GenomeNet

Database: Pfam
Entry: Phi-29_GP4
LinkDB: Phi-29_GP4
Original site: Phi-29_GP4 
#=GF ID   Phi-29_GP4
#=GF AC   PF05464.12
#=GF DE   Phi-29-like late genes activator (early protein GP4)
#=GF AU   Moxon SJ;0000-0003-4644-1816
#=GF SE   Pfam-B_16889 (release 8.0)
#=GF GA   21.60 21.60;
#=GF TC   22.80 99.00;
#=GF NC   21.00 18.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   10438592
#=GF RT   The switch from early to late transcription in phage GA-1:
#=GF RT   characterization of the regulatory protein p4G. 
#=GF RA   Horcajadas JA, Monsalve M, Rojo F, Salas M; 
#=GF RL   J Mol Biol 1999;290:917-928.
#=GF DR   INTERPRO; IPR008771;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family consists of phi-29-like late genes activator (or
#=GF CC   early protein GP4). This protein is thought to be a positive
#=GF CC   regulator of late transcription and may function as a sigma like
#=GF CC   component of the host RNA polymerase [1].
#=GF SQ   5
#=GS A0A1X9SGP7_9CAUD/1-126  AC A0A1X9SGP7.1
#=GS Q9T1J9_BPGA1/1-128      AC Q9T1J9.1
#=GS B7SSM4_BPNF/1-125       AC B7SSM4.1
#=GS TF4_BPPH2/1-125         AC P03682.1
#=GS TF4_BPPH2/1-125         DR PDB; 2FIO A; 2-124;
#=GS TF4_BPPH2/1-125         DR PDB; 2FIP C; 2-116;
#=GS TF4_BPPH2/1-125         DR PDB; 2FIP B; 2-116;
#=GS TF4_BPPH2/1-125         DR PDB; 2FIP E; 2-116;
#=GS TF4_BPPH2/1-125         DR PDB; 2FIP F; 2-112;
#=GS TF4_BPPH2/1-125         DR PDB; 2FIP D; 2-115;
#=GS TF4_BPPH2/1-125         DR PDB; 2FIO B; 2-114;
#=GS TF4_BPPH2/1-125         DR PDB; 2FIP A; 2-116;
#=GS A0A0N9SGQ0_9CAUD/1-125  AC A0A0N9SGQ0.1
A0A1X9SGP7_9CAUD/1-126             .MPVTIRGIYHNLKESEYTAS..NGEVVFFFSSKLYRDKFLNKYKEQRTITSKRMNK.ITK.AdEYNTDMLSDFLLYRDIETRGFYAWVKGVTIEWQSMYLYALARMTEKNTQDWFEMQKPKLEERKRIM-e...
Q9T1J9_BPGA1/1-128                 .MVVTQGGIYHNLKESRYVITceNGLVTYFFSSKMYMHKFLNTYKENREKNNIKMSK.LLKdF.TSDIDLLSDICYYKQVEKRGFLVLYKGDEMTWQESQTLGLQRRNEKKSLNYQEVSRLKLRDYL----rimd
B7SSM4_BPNF/1-125                  .MPRTARGIYHNLKESEYVVS..NGDATFFFSSEMYLNKFLDGYQKHREEFNKKINR.ITD.T.PLNMDMLADITFYSNVEKRGFHAWLKGCNTTWQEIHVYALRTMTKPCTQNWSRIRKPKLVERRKSMV....
TF4_BPPH2/1-125                    .MPKTQRGIYHNLKESEYVAS..NTDVTFFFSSELYLNKFLDGYQEYRKKFNKKIER.VAV.T.PWNMDMLADITFYSEVEKRGFHAWLKGDNATWREVHVYALRIMTKPNTLDWSRIQKPRLRERRKSMV....
#=GR TF4_BPPH2/1-125         SS    .X-B-TTS-BSSGGG-SEEEE..-SSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHT.T--.-.S---HHHHHHHHHHHH-TS---EEETTEEE-HHHHHHHHHHHTTSSS----EEES---HHHHHHHXX....
A0A0N9SGQ0_9CAUD/1-125             m--KTKRGVYHNIKESEYTVS..NGDTVFFFTSDFYRQKFLTGYKEHRKTFKHRMSKtIDD.E.VFNFTFLSDMYYYREVEQRGFYTWIKGVEFDWQGLHLYALARLTEKNINDWREILKPKLGERKKFM-e...
#=GC SS_cons                       .X-B-TTS-BSSGGG-SEEEE..-SSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHT.T--.-.S---HHHHHHHHHHHH-TS---EEETTEEE-HHHHHHHHHHHTTSSS----EEES---HHHHHHHXX....
#=GC seq_cons                      .MP+TpRGIYHNLKESEYVlS..NGDVTFFFSS-hYhsKFLsGYKEaRccFNKKMsK.Isc.s.saNhDMLSDIsaY+-VEKRGFaAWlKGsshTWQElHlYALpRMTEKNTpDWpEIpKPKLcER+K.M.c...
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