#=GF ID   Peptidase_C6
#=GF AC   PF00851.19
#=GF DE   Helper component proteinase
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF SE   Pfam-B_326 (release 3.0)
#=GF GA   25.00 25.00;
#=GF TC   34.20 33.60;
#=GF NC   21.30 20.10;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF DR   INTERPRO; IPR001456;
#=GF DR   MEROPS; C6;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This protein is found in genome polyproteins of potyviruses.
#=GF SQ   9
#=GS POLG_RGMVD/267-711        AC O11436.1
#=GS POLG_TRMVU/473-850        AC A4KZ49.3
#=GS POLG_BSTV1/641-809        AC Q65730.1
#=GS POL2_BAYMY/121-255        AC Q9YJW2.1
#=GS A0A1L3KNT4_9VIRU/141-261  AC A0A1L3KNT4.1
#=GS POLG_BVY3/732-1070        AC A0AUJ5.1
#=GS POLG_PVYN/299-740         AC P18247.2
#=GS MVP_PVYN/299-740          AC P0CJ93.2
#=GS POLG_SPMMV/757-1196       AC P89201.1
POLG_RGMVD/267-711                   .............................................APYCQPSHHT---------FGHMCRvtwsdteilqfreMLSQAIMPQRDPRCDICAEVAGQRTKDEILQHARTSQMMQMLEFGKEDERWKAPRRVMETLLEESNWPSMDYSTSSEITTICCGNNDEPFRRIYSIMKVLAEPNLADVSAWQEANSSLLQLARYMKNREMSVQAGNSATFTNP.FPPTVHtfgptnngadilqgpW......DN----....--.---WGDKQPIALAFFEKHFNKWQ-I.NEFSI...DRRVRKHIRGTRKLALMDLNQSRSIKDLEDH.............................VQEEEIPYERK......................---TESCITMYKDQYLYSCSCVTARDGKPYLSMRYLQATGLIPIARGADVQHMPNSDSWQGFYYVAPEGYCYINIFLPMLA------LAPYYKvgklsELIGKLIKVLGKWPKLKDVALACLYITEYHTYAQNALLPPILVHHSTRTMHVVDTLGSLSVGYHVLKAGTVKHLVNLASRLATGEMLDYNVG..............
#=GR POLG_RGMVD/267-711        AS    .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*.............................................................................*.......................................................
POLG_TRMVU/473-850                   tmlissvltteirardnlepiqeriftrnmplgplydvagamnra-------------------------.............---------------------------------------------------------------------------------------------------------------------VIDIQTAVQNMQLSI--GNSNMNEQQ.RNQTLL...............-......-NEINK....IK.QHSFMQTKEMLSRF-ENIAQTYQNIiSSASQplsIHSMRQLMMDSRMDESFEFDIMRKKGSIASIapmafrtfediysqpgvynqkwlnltpsgRFQTDIDYLRLdlpid...........viqkkkHVVNRNE---IKEETCYVIVGQVNVSFCEVVARCFVPIPHVLRVGSPQNPTMIKIQDQEGGKTLVPKSGFCYVLQ-LVLMLGYVPDQLTAAFV.....KDVGIVVESLGPWPLFVDYLGAIKNLIIRYPTTIKAPTALHIVDHVDTVIHVMTTLGCVNKGEHYLTLQSVAQLHDAAMTVNIETFKDYRIG..............
#=GR POLG_TRMVU/473-850        AS    .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*.............................................................................*.......................................................
POLG_BSTV1/641-809                   ...........................meignialklchwegdva-------------------------.............-----------------------------------------------------------------------------------------------------------------------------------------------.------...............-......------....--.-------------------------.-----...-------------------------------.............................-----------......................-----------------------------LFSPIIRPTPGHLMFGSTD--RLLRIPDMTNARHYVPKVGYCYLYL-FALAMNFCDGENRVTVD.....AYINKTCRELGAWPKFGEVLRALDRMATYYG-CYDAVVPVMLVDHVQRTIHVPSPFGIVQSGMHMIQINNLGDLIKLDT-MGASELKEYEIG..............
#=GR POLG_BSTV1/641-809        AS    .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*.............................................................................*.......................................................
POL2_BAYMY/121-255                   ................................ayeathlqpvqtf-------------------------.............-----------------------------------------------------------------------------------------------------------------------------------------------.------...............-......------....--.-------------------------.-----...-------------------------------.............................-----------......................-------------------------------------------------------------IAFNFAHGYCYLSLFIPLSFRITFENARGFSR.....-FLEQLPDILGAYPTLAAIYKTMLFAIRLFPEVLQAPIPIIAKRPGVLQFHVSDARG-LPPSWFPMKCGSVASFVALITNNLNSDLLNGIVG..............
#=GR POL2_BAYMY/121-255        AS    .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*.............................................................................*.......................................................
A0A1L3KNT4_9VIRU/141-261             ..........................................knr-------------------------.............-----------------------------------------------------------------------------------------------------------------------------------------------.------...............-......------....--.-------------------------.-----...-------------------------------.............................-----------......................----------------------------------------------------------------VAKQGHCFFNLLIAISYFVRAEDDAMFA-.....NIVGELDGVITYWPKLSDVSKYAQYIIAKLPYLGAMPIPVVAANHGQKLLHICDQRGA-PHGWHAMKMGLLAELANA---------------gfmkgsaipnyyvg
#=GR A0A1L3KNT4_9VIRU/141-261  pAS   .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*.............................................................................*.......................................................
POLG_BVY3/732-1070                   .........nlqqdcladdylqyseelqplhddlselkplnvinn-------------------------.............-----------------------------------------------------------------------------------------------------------------------ELIR--QNMHITTLYSNMSKLQNDaLATKAEmklpl....fgvaqlV......VNQLKY....NTtTHEWGERGDYVRKFVGKFFADFP-T.TQVPK...QYMTRTTNGHIRITAYKALSLTSDPEIMMSRr...........................mTQPMLTTAKQ-......................---ADCVFQSTTGATCTSASCTTNSSGVVLSNKCADPAPNTLRVRTMWDDIIIELPL-QGGRVHVPLEGLCFSTIFLHMYLLVPDESVKLFHR.....TVTERAMPSLGQWPTLRHLATWVLNLVAMFPVLSTTPMPEILVHHESQSVHIPDCLGTATSGYHRLNIVTPYDFIIFATEIGRNGCQEYRVG..............
#=GR POLG_BVY3/732-1070        AS    .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*.............................................................................*.......................................................
POLG_PVYN/299-740                    .............................................ARMRYPSDHTCVAGLPVEDCGRVAA.............LMAHSILPCYKITCPTCAQQYASLPVSDLFKLLHKHARDGLNRLGADKDRFIHVNKFLIALEHLTEPVDLNLELFNEIFKSIGEKQQAPFKNLNVLNNFFLKGKENTAHEWQVAQLSLLELARFQKNRTDNIKKGDISFFRNK.LSAKAN...............WnlylscDNQLDK....NA.NFLWGQREYHAKRFFSNFFEEIDPA.KGYSA...-YEIRKHPSGTRKLSIGNLVVPL---DLAEF.............................RQKMKGDYRKQ......................PGVSKKCTSSKDGNYVYPCCCTTLDDGSAIESTFYPPTKKHLVIGNSGDQKFVDLPKGDSEMLYIAKQGYCYINVFLAMLINISEEDAKDFTK.....KVRDMCVPKLGTWPTMMDLATTCAQMRIFYPDVHDAELPRILVDHDTQTCHVVDSFGSQTTGYHILKASSVSQLILFANDELESDIKHYRVG..............
#=GR POLG_PVYN/299-740         AS    .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*.............................................................................*.......................................................
MVP_PVYN/299-740                     .............................................ARMRYPSDHTCVAGLPVEDCGRVAA.............LMAHSILPCYKITCPTCAQQYASLPVSDLFKLLHKHARDGLNRLGADKDRFIHVNKFLIALEHLTEPVDLNLELFNEIFKSIGEKQQAPFKNLNVLNNFFLKGKENTAHEWQVAQLSLLELARFQKNRTDNIKKGDISFFRNK.LSAKAN...............WnlylscDNQLDK....NA.NFLWGQREYHAKRFFSNFFEEIDPA.KGYSA...-YEIRKHPSGTRKLSIGNLVVPL---DLAEF.............................RQKMKGDYRKQ......................PGVSKKCTSSKDGNYVYPCCCTTLDDGSAIESTFYPPTKKHLVIGNSGDQKFVDLPKGDSEMLYIAKQGYCYINVFLAMLINISEEDAKDFTK.....KVRDMCVPKLGTWPTMMDLATTCAQMRIFYPDVHDAELPRILVDHDTQTCHVVDSFGSQTTGYHILKASSVSQLILFANDELESDIKHYRVG..............
#=GR MVP_PVYN/299-740          AS    .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*.............................................................................*.......................................................
POLG_SPMMV/757-1196                  .............................................RASRLKADHEPYESSNNELIGRLAR.............-LVAAVIPKGHLYCKTCCLRVIKSKRADIVNALSKAKQRG------ERDEFIYDE--LIKLFELQAPPPYKIATIT--------SDDDMFAHIRI--------------GWKPYSGRLSLIMQHLQGLHTSI-----SMLHQS.LAGAQN...............-......DQQIDRqalhNQ.VRILHQRNEEHMPFLKKAVDEIQLL.NATDQ...VANARELYLDTRATSTGDFDILRKYQSIYEFfpnimsr...............ankvgmaVIKSETSLSKAfalmdnaksmnaihtligedviDNTSGACL-MKNDKTFFSIGCKQGVDGSKMYGPL-CPTKQHVRIHRVESNMQIPLPTFHDATVWEFNEGYCYANQ-LAIMVGFINEDEMEFYK.....NQMNQIVLNLGAWPTFEQYLVELRAISLDYPKVRGCPAAIHLVSHANKLIHVLGQFGTINQGWHALEVATVGELVDLCHKKVEGEMLTYKVG..............
#=GR POLG_SPMMV/757-1196       AS    .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................*.............................................................................*.......................................................
#=GC seq_cons                        ...........................................................................................................................................................................................................l.p..pshp.sh.....sh.pp..hs.t.........................p..............hhppt..h..F.tphhtph..h.pths.....h.hRph..t.Rh.t.hths.......h.ph.............................h....hsh.p..........................stt....hptthhhshss....sh..h.u.hh.Ps.thlhltpsts.hhl.lsp.psthhalsppGYCYlslhLshhhthstEsspsFh+.....phhsphs.pLGsWPpht-lhpshtthhhhaP.ltsAslPhlLVcHsspshHVsDshGshssGaHhLchuoVupLlthssp.hpu-hhcYcVG..............
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