQQVREALKESDVLGRE.....
A6TIJ2_KLEP7/577-629                   .DKGARYSRLAQEFAVSVREGQESVAQISGTREQSVLNGLIRDSLRQEGVLGEK.....
A0A6I4L7H6_9ENTR/577-629               .DKGARYSRLAQEFAVSVREGQESVAQISGTREQSVLNGLIRDSLRQEGVLGEK.....
A0A2A2GQZ3_9GAMM/570-622               .DKTARLKKLAKDYTRTLAQGIDSVAQITGNREQKHLTGYIREALKTQELLGK-n....
A0A653CIM2_CALMS/250-302               .DRRQRYDRLAADFARSVRAGEHSVAQVSGPREQAVLAGAVREALKAEKVLGER.....
A0A1E7YZ50_9GAMM/573-625               .DRRQRYDRLAADFARSVRAGEHSVAQVTGPREQAVLAGVVREALKAEKVLGER.....
A0A077ZHS7_TRITR/582-634               .DRNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTQAIRSELKTQGVLGH-p....
A0A653CKY7_CALMS/572-624               .DRRQRYDRLAADFARSVRAGEHSVAQVSGPREQAVLAGAVREALKAEKVLGER.....
W1EDJ1_KLEPN/163-215                   .DKGARYSRLAQEFAVSVREGQESVAQISGTREQSVLNGLIRDSLRQEGVLGEK.....
J2WZJ0_KLEPN/575-627                   .DRNVRYDRLAGDFAASVKAGEESVAQVSGVREQPILTQAIRSELKTQGVLGH-p....
A0A378BVT2_KLEPR/577-629               .DKGARYSRLAQEFAVSVREGQESVAQISGTREQSVLNGLIRDSLRQEGVLGEK.....
A0A0J8YDH0_9GAMM/616-668               .DKRDRYRALAERFADLSGPDAPVTAVVVGQREQKQLTGIIRDALQNAGKL---ere..
A0A085FZ02_9ENTR/614-666               n-KRDRYEALATRFADLSHGDENVTAVVVGKREQTHLTGLIRDALQNAGQL---srd..
A0A1X1EMA2_PANCY/687-739               .DKRDRYRALAERFTDLSGPDNTVTAAVTGAREQQQLTGYIRDALQNAGKLGR-d....
A0A4P7L7M4_9GAMM/570-622               .DKTARLKKLAKDYTRTLAQGIDSVAQITGNREQKNLTGYIREALKTQGLLGK-n....
Q326X3_SHIDS/435-482                   .DRNVRYARLAGDFAASVKAGEESVAQVSGVREQA-----IRSELKTQGVLGH-p....
A0A0H2USH5_SHIFL/1-37                  m-----------------KAGEESVAQVSGVREQAILTQAIRSELKTQGVLGH-p....
A0A0A3ZQF9_9GAMM/570-622               .DKRQRYAALARDYVAMVSQGENVVAQVSGEREQQSLTAELRQTLQEKGLLGGK.....
A0A1Y3ASG8_EURMA/1361-1413             .DKAQRFGQLAKDVVQALAEDRPAVAQVNGPADQRMLTAMIRDELKETGWLGRE.....
D4EA24_SEROD/580-632                   .DKAQRFGQLAKGVVQALAEDRPSVAQVNGPADQRMLTAMIRDELKETGLLGRE.....
Q93GL4_SALTY/574-626                   .DRNVRYARLAGDFVAAVKAGEESVAQVSGMREQAILAGMIRSELKTQGILGQQ.....
A0A514EZI0_9ENTR/426-478               e-KGARYSRLAQEFAASVREGQESVAQISGSREQGILNGLIRETLKSEGVLGEK.....
#=GC seq_cons                          .DKpsRYs+LAp-FAtuVptGccSVAQVSGsREQphLsGhIR-uL+spGlLGc......
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