GenomeNet

Database: Pfam
Entry: Pns11_12
LinkDB: Pns11_12
Original site: Pns11_12 
#=GF ID   Pns11_12
#=GF AC   PF17464.4
#=GF DE   Non-structural protein 11 and 12
#=GF AU   El-Gebali S;0000-0003-1378-5495
#=GF SE   PRODOM:PD016556
#=GF GA   25.00 25.00;
#=GF TC   28.00 76.80;
#=GF NC   21.90 21.40;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   16432031
#=GF RT   Pns12 protein of Rice dwarf virus is essential for formation of
#=GF RT   viroplasms and nucleation of viral-assembly complexes.
#=GF RA   Wei T, Shimizu T, Hagiwara K, Kikuchi A, Moriyasu Y, Suzuki N,
#=GF RA   Chen H, Omura T;
#=GF RL   J Gen Virol. 2006;87:429-438.
#=GF DR   INTERPRO; IPR035351;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This is a domain of unknown function found in Phytoreovirus.
#=GF CC   Family members include the Rice dwarf virus Pns11 and Pns12.
#=GF CC   Rice dwarf virus (RDV) is an icosahedral, double-layered
#=GF CC   particle. The viral genome consists of 12 segmented dsRNAs that
#=GF CC   encode seven structural (P1, P2, P3, P5, P7, P8 and P9) and five
#=GF CC   non-structural (Pns4, Pns6, Pns10, Pns11 and Pns12) proteins.
#=GF CC   Pns11 is known to bind nucleic acids and Pns12 is a
#=GF CC   phosphorylated protein. The non-structural proteins Pns6, Pns11
#=GF CC   and Pns12 of RDV are the major constituents of the matrix of
#=GF CC   viral inclusions in which the assembly of progeny virions and
#=GF CC   the synthesis of viral RNA are thought to occur [1].
#=GF SQ   3
#=GS NSP11_RGDV/2-204    AC A4PBQ0.1
#=GS C1JAW8_9REOV/1-197  AC C1JAW8.1
#=GS NSP11_RDVF/9-189    AC Q85442.1
NSP11_RGDV/2-204               .TSNEENPVGVQTLKPNNDAKRVFEM..RKIPSSNVMRVEYTKQSKYRTCVCPSALHFAEECPSNDVLFSVGAHRNMLCVAKAFDQTKPRGMQRGNRRNNVAKVMTLNELMPKD..DSNDRKKAKTSKDRKVEKSSR...GRASSSRSRGRGGFSRNGRDRRETDSQDEYSEDNSYKSEEESTEDETAPLTKKDMLKMMSMFQSGAKSKRR........
C1JAW8_9REOV/1-197             m-NSSVSHVGTITIAPDKDSEQIYKR..KKLQLPATLKINYIKDAKYRICACPSDSHSIDDCPLGGLPQSFVAHKTLWLSSLLHSSSTSANSRKAVLPRIKQSKFRLTDTSRKVksKSEDATKLERASEKQLEKKSKsseVQESSEESEGETSHSRLKRHQKSEKKGRKHDSK-STLSTEEVTKLVAA-ITTEA-----------------lskltrlk
NSP11_RDVF/9-189               .MTASESFVGMQVLAQDKEVKATFIAldRKLPAN--LKVPYMKNAKYRTCICPSSNHLVDDCVCEDVIIAYTAHRNNAVAALLYSDGNVIH-RSGTLKPKSQNRFDLRGFLTSV..NPGESSKAEAGTSKSTQKAY-...DRKDKSPSKGKNS-KKGGKKSSSERKRKEYSSN----SETDLSSDSDA-NTRK------------------skrk....
#=GC seq_cons                  .houSESaVGsQTLAPDKDuKplFct..RKLPusssLKVsYhKsAKYRTClCPSusHhlDDCPssDVlhSasAHRNhhluALLaSsossts.R+GsL+spsQs+FcLs-hhsKV..cSsDuoKAEsuo-KplEKuS+...sRcSSScS+G+sSaSRsGR+p+SE+Kp+EYSSc.ShhSEEElTcDssA.lT+Ks..................p+h....
//
DBGET integrated database retrieval system