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Database: Pfam
Entry: Packaging_FI
LinkDB: Packaging_FI
Original site: Packaging_FI 
#=GF ID   Packaging_FI
#=GF AC   PF14000.7
#=GF DE   DNA packaging protein FI
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF SE   Jackhmmer:B2PPD2
#=GF GA   27.00 27.00;
#=GF TC   31.90 37.80;
#=GF NC   25.60 25.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   8468297
#=GF RT   Sites and gene products involved in lambdoid phage DNA
#=GF RT   packaging.
#=GF RA   Smith MP, Feiss M;
#=GF RL   J Bacteriol. 1993;175:2393-2399.
#=GF DR   INTERPRO; IPR025147;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family includes the lambda phage DNA-packaging protein FI.
#=GF CC   Proteins in this family are typically between 124 and 140 amino
#=GF CC   acids in length.  There is a conserved EEE sequence motif.
#=GF SQ   35
#=GS A0A0L0AS55_9ENTR/2-128   AC A0A0L0AS55.1
#=GS A0A0H2VTS0_SHIFL/3-125   AC A0A0H2VTS0.1
#=GS J9JUN9_ACYPI/332-421     AC J9JUN9.2
#=GS A0A346FJ27_9CAUD/15-142  AC A0A346FJ27.1
#=GS A0A2R9YJP4_9CAUD/2-129   AC A0A2R9YJP4.1
#=GS J9KTE3_ACYPI/13-92       AC J9KTE3.2
#=GS X1WR78_ACYPI/3-57        AC X1WR78.1
#=GS A0A0H3JJM1_ECO57/2-129   AC A0A0H3JJM1.1
#=GS FI_LAMBD/2-129           AC P03709.1
#=GS FI_LAMBD/2-129           DR PDB; 2LSM A; 72-129;
#=GS A0A0J5KR44_PLUGE/2-125   AC A0A0J5KR44.1
#=GS K7P7M3_9CAUD/3-135       AC K7P7M3.1
#=GS M9NZD6_BPPH8/15-147      AC M9NZD6.1
#=GS A0A3E2N3P4_9CLOT/2-129   AC A0A3E2N3P4.1
#=GS A0A0K2FIR1_9CAUD/2-129   AC A0A0K2FIR1.1
#=GS A0A1E2Z7W9_9GAMM/2-129   AC A0A1E2Z7W9.1
#=GS K7PM13_9CAUD/3-132       AC K7PM13.1
#=GS Q8ZMZ9_SALTY/3-116       AC Q8ZMZ9.1
#=GS V5AZG1_9GAMM/2-129       AC V5AZG1.1
#=GS A0A085AFP1_9ENTR/3-128   AC A0A085AFP1.1
#=GS X1WK63_ACYPI/80-190      AC X1WK63.1
#=GS A0A083ZYT0_9GAMM/2-129   AC A0A083ZYT0.1
#=GS A0A0B8YBC3_9SPHI/15-142  AC A0A0B8YBC3.1
#=GS A0A1S1V4Q7_9FIRM/2-129   AC A0A1S1V4Q7.1
#=GS X1XJK9_ACYPI/10-95       AC X1XJK9.1
#=GS A0A2G1VM43_9FLAO/2-129   AC A0A2G1VM43.1
#=GS K7PHB8_9CAUD/2-129       AC K7PHB8.1
#=GS O64323_BPN15/3-141       AC O64323.1
#=GS A0A2X3DXI6_KLUCR/3-131   AC A0A2X3DXI6.1
#=GS A0A066UJV0_9GAMM/2-129   AC A0A066UJV0.1
#=GS A0A1I9KF86_9CAUD/3-97    AC A0A1I9KF86.1
#=GS K7P7S8_9CAUD/2-129       AC K7P7S8.1
#=GS A0A2S4MXD1_SHIFL/3-130   AC A0A2S4MXD1.1
#=GS A0A2G8DRY2_9GAMM/2-112   AC A0A2G8DRY2.1
#=GS R8AR53_PLESH/3-60        AC R8AR53.1
#=GS A0A417YE14_9BACI/2-129   AC A0A417YE14.1
A0A0L0AS55_9ENTR/2-128              .........TKDELIARLKALGAQLGRDVSLAGSKEELAMRVAELEEELE....DDG..DGGSGDVTT.ATTD..ASVLPG.PGT----...AATLA...TSERSPVALKKVVARATLHID.AIAEDDDIPVPIATLGTVIRISSQYVTGLVNAGLV............................................
A0A0H2VTS0_SHIFL/3-125              .........TKEENLKRLCELAERLGREPDVSGSAADIAQRVAELEEELG....DAG..EVAEPDTYSpSKDD.pTAHKG-.-ESVPEQ...PGIVT...---GDETGQVTVVALATLHTK.-----CNGSVIFVSPGTSFRVSAEVAASMAAGGLA............................................
J9JUN9_ACYPI/332-421                .........EKEKLIARLNDLGTQLNGKVSTNGTIQELTMRIDELEKELDgdacSID..VSNS-----.----..------.-------...-----...---------------------.-----------------------------------nnpftdinlpcnpilgdtlsidsinladndfenvlfss......
A0A346FJ27_9CAUD/15-142             .........TKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELD....DTD..ETAGQDTPL.SRENvlTGHENE.VGSAQPD...TVILD...-----TSELVTVVALVKLHTD.ALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLA............................................
A0A2R9YJP4_9CAUD/2-129              .........TKDELIARLQVLGEQLNRDVSLTGTKEELALRVAELEEELD....DTD..DAAGQDTSL.SPENvlTGHENE.VVSAQPD...TVIHD...-----TAELVTVVALVTLHTD.ALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLA............................................
J9KTE3_ACYPI/13-92                  nnthydldg--------------------------------------DAI....SID.gENGEKNAPD.STDS..TDSTDSdVD----G...TEKVK...TDAVTTDDRVSVETLVTLHIN.ALHATRND---------------------------lfipida.....................................
X1WR78_ACYPI/3-57                   .........KKENLIARLNDLGTHLSREVSSSGFIQELTMRIAELEKELD....-GD..---------.----..------.-------...-----...---------------------.-----------------------------------assidapifagv................................
A0A0H3JJM1_ECO57/2-129              .........TKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELEEELD....DTD..ETAGQDTPL.SRENvlTGHENE.VGSAQPD...TVILD...-----TSELVTVVALVKLHTD.ALHVTRDEPVAFVLPGTAFRVSAGVAAEMTERGLA............................................
FI_LAMBD/2-129                      .........TKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELD....DTD..ETAGQDTPL.SRENvlTGHENE.VGSAQPD...TVILD...-----TSELVTVVALVKLHTD.ALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLA............................................
#=GR FI_LAMBD/2-129           SS    .........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXX..XXXXXXXXX.XXXXXXXXXXXX.XXXXX--...-----...------S--EEEEESS-B---.EE-SSSS-EES-B-TT-EEEE-HHHHHHHHHTTSE............................................
A0A0J5KR44_PLUGE/2-125              .........TKEELIARLKALAEQLGRDVNLTGSKEDLAMRVAELEEEIG....--D..EGDGESDAG.DNEQ..AGGETT.AQA----...TGSVP...KGNV-QDSLIRIKTLFSLHVE.AWHELSDEPMSLVEPGVVVRVSPADAQELFTRKLA............................................
K7P7M3_9CAUD/3-135                  .........EKEKLVARLNELGTQLNREVSSSGTIQELTMRIAELEEELDgdaiSVD.gKNGVQNASD.STDS..TDST--.-DSNVAN...VAKVK...TESATTGDLVSVETLATLHID.ALHATRNEPVSIVEPGVIIRVSEQDADDLIAKGLA............................................
M9NZD6_BPPH8/15-147                 .........EKEKLIARLNDLGTQLNREVSTSGTIQELTMRIAELEEELDgdasSID.gENGEKNAPD.STDS..TDSTDSdVD----G...TEKVK...TEAVTTDDRVSVETLVTLHIN.ALHATRNESVSIVEPGVVIRVTDVEANDLISRALA............................................
A0A3E2N3P4_9CLOT/2-129              .........TKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELD....DTD..ETAGQDTPL.SRENvlTGHENE.VGSAQPD...TVILD...-----TSELVTVVALVKLHTD.ALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLA............................................
A0A0K2FIR1_9CAUD/2-129              .........TKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELD....DTD..ETAGQDTPL.SRENvlTGHENE.VGSAQPD...TVILD...-----TSELVTVVALVKLHTD.ALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLA............................................
A0A1E2Z7W9_9GAMM/2-129              .........TKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELD....DTD..ETAGQDTPL.SRENvlTGHENE.VGSAQPD...TVILD...-----TSELVTVVALVKLHTD.ALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLA............................................
K7PM13_9CAUD/3-132                  .........EKEKLVARLNELGTQLNREVSTSGTIQELTMRIAELEEELDgnagSVD.gENGVQNASD.STDS..TDN--N.VAN----...VAKVK...TESATTGDLVSVETLATLHID.ALHATRNEPVSIVEPGVIIRVSEQDADDLIAKGLA............................................
Q8ZMZ9_SALTY/3-116                  .........TKEENIQRLRELATRLGRDPDVSGSAAELSQRVMEWEEEAE....---..---------.----..AEHLPA.VEN-DSD...ESIVP...PGIGQRSERVLIRALRTLHIC.AIDPDSNRELDMVMAGNPARISQHDVDELIAAGLI............................................
V5AZG1_9GAMM/2-129                  .........TKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELD....DTD..ETAGQDTPL.SRENvlTGHENE.VGSAQPD...TVILD...-----TSELVTVVALVKLHTD.ALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLA............................................
A0A085AFP1_9ENTR/3-128              .........TKAENIVTLVALAEKLGRQVDTTGTAAEVAQRVAEWQEEAD....GLD..GTGTEPVDD.GEPV.gT----D.SESAQQP...AAISP...S---EHDGMVLVKLLMSVHLAgAYAADGVTKVDIGTAGQQVRIPESLVEPL------hrekvi......................................
X1WK63_ACYPI/80-190                 .........EKKKLIARLNDLGTQLNREVSTYGTIHELTMRIADLEEELDgdasSID.gENGEKNAPD.STDS..TDSTDSdVD----G...TEKVK...TEAVTTDDRVSVKTLVTLHIN.ALHATRNESVSIV----------------------............................................
A0A083ZYT0_9GAMM/2-129              .........TKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELD....DTD..ETAGQDTPL.SRENvlTGHENE.VGSAQPD...TVILD...-----TSELVTVVALVKLHTD.ALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLA............................................
A0A0B8YBC3_9SPHI/15-142             .........TKNELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELD....DTD..ETAGQDTPL.SRENvlTGHENE.VGSAQPD...TVILD...-----TSELVTVVALVKLHTD.ALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLA............................................
A0A1S1V4Q7_9FIRM/2-129              .........TKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELD....DTD..ETAGQDTPL.SRENvlTGHENE.VGSAQPD...TVILD...-----TSELVTVVALVKLHTD.ALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLA............................................
X1XJK9_ACYPI/10-95                  .evprlekn-----------------------------------------....---..------A--.----..PDSTDR.TDCTDSDvdgTEKVK...TEAVTTDDRVSVETLVTLHIY.ALPATRNESVSIVEPGDVIRVTDGEANDLISRALA............................................
A0A2G1VM43_9FLAO/2-129              .........TKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELD....DTD..ETAGQDTPL.SRENvlTGHENE.VGSAQPD...TVILD...-----TSELVTVVALVKLHTD.ALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLA............................................
K7PHB8_9CAUD/2-129                  .........TKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELD....DTD..ETAGQDTPL.SRENvlTGHENE.VGSAQPD...TVILD...-----TSELVTVVALVKLHTD.ALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLA............................................
O64323_BPN15/3-141                  .........EKEKLIARLNELGTQLNREVSTSGTIQELTMRIAELEEELDgdatSVD.gESGGQNAAD.STDS..TDSTDS.TDSTDSD...VADVEkvkSEAGTNGDQVSVETLATLHVE.ALHATRNEPVSIVEPGVIIRVSEQDADELISKGLA............................................
A0A2X3DXI6_KLUCR/3-131              .........EKEKLIARLNELGVQLGREVNTGGTIQELSMRIAELEEELD....GGV..DTDGVENGG.VSDG..ATSPGT.VEPVAPV...NTVLT...GSI--DDALVAVETLATLHIE.ALHATRDEPVSIVEAGTVIRVTETDANSLVALGLV............................................
A0A066UJV0_9GAMM/2-129              .........TKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELD....DTD..ETAGQDTPL.SRENvlTGHENE.VGSAQPD...TVILD...-----TSELVTVVALVKLHTD.ALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLA............................................
A0A1I9KF86_9CAUD/3-97               .........EKEQLIARVAELSAKLGRDADTTGTVAELKARIEELEVELD...eDTGlvNGSG-----.----..------.-------...-----...---------------------.-----------------------------------ndghtqplsltpaatrsesagnlvqiipkvtlhlrlgnepllvv
K7P7S8_9CAUD/2-129                  .........TKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELD....DTD..ETAGQDTPL.SRENvlTGHENE.VGSAQPD...TVILD...-----TSELVTVVALVKLHTD.ALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLA............................................
A0A2S4MXD1_SHIFL/3-130              ........k-KDDNLKRLRELAASLGREPDISGSAADIAQRVAELEEELA....NMD..DTDIRDKSA.HPENalTGHENE.VISAQPE...TVIQN...-----MDDLVTVVALVTLHTD.ALHATRDEPLAFVPPGMAFRVFAGVAAGMTERGLA............................................
A0A2G8DRY2_9GAMM/2-112              .........TKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELEEELD....DTD..DAAGQDSSV.SPENalTGHENE.VVSAQTD...TVT--...----DTAALVTVVALVTLHTD.ALHATRDEPVAFVLPGTAF----------------............................................
R8AR53_PLESH/3-60                   .........QKEELITQLNALSEQLGRKLPVTGSLADLQQRVREAQEELA....EMD..DV-------.----..------.-------...-----...---------------------.-----------------------------------prvsgeksaakg................................
A0A417YE14_9BACI/2-129              .........TKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELD....DTD..ETAGQDTPL.SRENvlTGHENE.VGSAQPD...TVILD...-----TSELVTVVALVKLHTD.ALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLA............................................
#=GC SS_cons                        .........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXX..XXXXXXXXX.XXXXXXXXXXXX.XXXXX--...-----...------S--EEEEESS-B---.EE-SSSS-EES-B-TT-EEEE-HHHHHHHHHTTSE............................................
#=GC seq_cons                       .........TK-ELIARLpsLGEQLNRDVSlTGTtpELAhRVAELcEELD....-sD..EsuGp-ssh.Sp-s..Tuppsp.VsSsps-...Tsllc........Tu-LVoVhALVpLHsD.ALHATRDEPVuhV.PGsshRVSsssAs-hhp+GLA............................................
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