GenomeNet

Database: Pfam
Entry: RC-P840_PscD
LinkDB: RC-P840_PscD
Original site: RC-P840_PscD 
#=GF ID   RC-P840_PscD
#=GF AC   PF10657.10
#=GF DE   Photosystem P840 reaction centre protein PscD
#=GF AU   FIGfams;
#=GF AU   Mistry J;0000-0003-2479-5322
#=GF AU   Coggill P;0000-0001-5731-1588
#=GF SE   FIG031038 (Release 2.0)
#=GF GA   23.50 23.50;
#=GF TC   24.10 114.80;
#=GF NC   23.00 22.00;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   11687219
#=GF RT   The reaction center of green sulfur bacteria(1). 
#=GF RA   Hauska G, Schoedl T, Remigy H, Tsiotis G; 
#=GF RL   Biochim Biophys Acta. 2001;1507:260-277.
#=GF DR   INTERPRO; IPR019608;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   The photosynthetic reaction centres (RCs) of aerotolerant
#=GF CC   organisms contain a heterodimeric core, built up of two strongly
#=GF CC   homologous polypeptides each of which contributes five
#=GF CC   transmembrane peptide helices to hold a pseudo-symmetric double
#=GF CC   set of redox components. Two molecules of PscD are housed within
#=GF CC   a subunit. PscD may be involved in stabilising the PscB
#=GF CC   component since it is found to co-precipitate with FMO
#=GF CC   (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be
#=GF CC   involved in the interaction with ferredoxin [1].
#=GF SQ   12
#=GS A1BET7_CHLPD/1-144      AC A1BET7.1
#=GS B3EKU0_CHLPB/1-161      AC B3EKU0.1
#=GS A0A1B1Q3F7_9CHLB/1-127  AC A0A1B1Q3F7.1
#=GS Q0YPZ4_9CHLB/20-163     AC Q0YPZ4.1
#=GS B4S6P6_PROA2/1-127      AC B4S6P6.1
#=GS Q3APD1_CHLCH/1-144      AC Q3APD1.1
#=GS B3QZ39_CHLT3/1-126      AC B3QZ39.1
#=GS A0A222SJP1_9CHLB/1-127  AC A0A222SJP1.1
#=GS A4SFB2_CHLPM/1-144      AC A4SFB2.1
#=GS B3EHQ9_CHLL2/1-144      AC B3EHQ9.1
#=GS B4SDA1_PELPB/1-144      AC B4SDA1.1
#=GS PSCD_CHLTE/1-143        AC Q8KEP5.1
A1BET7_CHLPD/1-144                 .....MQPQLSRPFTKDNQVR.................TSKSGPWSGNAAHKAEKYFITAAKRGKNDNLQLEISPASGRRKLSPTTEMINKIISGEIELFVLTTQPDIAINLAQKVLDNENRYVIDFDKRGVKWTMRDIPVFYDSLHRELCVEIDRRTYTLNEFFK
B3EKU0_CHLPB/1-161                 .....MLNPFFIYLSFTNLINrftihagvlifcnvntyTMQSAVWSGNALHKGLKYFITSAKRDRFGALQITISPASGRRKLSPTKEIIEQLKEGKIQLFILTTQPDIAVDLPQKVLDNENRYVIDFDNRGIKWTMRDIPVFFDNLRGQLCVEIDGVTYTLDQFFK
A0A1B1Q3F7_9CHLB/1-127             .....----------------.................-MHSAVWSGNALHKVTKYYITSAKRDNNGRLDITISPASGRTKLKPTEQFIRQLENKEVQLLVLTTQPDIALDLNKMVIDNENRYVIDFDKRGVKWTMRDLPVYYNTMKRELCVEVDGVCYTLDKFFK
Q0YPZ4_9CHLB/20-163                .....MRSQLSRPNTATNQVR.................VSTAGPWSGNAAHKTKKYYITTAKRDNYGKLQIQICPASGRRKLSPTPEIISKIISGEIELFVLTTQPDIGIDLKQKVLDNENRYVIDFDKRGIKWTMRDIPVFYDSLHQQLAVEIDRQVYTLDKFFK
B4S6P6_PROA2/1-127                 .....----------------.................-MQSAVWSGNALHKVTKYYITSAKRDRNGKLDITVSPASGRTNLKPTEKFIDQLKNGEIQLLVLTNQPDIALDMDKKVLDNENRYVIDFDKRGVKWTMRDLPVYFNTMKNTLCVEVDGVSYSLDSFFK
Q3APD1_CHLCH/1-144                 .....MQSTLSRPYTGNEQVR.................ANVAGPWSGNAAHKAEKYFITSAKRDDYGKLQLTISPASGRRKLLPTKEMIGKVASGEIELYVLTTQPDIGINLQQKVLDNENRYVIDFDNRGVKWTMRDIPVFYDSLRQQLCIEIDRRTYTLNEFFK
B3QZ39_CHLT3/1-126                 msiwr----------------.................-------TGNPVHKIDKYFITKAERDDYGRLNLTFASTGGYGQLTNIPEIKKLLKNHDIQVAVLSSNEDIAINLQEFVKSSEERYVTDFDGRGVRSTMREVQVFVNPNTDEMVVDINGRLYSLNEFFK
A0A222SJP1_9CHLB/1-127             .....----------------.................-MQSAVWSGNAVHKVAKYYITSAKRDRNGKLNVTIMPASGRRKLSPTRELIEQLQEGKIQLLVLTNQPDIAIDLEQKVLDNENRYVIDFDKRGVKWTMRDLPVFYDALRKQLCVEVDGISYTLDQFFK
A4SFB2_CHLPM/1-144                 .....MQQQLSRPFTAENQVR.................TSTSGPWSGNAVHKAEKYFITSAKRDQYNKLQLQICPAAGRRKLQPTEEMINKVMRGEIELTVLTTQPDIAINLEQKVLDNENRYVIDFDNRGVKWTMRDIPVFYSSMTRQLSVEIDRKTYTLNEFFK
B3EHQ9_CHLL2/1-144                 .....MQPQLSRPFTKDNQVR.................KSTSGPWSGNAVHKAEKYFITSAKRDRDDRLQLEIYPASGRRKLSPTREMIDKIISGEIELYVLTTQPDIAINLEQKVLDNENRYVIDFDKRGVKWTMRDIPVFYNSLDRQLSVEIDRRTYTLNEFFK
B4SDA1_PELPB/1-144                 .....MQPQLSRPNTGDNQVR.................VSTAGPWSGNAAHKAEKYFITSAKRDNRGNLQVQISPSSGRRKLSPTKVMIDKIISGEIELFVLTTQPDIGIDIKKKIIDNENRYVIDFDNRGIKWTMRDIPVFYSSLLRELCIEIDRRTYTLDEFFK
PSCD_CHLTE/1-143                   .....MQPQLSRPQTASNQVR.................KAVSGPWSGNAVHKAEKYFITSAKRDRDGKLQIELVPASGRRKLSPTPEMIRRLIDGEIEIYILTTQPDIAIDMNKEIIDMENRYVIDFDKRGVKWTMREIPVFYHEGKG-LCVELHNKIYTLDQFFK
#=GC seq_cons                      .....M...h.h..ohpp.lp.................h.pSusWSGNAlHKscKYFITSAKRDc.G+LQlpIsPASGRRKLoPTcEhIcplhsGEIpLhVLTTQPDIAIsLppKVLDNENRYVIDFDpRGVKWTMRDIPVFYsoh+ppLCVEIDtpoYTLscFFK
//
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