#=GF ID   PP_M1
#=GF AC   PF03012.15
#=GF DE   Phosphoprotein
#=GF AU   Griffiths-Jones SR;0000-0001-6043-807X
#=GF SE   Pfam-B_1336 (release 6.4)
#=GF GA   21.30 21.30;
#=GF TC   21.90 24.90;
#=GF NC   21.20 21.20;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF DR   INTERPRO; IPR004259;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family includes the M1 phosphoprotein non-structural RNA
#=GF CC   polymerase alpha subunit, which is thought to be a  component of
#=GF CC   the active polymerase, and may be involved in template binding.
#=GF SQ   10
#=GS PHOSP_WCBV/1-293        AC Q5VKP1.1
#=GS B2XXU5_LBV/1-297        AC B2XXU5.1
#=GS J7JWQ7_9RHAB/1-287      AC J7JWQ7.1
#=GS PHOSP_MOKV/1-297        AC P0C569.1
#=GS PHOSP_MOKV/1-297        DR PDB; 2WZL A; 197-297;
#=GS PHOSP_EBLV2/1-296       AC A4UHQ4.2
#=GS PHOSP_ABLVB/1-296       AC Q9QSP3.1
#=GS PHOSP_RABVP/1-296       AC P06747.1
#=GS PHOSP_RABVP/1-296       DR PDB; 3OA1 B; 190-295;
#=GS PHOSP_RABVP/1-296       DR PDB; 3OA1 A; 192-295;
#=GS A0A397T8T1_9GLOM/2-145  AC A0A397T8T1.1
#=GS PHOSP_RABVS/1-296       AC P16286.1
#=GS PHOSP_EBLV1/1-297       AC A4UHP9.1
PHOSP_WCBV/1-293                   ...MSKSLIHPSDLRAGLADIEMADETVDLVYKNLSEGQAHLQGEPFDIKDLPEGVSKLQISDNVRSDTSPNEYSDEDDEEGEDEYEEVYDPVSAFQDFLDETGSYLISKLKK.GEKIKKTWSEVSRVIYSYVMSNFPpRP.PKPTTKDIAVQADLKKPNEIQK.--ISEHKSKSEPSPREPV--VEMHKHA.....TLENPE.DDEGALESEIAHQVAESYSKKYKFPSKSSGIFLWNFEQLKMNLDDIVQVARGVPGISQIVERGGKLPLRCMLGYVGLETSKRFRSLVNQDKLCKLMQEDLNAY--sv............................
B2XXU5_LBV/1-297                   ...MSKDLVHPSLVRAGYVELEMADETADVVNLTIASNQAHLQGEPFYVDSLPEDMNRMRLAETSGKMEVAEDDEDDCSSEDEFYLPKGQDPLVPFQGFLEEVGARIVKRMKS.GEGFFKIWSTMTEDIKGYVLTNVM.KT.SSKTVENRQTQTDKQLSSNLPQeLTPPKREEALN-PKKAEERPKPSKAPE.....VSWTNEtEEVNDIEGEVAHQVAESFSKKYKFPSRSSGIFLWNFEQLKMNLDDIVKASMNIPGVEKIAEKGGKLPLRCILGFVALDSSKRFRLLADTDKVARLMQDDINSYMA..............................
J7JWQ7_9RHAB/1-287                 ...MSKNLIRPSDIRAGLQDIEMAEDTVNLVYQNLMSDQAHLREDPIDIKTLPEHFQGISLKG----NEGNTADRQEEEEYEDDTESEDIDPMEELQDFLDDLGSQILSRLKK.GDKIKKIWPGASLSIQNFVKTKFL.SKiSDAVCEDKFSQTDPIMSFCEGS.TIPSESLEYEKEVEMRDDESNQ-----.....-CCSEL.HEDEEVEAEIAHQVGESFAKKYKFPSRSSGIFLWNFEQLKMNLDDIVKTAQEVPGIIEWAREGKNLPLRGILGYVGLKHSKRFQLLVDQDRMSNLIQKDLDSY--sv............................
PHOSP_MOKV/1-297                   ...MSKDLVHPSLIRAGIVELEMAEETTDLINRTIESNQAHLQGEPLYVDSLPEDMSRLRIEDKSRRTKTEEEERDEGSSEEDNYLSEGQDPLIPFQNFLDEIGARAVKRLKT.GEGFFRVWSALSDDIKGYVSTNI-.--.--MTSGERDTKSIQIQTEPTASvSSGNESRHDSESMHDPNDKKDHTPDHDvvpdiESSTDK.GEIRDIEGEVAHQVAESFSKKYKFPSRSSGIFLWNFEQLKMNLDDIVKAAMNVPGVERIAEKGGKLPLRCILGFVALDSSKRFRLLADNDKVARLIQEDINSYMA..............................
#=GR PHOSP_MOKV/1-297        SS    ...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXX-.--.--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXX-HHHHHHHHHHHTTT--EEEEBSSSSEEEE-GGGG---HHHHHHHHTTSTTHHHHHHTT----HHHHHHHHHHHH-HHHHHHB-HHHHHHHHHHHHHHHHH..............................
PHOSP_EBLV2/1-296                  ...MSKIFVNPSAIRAGLADLEMAEETVDLVNKNIEDNQAHLQGEPIEVDALPEDMSKLQISERRPAQFTDNTGGKEEGSDEDFYMAESEDPYIPLQSYLEGVGIQLVRQMKT.GERFFKIWSQAVEEIISYVTVHFP.MP.LGKSTEDKSTQTPEEKFKPSPQ.QAVTKKESQSSKIKTISQESSGPPALE.....WSTTND.EENASVEAEIAHQIAESFSKKYKFPSRSSGIFLFNFEQLKMNLDDIVKEAKKIPGVVRLAQDGFRLPLRCILGGVGSVNSKKFQLLVNSDKLGKIMQDDLNRYLA..............................
PHOSP_ABLVB/1-296                  ...MSKIFVNPSAIRAGMADLEMAEETVDLINRNIEDNQAHLQGEPIEVDSLPEEIGKLNINEAKPQSFENNPIDIDGRMNEDFQMKEVEDPSIQFQSYLDNIGIQIVRKMKT.GERFFKIWSQTVEEIISYVGANFP.NP.SGKTTESKSTQTTPKKVKPEPP.SAPTEKPEQLSRTSMAPETTSGPLALD.....WSATND.DDDVSVEAEIAHQIAESFSKKYKFPSRSSGIFLYNFEQLKMNLDDIVKEARGVPGIIRLAKEGLRLPLRCILGWVASSHSKKFQLLVGSEKLSKIMQDDLNRYMS..............................
PHOSP_RABVP/1-296                  ...MSKIFVNPSAIRAGLADLEMAEETVDLINRNIEDNQAHLQGEPIEVDNLPEDMGRLHLDDGKSPNPGEMAKVGEGKYREDFQMDEGEDPSLLFQSYLDNVGVQIVRQIRS.GERFLKIWSQTVEEIISYVAVNFP.NP.PGKSSEDKSTQTTGRELKKETT.PTPSQRESQSSKARMAAQTASGPPALE.....WSATNE.EDDLSVEAEIAHQIAESFSKKYKFPSRSSGILLYNFEQLKMNLDDIVKEAKNVPGVTRLARDGSKLPLRCVLGWVALANSKKFQLLVESNKLSKIMQDDLNRYTS..............................
#=GR PHOSP_RABVP/1-296       SS    ...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX.XX.XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXH.HHHHHHHHHHHHHHHHTTT--EEEEBTTSSEEEE-TGGG---HHHHHHHHTTSTTHHHHHHTT----HHHHHHHHHHHH-HHHHHHB-HHHHHHHHHHHHHHH-X..............................
A0A397T8T1_9GLOM/2-145             aev--------------------------------------------NCKYLPENADKVASDDSSNEKEVDDTNEKKEYSSNERKKEKDDDVEDEVDSDLEKIKVQIIIRSKNiKDPIAKTLSISKNYIISYKAVNVC.EP.SNKLEDELDFQEFIINKE----.---------------------------.....------.---------------------------------------------------------------------------------------------------------ttykvppsyltfdvkssisvnrnnltiqaq
PHOSP_RABVS/1-296                  ...MSKIFVNPSAIRAGLADLEMAEETVDLINRNIEDNQAHLQGEPIEVDNLPEDMGRLHLDDGKSPNHGEIAKVGEGKYREDFQMDEGEDPSFLFQSYLENVGVQIVRQMRS.GERFLKIWSQTVEEIISYVAVNFP.NP.PGKSSEDKSTQTTGRELKKETT.PTPSQRESQSSKARMAAQIASGPPALE.....WSATNE.EDDLSVEAEIAHQIAESFSKKYKFPSRSSGILLYNFEQLKMNLDDIVKEAKNVPGVTRLAHDGSKLPLRCVLGWVALANSKKFQLLVESDKLSKIMQDDLNRYTS..............................
PHOSP_EBLV1/1-297                  ...MSKIFVNPSALRSGLADLEMAEETVDLVNKNMEDSQAHLQGIPIDVETLPEDIKRLRIADYKQGQQEEDASRQEEGEDEDFYMTESENSYVPLQSYLDAVGMQIVRKMKT.GDGFFKIWAQAVEDIVSYVATNFP.AP.VNKLQADKSTRTTLEKVKQAASsSAPSKREGPSSNMNLDSQESSGPPGLD.....WAASND.EDDGSIEAEIAHQIAESFSKKYKFPSRSSGIFLWNFEQLKMNLDDIVREVKGIPGVTRMARDGMKLPLRCMLGSVASNHSKRFQILVNSAKLGKLMQDDLNRYLA..............................
#=GC SS_cons                       ...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX.XX.XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXH.HHHHHHHHHHHHHHHHTTT--EEEEBTTSSEEEE-CGGG---HHHHHHHHTTSTTHHHHHHTT----HHHHHHHHHHHH-HHHHHHB-HHHHHHHHHHHHHHHHH..............................
#=GC seq_cons                      ...MSK.hVpPSsIRAGLADLEMAEETVDLlN+NIE-NQAHLQGEPI-VDsLPEDhu+LplsDspstsps-sspcpEsppcEDFphsEu-DPhl.FQSaLDslGsQIV++hKo.GE+FhKIWSpssE-IlSYVusNFP.pP.ssKooEDKuTQTshccscppss.ssPoc+cppSspschssppssss.uh-.....hSsTN-.---tulEAEIAHQlAESFSKKYKFPSRSSGIFLaNFEQLKMNLDDIVKpA+sVPGVpRlAc-GtKLPLRClLGaVALssSK+FQLLVsoDKLuKlMQDDLNpYhu..............................
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