GenomeNet

Database: Pfam
Entry: PRiA4_ORF3
LinkDB: PRiA4_ORF3
Original site: PRiA4_ORF3 
#=GF ID   PRiA4_ORF3
#=GF AC   PF07929.12
#=GF DE   Plasmid pRiA4b ORF-3-like protein
#=GF AU   Fenech M;0000-0001-7933-4617
#=GF SE   Pfam-B_4929 (release 14.0)
#=GF GA   26.60 26.60;
#=GF TC   26.60 26.60;
#=GF NC   26.50 26.20;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   2226811
#=GF RT   Characterization of the virA gene of the agropine-type plasmid
#=GF RT   pRiA4 of Agrobacterium rhizogenes. 
#=GF RA   Endoh H, Hirayama T, Aoyama T, Oka A; 
#=GF RL   FEBS Lett 1990;271:28-32.
#=GF DR   INTERPRO; IPR012912;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   Members of this family are similar to the protein product of
#=GF CC   ORF-3 (Swiss:Q44206) found on plasmid  pRiA4 in the bacterium
#=GF CC   Agrobacterium rhizogenes.  This plasmid is responsible for
#=GF CC   tumourigenesis at  wound sites of plants infected by this
#=GF CC   bacterium, but the ORF-3 product does not seem to be involved in
#=GF CC   the pathogenetic process [1]. Other proteins found in this
#=GF CC   family are annotated as being putative TnpR resolvases
#=GF CC   (Swiss:Q9LCU7, Swiss:Q50439), but no  further evidence was found
#=GF CC   to back this. Moreover,  another member of this family is
#=GF CC   described as a probable  lexA repressor (Swiss:Q7UEI4) and in
#=GF CC   fact carries a LexA  DNA binding domain (Pfam:PF01726), but no
#=GF CC   references were  found to expand on this.
#=GF SQ   2311
#=GS A0A077Z415_TRITR/1-175      AC A0A077Z415.1
#=GS A0A120A2B3_BACSE/2-168      AC A0A120A2B3.1
#=GS A0A345HET3_9FLAO/1-160      AC A0A345HET3.1
#=GS K1LDP1_9BACT/10-197         AC K1LDP1.1
#=GS A0A1G8G9R8_9RHIZ/4-141      AC A0A1G8G9R8.1
#=GS A0A0L8V463_9BACT/1-169      AC A0A0L8V463.1
#=GS G2MQ47_9EURY/2-148          AC G2MQ47.1
#=GS A0A397TJS1_9GLOM/53-231     AC A0A397TJS1.1
#=GS A0A3L8A0L3_9BACT/3-178      AC A0A3L8A0L3.1
#=GS A0A1M6QQA1_9CLOT/184-359    AC A0A1M6QQA1.1
#=GS A0A1H4IUR0_9MICO/23-137     AC A0A1H4IUR0.1
#=GS A0A1V1ZE35_9FLAO/1-165      AC A0A1V1ZE35.1
#=GS A0A2W4BTE2_9RHIZ/4-174      AC A0A2W4BTE2.1
#=GS A0A1I6H852_9FLAO/1-136      AC A0A1I6H852.1
#=GS A0A0D2CEP6_9EURO/301-515    AC A0A0D2CEP6.1
#=GS A0A3L8PT45_9GAMM/5-187      AC A0A3L8PT45.1
#=GS A0A078M642_9STAP/275-430    AC A0A078M642.1
#=GS D7BG59_MEISD/159-254        AC D7BG59.1
#=GS W8T285_PEPAC/18-218         AC W8T285.1
#=GS A0A1M6P3M4_9BACT/3-168      AC A0A1M6P3M4.1
#=GS A0A1S8TEM7_9CLOT/268-398    AC A0A1S8TEM7.1
#=GS L0ED44_THECK/1-173          AC L0ED44.1
#=GS A0A367GV82_9SPHI/2-138      AC A0A367GV82.1
#=GS F2IKJ4_FLUTR/1-190          AC F2IKJ4.1
#=GS A0A171APK0_9BACT/3-141      AC A0A171APK0.1
#=GS D1BSD9_XYLCX/53-236         AC D1BSD9.1
#=GS A0A1Y1Y3L2_9FUNG/27-98      AC A0A1Y1Y3L2.1
#=GS A0A1L8PG04_9LACT/190-376    AC A0A1L8PG04.1
#=GS A0A1Y4HNR2_9BACT/2-170      AC A0A1Y4HNR2.1
#=GS I3Y8W7_THIV6/293-418        AC I3Y8W7.1
#=GS A0A1I5WIE1_9FIRM/175-386    AC A0A1I5WIE1.1
#=GS A0A2I0QYL3_9FLAO/1-102      AC A0A2I0QYL3.1
#=GS A0A290ZNQ3_9RHOO/8-180      AC A0A290ZNQ3.1
#=GS A0A0R2B7N0_LACCL/4-145      AC A0A0R2B7N0.1
#=GS R4KKZ1_9FIRM/339-461        AC R4KKZ1.1
#=GS W1IZZ5_9GAMM/517-679        AC W1IZZ5.1
#=GS R0BP38_9FIRM/2-179          AC R0BP38.1
#=GS A0A0D2E906_9EURO/6-155      AC A0A0D2E906.1
#=GS A0A166MLF6_9AGAM/15-224     AC A0A166MLF6.1
#=GS A0A2N4S7T5_9BACT/2-167      AC A0A2N4S7T5.1
#=GS A0A2V5CCX8_9SPHN/14-190     AC A0A2V5CCX8.1
#=GS A0A1M5C518_9FLAO/1-164      AC A0A1M5C518.1
#=GS A0A059MU96_9NOCA/359-543    AC A0A059MU96.1
#=GS A0A074RMJ7_9AGAM/79-265     AC A0A074RMJ7.1
#=GS R7JIR4_9BACT/4-135          AC R7JIR4.1
#=GS A0A1H5T2R9_9RHOO/328-498    AC A0A1H5T2R9.1
#=GS B1XR15_SYNP2/8-164          AC B1XR15.1
#=GS Q2FPQ7_METHJ/60-201         AC Q2FPQ7.1
#=GS A0A495TAW3_9SPHI/2-192      AC A0A495TAW3.1
#=GS A0A2V1K8D7_9ACTO/29-190     AC A0A2V1K8D7.1
#=GS A0A2V3JG17_9EURY/7-182      AC A0A2V3JG17.1
#=GS A0LBS6_MAGMM/12-183         AC A0LBS6.1
#=GS A0A0C1R087_9RICK/1-55       AC A0A0C1R087.1
#=GS A0A411YCF9_9ACTN/6-132      AC A0A411YCF9.1
#=GS A0A3P7S0F6_9FIRM/184-359    AC A0A3P7S0F6.1
#=GS E6KA24_9BACT/90-271         AC E6KA24.1
#=GS A0A0Q8I990_9RHIZ/5-180      AC A0A0Q8I990.1
#=GS A0A1H2RK87_9BACT/2-138      AC A0A1H2RK87.1
#=GS F7NVX6_9GAMM/2-123          AC F7NVX6.1
#=GS A0A238XHX9_9FLAO/1-148      AC A0A238XHX9.1
#=GS A0A248YKL3_9ACTN/4-172      AC A0A248YKL3.1
#=GS R5YEK1_9FIRM/2-166          AC R5YEK1.1
#=GS A0A3M2KSL5_9NOCA/293-466    AC A0A3M2KSL5.1
#=GS A0A328B692_9CAUL/2-113      AC A0A328B692.1
#=GS A0A142L395_9BACT/2-139      AC A0A142L395.1
#=GS A0A1I4DC13_9RHIZ/1-114      AC A0A1I4DC13.1
#=GS A0A1I0HLJ0_9FIRM/2-171      AC A0A1I0HLJ0.1
#=GS V4IKV2_9DELT/4-173          AC V4IKV2.1
#=GS A0A1I3FKL1_9FLAO/1-132      AC A0A1I3FKL1.1
#=GS A0A1K1LL66_9FLAO/1-156      AC A0A1K1LL66.1
#=GS A0A1E3S082_9MYCO/1-146      AC A0A1E3S082.1
#=GS T1I8P6_RHOPR/1-109          AC T1I8P6.1
#=GS A0A3S0R4T2_9PROT/3-93       AC A0A3S0R4T2.1
#=GS A0A147IRR5_9SPHN/5-174      AC A0A147IRR5.1
#=GS A0A3R8Q9F5_9FLAO/1-171      AC A0A3R8Q9F5.1
#=GS Q67MA9_SYMTH/18-126         AC Q67MA9.1
#=GS B6YRC2_AZOPC/3-176          AC B6YRC2.1
#=GS A0A3M8GGN7_9FLAO/1-141      AC A0A3M8GGN7.1
#=GS A0A372R029_9GLOM/57-235     AC A0A372R029.1
#=GS A0A0S2I243_9BACT/3-152      AC A0A0S2I243.1
#=GS A0A1I2LG95_9BACT/1-167      AC A0A1I2LG95.1
#=GS D3VG82_XENNA/520-682        AC D3VG82.1
#=GS A0A0D0QK74_9RHOB/2-33       AC A0A0D0QK74.1
#=GS A0A1I5TCG9_9SPHN/15-189     AC A0A1I5TCG9.1
#=GS A0A0C1K340_9BACT/39-159     AC A0A0C1K340.1
#=GS A0A1H0PQ05_9ACTN/354-495    AC A0A1H0PQ05.1
#=GS A0A1I4Y6Q2_9FLAO/8-185      AC A0A1I4Y6Q2.1
#=GS A0A1A9I4J6_9BACT/2-156      AC A0A1A9I4J6.1
#=GS A0A2S5GBN8_9BACL/184-374    AC A0A2S5GBN8.1
#=GS K6U618_9CLOT/2-199          AC K6U618.1
#=GS A0A2W1JMG8_9CYAN/558-714    AC A0A2W1JMG8.1
#=GS A0A076MUL6_AMYME/315-429    AC A0A076MUL6.1
#=GS A0A074L6J9_9BACT/15-202     AC A0A074L6J9.1
#=GS A0A1W2EA17_9SPHI/2-136      AC A0A1W2EA17.1
#=GS A0A1Y3WDZ4_9FIRM/2-129      AC A0A1Y3WDZ4.1
#=GS A0A1S8BBY0_9PEZI/68-295     AC A0A1S8BBY0.1
#=GS H8KXW0_SOLCM/2-138          AC H8KXW0.1
#=GS A0A1H7HP42_9LACT/191-372    AC A0A1H7HP42.1
#=GS A0A0L0HK70_SPIPD/8-124      AC A0A0L0HK70.1
#=GS G2MQ30_9EURY/17-179         AC G2MQ30.1
#=GS A0A401GRQ9_9APHY/108-317    AC A0A401GRQ9.1
#=GS R6TM22_9FIRM/4-167          AC R6TM22.1
#=GS A0A374W626_9BACE/2-171      AC A0A374W626.1
#=GS A0A1M5E6D3_9FLAO/1-175      AC A0A1M5E6D3.1
#=GS G8Q731_PSEFL/13-182         AC G8Q731.1
#=GS A0A1V9G1X0_9BACT/2-144      AC A0A1V9G1X0.1
#=GS Q7NCL9_GLOVI/6-174          AC Q7NCL9.1
#=GS V4JL71_9DELT/26-190         AC V4JL71.1
#=GS A0A172YSY0_9GAMM/11-172     AC A0A172YSY0.1
#=GS A0A060RCJ4_9BACT/8-165      AC A0A060RCJ4.1
#=GS A0A0H3JB56_CLOPA/175-354    AC A0A0H3JB56.1
#=GS A0A0M4CT50_SPHS1/16-185     AC A0A0M4CT50.1
#=GS C7RBB3_KANKD/7-177          AC C7RBB3.1
#=GS A0A415EM69_9FIRM/3-177      AC A0A415EM69.1
#=GS A0A1I0JHH3_9RHOB/1-156      AC A0A1I0JHH3.1
#=GS A8UGB3_9FLAO/1-139          AC A8UGB3.1
#=GS A0A2P1PML6_9GAMM/8-177      AC A0A2P1PML6.1
#=GS K9VUL9_9CYAN/8-205          AC K9VUL9.1
#=GS A0A081PCY6_9SPHI/2-137      AC A0A081PCY6.1
#=GS A0A0X8WW31_9CYAN/573-698    AC A0A0X8WW31.1
#=GS D5WVI4_KYRT2/306-430        AC D5WVI4.1
#=GS A6BYZ5_9PLAN/238-411        AC A6BYZ5.1
#=GS A0A0X8G5K3_9FLAO/1-158      AC A0A0X8G5K3.1
#=GS A0A3R6L266_9BACT/3-167      AC A0A3R6L266.1
#=GS A0A1I7KVE8_9BURK/15-186     AC A0A1I7KVE8.1
#=GS A0A3D8Y6M7_9BACT/1-183      AC A0A3D8Y6M7.1
#=GS L8HFX5_ACACA/143-270        AC L8HFX5.1
#=GS A0A1B3MPN3_9SPHN/3-138      AC A0A1B3MPN3.1
#=GS R5WZH8_9FIRM/2-115          AC R5WZH8.1
#=GS A0A437SW00_9LACO/388-560    AC A0A437SW00.1
#=GS B4WJG3_SYNS7/10-176         AC B4WJG3.1
#=GS D5WVM9_KYRT2/17-190         AC D5WVM9.1
#=GS A0A0G4JNX9_9GAMM/4-182      AC A0A0G4JNX9.1
#=GS A0A345H159_9FLAO/1-133      AC A0A345H159.1
#=GS A0A0G4GDM1_VITBC/70-278     AC A0A0G4GDM1.1
#=GS A0A290Q7C1_9BACT/18-187     AC A0A290Q7C1.1
#=GS A0A2G0CEU5_9BACT/145-301    AC A0A2G0CEU5.1
#=GS T2KHY0_FORAG/1-139          AC T2KHY0.1
#=GS A0A1S9P657_9SPHI/2-191      AC A0A1S9P657.1
#=GS A0A0D8HNS9_9NOCA/50-230     AC A0A0D8HNS9.1
#=GS A0A328S6X2_9EURY/4-117      AC A0A328S6X2.1
#=GS A8ZL79_ACAM1/484-637        AC A8ZL79.1
#=GS A0A250KV48_9GAMM/9-179      AC A0A250KV48.1
#=GS A0A2A2W576_9PLAN/176-349    AC A0A2A2W576.1
#=GS A0A249SWH1_9BACT/3-158      AC A0A249SWH1.1
#=GS A0A372G3N7_9ACTN/4-172      AC A0A372G3N7.1
#=GS A0A139IP67_9PEZI/61-283     AC A0A139IP67.1
#=GS B0N7T0_9FIRM/2-164          AC B0N7T0.1
#=GS A0A1C2BXJ6_9PORP/5-168      AC A0A1C2BXJ6.1
#=GS A0A2S1SI43_9FLAO/1-168      AC A0A2S1SI43.1
#=GS A0A024FDH3_9FLAO/1-167      AC A0A024FDH3.1
#=GS A0A1H8FHC9_9MICO/66-238     AC A0A1H8FHC9.1
#=GS A0A1I5F2E1_9PSEU/11-180     AC A0A1I5F2E1.1
#=GS E2L7F7_MONPE/1-153          AC E2L7F7.1
#=GS A0A3A8WLA4_9BACT/432-555    AC A0A3A8WLA4.1
#=GS A0A127FAV2_STEDE/15-185     AC A0A127FAV2.1
#=GS A6TJU9_ALKMQ/41-254         AC A6TJU9.1
#=GS A0A3A6U7M3_9GAMM/14-141     AC A0A3A6U7M3.1
#=GS A0A433S9F5_9RHOB/6-157      AC A0A433S9F5.1
#=GS C8VZP2_DESAS/192-288        AC C8VZP2.1
#=GS M1Y2V9_NATM8/2-148          AC M1Y2V9.1
#=GS A0A172UFX2_9GAMM/19-192     AC A0A172UFX2.1
#=GS A0A1M6FT52_9FLAO/1-169      AC A0A1M6FT52.1
#=GS A0A2L0AEY3_9SPHN/1-166      AC A0A2L0AEY3.1
#=GS A0A495JQ96_9ACTN/11-179     AC A0A495JQ96.1
#=GS A0A0X8R4W1_9SPHN/1-162      AC A0A0X8R4W1.1
#=GS A0A370B026_9SPIO/190-362    AC A0A370B026.1
#=GS A0A1G9XKR1_9SPHI/1-49       AC A0A1G9XKR1.1
#=GS A0A068RAT4_9GAMM/521-686    AC A0A068RAT4.1
#=GS V7I8U2_9CLOT/2-187          AC V7I8U2.1
#=GS A0A2T7G2D7_9RHOB/3-45       AC A0A2T7G2D7.1
#=GS A0A1S2LF54_9BACI/175-357    AC A0A1S2LF54.1
#=GS R7D4R7_9BACE/1-170          AC R7D4R7.1
#=GS A0A419T8R7_9FIRM/2-174      AC A0A419T8R7.1
#=GS A0A1I1MCH6_9ACTN/8-128      AC A0A1I1MCH6.1
#=GS A0A385BS61_9FLAO/1-163      AC A0A385BS61.1
#=GS A0A285BCE3_9FIRM/175-373    AC A0A285BCE3.1
#=GS A0A0D7BBC9_9AGAR/61-269     AC A0A0D7BBC9.1
#=GS A0A1G8VQ79_9FLAO/1-168      AC A0A1G8VQ79.1
#=GS A0A0C3RSE3_PHLGI/57-225     AC A0A0C3RSE3.1
#=GS F4FEY6_VERMA/1-156          AC F4FEY6.1
#=GS U2HFS7_9SPHI/2-177          AC U2HFS7.1
#=GS A0A2I2KVE3_9ACTN/394-565    AC A0A2I2KVE3.1
#=GS A0A080M3P4_9PROT/10-179     AC A0A080M3P4.1
#=GS A0A0C1F4W9_9FLAO/1-132      AC A0A0C1F4W9.1
#=GS A0A402D454_9BACT/7-174      AC A0A402D454.1
#=GS A0A0J0ADT9_9MICO/2-177      AC A0A0J0ADT9.1
#=GS A0A2T0XPG0_9BACT/7-178      AC A0A2T0XPG0.1
#=GS A0A0C2HA60_9STAP/283-456    AC A0A0C2HA60.1
#=GS A0A1L9BS24_9RHOB/4-176      AC A0A1L9BS24.1
#=GS A0A1W1XI73_9DELT/7-176      AC A0A1W1XI73.1
#=GS L8JRM4_9BACT/3-176          AC L8JRM4.1
#=GS H0TUJ7_9BRAD/5-142          AC H0TUJ7.1
#=GS D4W1L0_9FIRM/1-97           AC D4W1L0.1
#=GS A1ZT29_9BACT/6-179          AC A1ZT29.1
#=GS A0A1G6X876_PEPNI/3-200      AC A0A1G6X876.1
#=GS A0A074Y3V5_AURSE/51-271     AC A0A074Y3V5.1
#=GS A0A1H8K6C3_9BACI/175-369    AC A0A1H8K6C3.1
#=GS A0A0F0CB59_9CLOT/2-180      AC A0A0F0CB59.1
#=GS A0A0M8KQ79_9MICO/45-220     AC A0A0M8KQ79.1
#=GS A0A1I1EYD8_9SPHI/2-134      AC A0A1I1EYD8.1
#=GS Q63IJ4_BURPS/17-193         AC Q63IJ4.1
#=GS A0A1G6ZU35_9FLAO/1-156      AC A0A1G6ZU35.1
#=GS Q1QJ51_NITHX/5-175          AC Q1QJ51.1
#=GS D2VS70_NAEGR/239-369        AC D2VS70.1
#=GS A0A3M8G4H5_9FLAO/1-168      AC A0A3M8G4H5.1
#=GS A0A1X7L721_9SPHI/2-139      AC A0A1X7L721.1
#=GS A0A265NEA6_9BACI/2-208      AC A0A265NEA6.1
#=GS A0A3Q9B5K0_9FIRM/175-370    AC A0A3Q9B5K0.1
#=GS W4UNZ9_9BACE/2-172          AC W4UNZ9.1
#=GS A0A2U2PCY0_9SPHI/2-141      AC A0A2U2PCY0.1
#=GS L9W7A9_9EURY/16-180         AC L9W7A9.1
#=GS W9ADM1_9BACI/2-216          AC W9ADM1.1
#=GS A0A1H0BI93_9EURY/2-169      AC A0A1H0BI93.1
#=GS A0A366I2R6_9FIRM/2-215      AC A0A366I2R6.1
#=GS R4KHZ1_9FIRM/154-249        AC R4KHZ1.1
#=GS A0A2J6REF8_9HELO/78-253     AC A0A2J6REF8.1
#=GS C0XR07_CORLD/1-146          AC C0XR07.1
#=GS A0A1H0DZ84_9FIRM/176-356    AC A0A1H0DZ84.1
#=GS A0A099BWL3_9BACT/53-226     AC A0A099BWL3.1
#=GS A0A1I1I151_9FIRM/2-180      AC A0A1I1I151.1
#=GS A0A1M5EQ01_9BACE/2-173      AC A0A1M5EQ01.1
#=GS A0A0K2E2B0_PISSA/11-132     AC A0A0K2E2B0.1
#=GS A0A328F897_9DELT/2-141      AC A0A328F897.1
#=GS A0A0Q5ATA1_9MICO/423-601    AC A0A0Q5ATA1.1
#=GS A0A0C1YHL8_9CYAN/4-177      AC A0A0C1YHL8.1
#=GS A0A2S7KK05_9FLAO/1-142      AC A0A2S7KK05.1
#=GS A0A109YN01_9SPHN/4-176      AC A0A109YN01.1
#=GS A0A0C3F671_9AGAM/53-267     AC A0A0C3F671.1
#=GS A0A0X1TLR0_9FIRM/2-181      AC A0A0X1TLR0.1
#=GS A0A1R4L595_9SPHI/2-174      AC A0A1R4L595.1
#=GS A0A0C5L9J3_9SPHN/1-168      AC A0A0C5L9J3.1
#=GS A0A2P6NC09_9MYCE/67-266     AC A0A2P6NC09.1
#=GS A0A1I6UCA4_9BACI/196-336    AC A0A1I6UCA4.1
#=GS A0A0F7JYW5_9GAMM/6-175      AC A0A0F7JYW5.1
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