GenomeNet

Database: Pfam
Entry: Ploopntkinase3
LinkDB: Ploopntkinase3
Original site: Ploopntkinase3 
#=GF ID   Ploopntkinase3
#=GF AC   PF18751.1
#=GF DE   P-loop Nucleotide Kinase3
#=GF AU   Iyer LM;0000-0002-4844-2022
#=GF AU   Aravind L;0000-0003-0771-253X
#=GF AU   Burroughs AM;0000-0002-2229-8771
#=GF AU   El-Gebali S;0000-0003-1378-5495
#=GF SE   Iyer LM
#=GF GA   27.00 27.00;
#=GF TC   27.00 27.60;
#=GF NC   26.80 26.70;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 45638612 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   23814188
#=GF RT   Computational identification of novel biochemical systems
#=GF RT   involved in oxidation,  glycosylation and other complex
#=GF RT   modifications of bases in DNA.
#=GF RA   Iyer LM, Zhang D, Burroughs AM, Aravind L;
#=GF RL   Nucleic Acids Res. 2013;41:7635-7655.
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   A P-loop Nucleotide Kinase predicted to be involved in modified
#=GF CC   base biosynthesis [1].
#=GF SQ   11
#=GS Q716S4_9CAUD/6-188      AC Q716S4.1
#=GS A0A1D8EYB2_9CAUD/1-194  AC A0A1D8EYB2.1
#=GS S5Y5G5_9CAUD/1-187      AC S5Y5G5.1
#=GS A0A0F6WDP6_9CAUD/1-192  AC A0A0F6WDP6.1
#=GS Q0RM57_FRAAA/1-123      AC Q0RM57.1
#=GS G8I9C4_9CAUD/8-198      AC G8I9C4.1
#=GS G1BL60_9CAUD/1-192      AC G1BL60.1
#=GS S5Y177_9CAUD/1-177      AC S5Y177.1
#=GS G8I8D8_9CAUD/1-186      AC G8I8D8.1
#=GS V5UNI0_9CAUD/11-203     AC V5UNI0.1
#=GS Q1A0B3_9CAUD/1-188      AC Q1A0B3.1
Q716S4_9CAUD/6-188                 .t-NHRLIYLIGAPGAGKSTMMAHLTDCFDREHVPGTD.-TA.PAYDLL...KYTDGEVAGVELGKRRPQFSGTDALPASIIEKAIPWLNT....KPFRLVFAEGAR.LANK..RFLDAAVAAGYEVHLGWLNHPDVDAWRAARSAEVGKVQSEAWVKGRVTAVTKLVENYIN.........RPARG-.VKVYVGGPEQLTSDMEHLL-g......................
A0A1D8EYB2_9CAUD/1-194             ..MTPRMIYLVGQPGAGKSTLMASLTKGLVRSTIDDSG.TLV.PHDVLV...DRVTGAVVGAEIGKRRGAFSGTDALASSIIDKAVPWVHT....QPYDLLLAEGAR.LANK..RFIDSAAEAGYAVILGLLDHDQADAWRKQRSKALGREQNPSWVKGRLTSSRKLGAAYPSafvvggaviAPEPGK.VITLAGHPDELEPVLAAFI-n......................
S5Y5G5_9CAUD/1-187                 ..MTARLIYLVGQPGSGKSTLMSALTAGFDRHKIAPAPdYPV.AHDVLA...DKTTGEVVGAELGVRRELFSGTDALPSSIIDKAAPWVRS....QPYPLLLAEGAR.LANR..RFIDAALEGGYEVTLVLLDHNDAEDWRKVRSKAIGKTQNPSWVKGRLSASRNLADALSG.........PAYEGKaVEVLRGHPDPIRSILKGID-a......................
A0A0F6WDP6_9CAUD/1-192             ..MKPRMIYLVGQPGAGKSTLMAALTKGLVRSPWH-EH.-TV.PHDQLV...DRVTGETVAAELGVQRGAFSGTDALASSIIDKAVPWIQS....RPYDLVLAEGAR.LANR..RFIDAALDAGYAVTIGLLDHDQADTWRKRRSKALGREQSPSWVKGRLTASRNLAAHYPGalvvagsviPAEPGK.AIVLAGHPDELEPILAAVMA.......................
Q0RM57_FRAAA/1-123                 .m------------------------------------.---.------...----------ELGRRRRAFSGTDALPMDAVVAAERYVRSgqaaRETALLLGEGAR.LGCA..RFLAAAVAGGWTVELVYLHGTEVAAQRRAGR---AAGQDERWVRGAATRARRLAEGPPA.........------.--------------------gvlvhrvdvaaevtlpd......
G8I9C4_9CAUD/8-198                 ..MTPRMIYLVGQPGSGKSTLMAALTKGLVRSPWE---.HTV.PHDQLV...DRVTGAVVGAEIGKQRGAFSGTDALASSIIDKAVPWVQQ....QPYDLLLAEGAR.LANK..RFIQATADAGYAVMLGLLDHDAAEGWRKKRSKAIGRDQNPSWVKGRLTASRRLADAYPSalvvagsviAPEPGK.VVVLKGHPDELEPVLAAFM-s......................
G1BL60_9CAUD/1-192                 ..MTPRMIYLVGQPGSGKSTLMAALTKGLVRSPWD-EH.-TV.PHDVLV...DRVTGEVVGAEIGKQRGAFSGTDALASSIIDKAVPWVQT....QPYDVLLAEGAR.LANK..RFIQAAADAGYAVMLGLLDHPDADTWRKRRSKALGREQNLSWVKGRLTSSRKLAEAYPSafvvggaviPPEPGK.VISLAGHPDELEPILAAFI-s......................
S5Y177_9CAUD/1-177                 ..MTYRMIYLVGQPGSGKSTLMAELTRPYDLLVRE---.ETV.PHLGLI...DRTTGEVIGAEIGKRRDSFSGTDALASAIIDKAVPWVST....RPYEMLLAEGAR.LANA..RFLDAAIAAGYDLTVALLDHDQAEEWRLARSRKLKRVQNESWVKGRLSASRNLADAM--.........---KGK.ARVLRGHPDQLRQGLQEIIA.......................
G8I8D8_9CAUD/1-186                 ..MNPRLIFIVGGPGSGKSQLMADLTASYQRIPVNQKHpEWV.LHDMLR...DPTTGAVIGAEMGQRRGLFSGTDTLASAIIDKAIPWIEA....HPYDLILAEGAR.LATP..RFLQAALDAGYDVTVALLDHDQAELWREERARKLKRVQNESYVEARRSSARSFADTAIK.........LKGRYP.VRVWTGHPDDLRQGLQEIIA.......................
V5UNI0_9CAUD/11-203                ..MTPRMIYLVGQPGSGKSTLMAALTKGLVRCPIDTE-.APV.PHDLLL...DRVTGCAVGAEIGKQRGAFSGTDALASSIIDKAVPWVQS....HPYDLLLAEGAR.LANK..RFIQAAADAGYAVMLGLLDHDQADAWRKKRSKAIGREQNPSWVKGRLTASRRLAEAYPSafvvagaviAPEPGK.VITLAGHPDELEPVLAAFM-v......................
Q1A0B3_9CAUD/1-188                 ..----MIYLVGQPGSGKSTLMAALTKGLVRAPWD-EH.-TV.PHDQLV...DRVTGAVVAAEIGKQRGAFSGTDALASSIIDKAVPWIQT....QPYDVLLAEGAR.LANR..RFIDAAAAAGYAVMLGLLDHDAAEGWRKKRSKALGREQNPSWVKGRLTASRRLADAYPSalvvagaviAPEPGK.VAVLKGHPDELERVLAAFM-s......................
#=GC seq_cons                      ..MssRMIYLVGQPGSGKSTLMAuLT+GhsRpshc.p...sV.PHD.Ll...DRsTGtVVGAElGKpRGAFSGTDALASSIIDKAVPWVpo....pPYDLLLAEGAR.LAN+..RFIsAAs-AGYsVhLGLLDHDpA-sWRKpRSKAlGRpQN.SWVKGRLTASR+LA-AYPu.........sst.GK.VhVLtGHPD-LcslLtuhh.s......................
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