GenomeNet

Database: Pfam
Entry: RNA_pol_Rpb1_R
LinkDB: RNA_pol_Rpb1_R
Original site: RNA_pol_Rpb1_R 
#=GF ID   RNA_pol_Rpb1_R
#=GF AC   PF05001.15
#=GF DE   RNA polymerase Rpb1 C-terminal repeat 
#=GF AU   Finn RD;0000-0001-8626-2148
#=GF SE   Manual 
#=GF GA   20.30 6.20;
#=GF TC   20.30 6.20;
#=GF NC   20.10 6.10;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Repeat
#=GF RN   [1]
#=GF RM   12206456
#=GF RT   CTD phosphatase: role in RNA polymerase II cycling and the
#=GF RT   regulation of transcript elongation. 
#=GF RA   Lin PS, Marshall NF, Dahmus ME; 
#=GF RL   Prog Nucleic Acid Res Mol Biol 2002;72:333-365.
#=GF DR   INTERPRO; IPR000684;
#=GF DR   SO; 0001068; polypeptide_repeat;
#=GF CC   The repetitive C-terminal domain (CTD) of Rpb1 (RNA polymerase
#=GF CC   Pol II) plays a critical role in the regulation of gene
#=GF CC   expression. The activity of the CTD is dependent on its state of
#=GF CC   phosphorylation [1].
#=GF SQ   21342
#=GS A0A287D7H0_ICTTR/1739-1752  AC A0A287D7H0.1
#=GS A0A0N4Y6H7_NIPBR/1757-1770  AC A0A0N4Y6H7.1
#=GS U9SVU6_RHIID/1695-1707      AC U9SVU6.1
#=GS A0A1U8JQK0_GOSHI/1713-1726  AC A0A1U8JQK0.1
#=GS G8Y2U0_PICSO/1562-1575      AC G8Y2U0.1
#=GS A0A1X2HB15_SYNRA/1665-1678  AC A0A1X2HB15.1
#=GS A0A4Y7PK91_9AGAM/1620-1633  AC A0A4Y7PK91.1
#=GS A0A287JU51_HORVV/1397-1410  AC A0A287JU51.1
#=GS I3LJR4_PIG/1920-1932        AC I3LJR4.3
#=GS A0A088AA87_APIME/273-286    AC A0A088AA87.1
#=GS A0A5N7AQU1_9EURO/1574-1584  AC A0A5N7AQU1.1
#=GS A0A0U5GXS8_9EURO/1601-1612  AC A0A0U5GXS8.1
#=GS N1PVU3_DOTSN/1676-1689      AC N1PVU3.1
#=GS A0A2Y9HEK3_NEOSC/1770-1783  AC A0A2Y9HEK3.1
#=GS G0V8Z9_NAUCC/1567-1580      AC G0V8Z9.1
#=GS J3KAX7_COCIM/1690-1705      AC J3KAX7.2
#=GS A0A3P7JP88_STRVU/15-28      AC A0A3P7JP88.1
#=GS A0A443SJJ7_9ACAR/1675-1688  AC A0A443SJJ7.1
#=GS A0A5N5TK39_9CRUS/1689-1702  AC A0A5N5TK39.1
#=GS A0A022RPD5_ERYGU/1581-1594  AC A0A022RPD5.1
#=GS A0A1R3L742_ASPOF/1559-1572  AC A0A1R3L742.1
#=GS A0A167WNA9_9EURO/1701-1715  AC A0A167WNA9.1
#=GS A0A2Y9HWT8_NEOSC/578-590    AC A0A2Y9HWT8.1
#=GS B2W4S0_PYRTR/1711-1726      AC B2W4S0.1
#=GS A0A310S7L0_9HYME/414-427    AC A0A310S7L0.1
#=GS A0A314Z8L7_PRUYE/1593-1606  AC A0A314Z8L7.1
#=GS A0A367J9R2_RHIAZ/1557-1570  AC A0A367J9R2.1
#=GS A0A250X4B1_9CHLO/1659-1672  AC A0A250X4B1.1
#=GS E4WV65_OIKDI/875-888        AC E4WV65.1
#=GS G3AI95_SPAPN/1572-1585      AC G3AI95.1
#=GS A0A074XHQ8_AURPU/1645-1657  AC A0A074XHQ8.1
#=GS A0A2Y9DK20_TRIMA/1840-1853  AC A0A2Y9DK20.1
#=GS A0A0D7B5A7_9AGAR/1639-1652  AC A0A0D7B5A7.1
#=GS A0A2P6MUU8_9EUKA/1672-1685  AC A0A2P6MUU8.1
#=GS A0A665W0P6_ECHNA/1887-1900  AC A0A665W0P6.1
#=GS A0A0K8LLT9_9EURO/1645-1658  AC A0A0K8LLT9.1
#=GS A0A195AWI3_9HYME/1622-1635  AC A0A195AWI3.1
#=GS F0UGB6_AJEC8/1644-1657      AC F0UGB6.1
#=GS A0A3Q1EK91_9TELE/1740-1753  AC A0A3Q1EK91.1
#=GS A0A2U9R253_PICKU/1653-1666  AC A0A2U9R253.1
#=GS G3GV39_CRIGR/17-35          AC G3GV39.1
#=GS A0A0L7LRG9_9NEOP/1599-1612  AC A0A0L7LRG9.1
#=GS A0A2K6P1H0_RHIRO/1789-1802  AC A0A2K6P1H0.1
#=GS A0A072P907_9EURO/1603-1616  AC A0A072P907.1
#=GS A0A2R9CMR6_PANPA/1781-1794  AC A0A2R9CMR6.1
#=GS A0A2Y9HEK3_NEOSC/1721-1734  AC A0A2Y9HEK3.1
#=GS A0A1J8Q0F6_9AGAM/181-194    AC A0A1J8Q0F6.1
#=GS A0A096P2Q6_PAPAN/1615-1628  AC A0A096P2Q6.2
#=GS A0A3L6PSS1_PANMI/1608-1621  AC A0A3L6PSS1.1
#=GS A0A287STE1_HORVV/251-264    AC A0A287STE1.1
#=GS W2PCU8_PHYPN/1674-1687      AC W2PCU8.1
#=GS A0A1X2HB15_SYNRA/1721-1734  AC A0A1X2HB15.1
#=GS A0A0E0I7C8_ORYNI/1670-1683  AC A0A0E0I7C8.1
#=GS A0A0K9R2D2_SPIOL/230-244    AC A0A0K9R2D2.1
#=GS A0A2T2NL26_CORCC/75-88      AC A0A2T2NL26.1
#=GS F2UIP5_SALR5/1716-1729      AC F2UIP5.1
#=GS A0A4C1ZTL3_EUMVA/1791-1804  AC A0A4C1ZTL3.1
#=GS U6JZK6_9EIME/216-233        AC U6JZK6.1
#=GS K5XJ33_AGABU/1648-1661      AC K5XJ33.1
#=GS A0A2K6RYW9_SAIBB/1809-1822  AC A0A2K6RYW9.1
#=GS A0A0L7QQG3_9HYME/479-492    AC A0A0L7QQG3.1
#=GS V4SDF7_9ROSI/1691-1704      AC V4SDF7.1
#=GS A0A0D8XSQ9_DICVI/2041-2054  AC A0A0D8XSQ9.1
#=GS R9NXG0_PSEHS/1591-1602      AC R9NXG0.1
#=GS B7PJA3_IXOSC/1699-1712      AC B7PJA3.1
#=GS B7G9I2_PHATC/1581-1594      AC B7G9I2.1
#=GS H2Z9E4_CIOSA/1542-1555      AC H2Z9E4.1
#=GS A0A251M2B5_MANES/1677-1690  AC A0A251M2B5.1
#=GS A0A0B1T7V6_OESDE/847-859    AC A0A0B1T7V6.1
#=GS A0A3P9PCM4_POERE/1835-1848  AC A0A3P9PCM4.1
#=GS A0A0K9R2D2_SPIOL/246-258    AC A0A0K9R2D2.1
#=GS A0A3N0XN48_ANAGA/1690-1703  AC A0A3N0XN48.1
#=GS A0A446YHK8_TRITD/1472-1485  AC A0A446YHK8.1
#=GS A0A1X7QYK3_9SACH/1539-1550  AC A0A1X7QYK3.1
#=GS E4Y3D7_OIKDI/69-82          AC E4Y3D7.1
#=GS A0A3A2Z5D6_9EURO/1644-1657  AC A0A3A2Z5D6.1
#=GS A0A1S2ZNJ1_ERIEU/1700-1713  AC A0A1S2ZNJ1.1
#=GS H2Z9E4_CIOSA/1570-1583      AC H2Z9E4.1
#=GS A0A485KVT6_9STRA/1814-1827  AC A0A485KVT6.1
#=GS A0A0M3K3X8_ANISI/1619-1632  AC A0A0M3K3X8.1
#=GS A0A0R4IMS9_DANRE/1690-1703  AC A0A0R4IMS9.1
#=GS W9Y2I4_9EURO/1695-1708      AC W9Y2I4.1
#=GS A0A507ECU3_9FUNG/1545-1558  AC A0A507ECU3.1
#=GS A0A2Y9Q0V5_DELLE/1758-1771  AC A0A2Y9Q0V5.1
#=GS A0A016TT33_9BILA/1732-1745  AC A0A016TT33.1
#=GS G3VJ85_SARHA/1892-1905      AC G3VJ85.1
#=GS A2QAT7_ASPNC/1690-1702      AC A2QAT7.1
#=GS A0A2H9TR04_9FUNG/1566-1579  AC A0A2H9TR04.1
#=GS H3GA78_PHYRM/1710-1723      AC H3GA78.1
#=GS A0A4S4LFH0_9AGAM/1933-1951  AC A0A4S4LFH0.1
#=GS A0A5N6Z7W7_9EURO/1660-1673  AC A0A5N6Z7W7.1
#=GS A0A2Y9DK20_TRIMA/1784-1797  AC A0A2Y9DK20.1
#=GS S8CQC3_9LAMI/919-932        AC S8CQC3.1
#=GS A0A453MB19_AEGTS/1160-1173  AC A0A453MB19.1
#=GS A0A2K5KUB8_CERAT/1917-1930  AC A0A2K5KUB8.1
#=GS A0A446XHT6_TRITD/1598-1611  AC A0A446XHT6.1
#=GS A0A061DGE8_THECC/1622-1635  AC A0A061DGE8.1
#=GS A0A3P9D2C4_9CICH/1747-1760  AC A0A3P9D2C4.1
#=GS A0A5A7P7J4_STRAF/1705-1718  AC A0A5A7P7J4.1
#=GS A0A165PZM7_9APHY/1620-1633  AC A0A165PZM7.1
#=GS U4U4W4_DENPD/1650-1663      AC U4U4W4.1
#=GS F7BQD0_MACMU/99-111         AC F7BQD0.3
#=GS H2Z9E5_CIOSA/1519-1532      AC H2Z9E5.1
#=GS A0A3N4LJJ0_9PEZI/1614-1627  AC A0A3N4LJJ0.1
#=GS A0A2K6P1E5_RHIRO/1672-1685  AC A0A2K6P1E5.1
#=GS A0A3B6TSH3_WHEAT/1677-1690  AC A0A3B6TSH3.1
#=GS A0A1G4JPQ1_9SACH/1601-1614  AC A0A1G4JPQ1.1
#=GS A0A0R4J0V5_MOUSE/1690-1703  AC A0A0R4J0V5.1
#=GS A0A3Q3KUK0_9TELE/1592-1604  AC A0A3Q3KUK0.1
#=GS D8LRY3_ECTSI/1757-1770      AC D8LRY3.1
#=GS A0A0E9NAC8_SAICN/1706-1719  AC A0A0E9NAC8.1
#=GS D0P371_PHYIT/1646-1659      AC D0P371.1
#=GS A0A199UUT7_ANACO/1636-1649  AC A0A199UUT7.1
#=GS A0A4C1ZTL3_EUMVA/1839-1852  AC A0A4C1ZTL3.1
#=GS A0A2K5YAY0_MANLE/1817-1830  AC A0A2K5YAY0.1
#=GS A0A0D2GUJ4_9EURO/1654-1666  AC A0A0D2GUJ4.1
#=GS A0A2G5UBX7_9PELO/1732-1745  AC A0A2G5UBX7.1
#=GS A0A6G1CJQ2_9ORYZ/1677-1690  AC A0A6G1CJQ2.1
#=GS A0A2B7Z4I8_9EURO/1645-1658  AC A0A2B7Z4I8.1
#=GS A0A151THU7_CAJCA/1170-1183  AC A0A151THU7.1
#=GS F0ZE84_DICPU/1615-1628      AC F0ZE84.1
#=GS A0A0R4IMS9_DANRE/1613-1626  AC A0A0R4IMS9.1
#=GS A0A167WNA9_9EURO/1581-1596  AC A0A167WNA9.1
#=GS A0A671VS92_SPAAU/1670-1683  AC A0A671VS92.1
#=GS A0A437A7F3_9PEZI/1643-1659  AC A0A437A7F3.1
#=GS A0A2K6DF48_MACNE/1760-1773  AC A0A2K6DF48.1
#=GS A0A446XHV4_TRITD/1778-1791  AC A0A446XHV4.1
#=GS A0A5B7FIW6_PORTR/1160-1173  AC A0A5B7FIW6.1
#=GS A0A673D141_9TELE/1701-1714  AC A0A673D141.1
#=GS A0A453DLI9_AEGTS/42-55      AC A0A453DLI9.1
#=GS A0A1V6NDQ8_9EURO/1625-1638  AC A0A1V6NDQ8.1
#=GS A0A1F8AF07_9EURO/1574-1584  AC A0A1F8AF07.1
#=GS I3LYD0_ICTTR/1700-1713      AC I3LYD0.2
#=GS A0A1R3L742_ASPOF/1537-1551  AC A0A1R3L742.1
#=GS D6WRF4_TRICA/1721-1734      AC D6WRF4.1
#=GS A0A061DGE8_THECC/1706-1719  AC A0A061DGE8.1
#=GS A0A6G0V624_9BILA/1779-1792  AC A0A6G0V624.1
#=GS M5VSC7_PRUPE/1773-1786      AC M5VSC7.1
#=GS A0A5N5TK39_9CRUS/1675-1688  AC A0A5N5TK39.1
#=GS Q6FQS9_CANGA/1621-1634      AC Q6FQS9.1
#=GS R7VH83_CAPTE/1693-1706      AC R7VH83.1
#=GS A0A1S2ZNJ1_ERIEU/1770-1783  AC A0A1S2ZNJ1.1
#=GS A0A1U7TRU6_CARSF/1848-1861  AC A0A1U7TRU6.1
#=GS A0A319DU84_ASPSB/1601-1612  AC A0A319DU84.1
#=GS A0A559M4S1_9HELO/1297-1309  AC A0A559M4S1.1
#=GS A8Q5I6_MALGO/1515-1528      AC A8Q5I6.1
#=GS A0A2B7X6Y2_9EURO/1672-1692  AC A0A2B7X6Y2.1
#=GS W6MGR1_9ASCO/1671-1684      AC W6MGR1.1
#=GS A0A446XI99_TRITD/1691-1704  AC A0A446XI99.1
#=GS A0A670J0M1_PODMU/1657-1670  AC A0A670J0M1.1
#=GS A0A3Q2VW95_HAPBU/1576-1589  AC A0A3Q2VW95.1
#=GS A0A3Q1J6U5_ANATE/1864-1876  AC A0A3Q1J6U5.1
#=GS H2Z9D8_CIOSA/1643-1656      AC H2Z9D8.1
#=GS A0A443SJJ7_9ACAR/1864-1877  AC A0A443SJJ7.1
#=GS A0A164NU33_9CRUS/196-209    AC A0A164NU33.1
#=GS A0A0C9LWV8_9FUNG/1586-1599  AC A0A0C9LWV8.1
#=GS A0A4Z1PFV5_9PEZI/1707-1720  AC A0A4Z1PFV5.1
#=GS A0A446YHA2_TRITD/1656-1669  AC A0A446YHA2.1
#=GS A0A446YH82_TRITD/1474-1487  AC A0A446YH82.1
#=GS A0A0A0L655_CUCSA/1593-1606  AC A0A0A0L655.1
#=GS A0A3Q4I7E6_NEOBR/99-112     AC A0A3Q4I7E6.1
#=GS A0A2N5W569_9BASI/1589-1609  AC A0A2N5W569.1
#=GS U5GEY7_POPTR/1695-1708      AC U5GEY7.1
#=GS A0A229YV31_9EURO/1721-1740  AC A0A229YV31.1
#=GS A0A5C3EVZ4_9BASI/1708-1721  AC A0A5C3EVZ4.1
#=GS A0A367J9R2_RHIAZ/1551-1563  AC A0A367J9R2.1
#=GS A0A1S8VTW7_9FUNG/1619-1632  AC A0A1S8VTW7.1
#=GS A0A3S1BJG9_ELYCH/1752-1765  AC A0A3S1BJG9.1
#=GS A0A559M4S1_9HELO/1346-1359  AC A0A559M4S1.1
#=GS RPB1_DICDI/1673-1686        AC P35084.2
#=GS A0A3Q1JBX8_ANATE/1592-1604  AC A0A3Q1JBX8.1
#=GS A0A453MB19_AEGTS/1174-1187  AC A0A453MB19.1
#=GS A0A3A2Z5D6_9EURO/1658-1671  AC A0A3A2Z5D6.1
#=GS A0A498LS48_LABRO/1786-1799  AC A0A498LS48.1
#=GS A0A1Q3E6A4_LENED/1620-1633  AC A0A1Q3E6A4.1
#=GS A0A452RK12_URSAM/1626-1639  AC A0A452RK12.1
#=GS A0A1E3HR00_9TREE/1600-1613  AC A0A1E3HR00.1
#=GS W7HVE0_9PEZI/1660-1673      AC W7HVE0.1
#=GS A0A1R0H0T4_9FUNG/1625-1638  AC A0A1R0H0T4.1
#=GS A0A1R3L742_ASPOF/1650-1663  AC A0A1R3L742.1
#=GS H2Z9E4_CIOSA/1619-1632      AC H2Z9E4.1
#=GS A0A2H5PNA8_CITUN/1555-1568  AC A0A2H5PNA8.1
#=GS A0A498KFH1_MALDO/1181-1194  AC A0A498KFH1.1
#=GS J7S636_KAZNA/1634-1647      AC J7S636.1
#=GS A0A3P8UTQ2_CYNSE/1649-1662  AC A0A3P8UTQ2.1
#=GS B2W4S0_PYRTR/1621-1633      AC B2W4S0.1
#=GS A0A317WQF3_9EURO/1672-1691  AC A0A317WQF3.1
#=GS W6YD88_COCCA/1616-1628      AC W6YD88.1
#=GS A0A164NU33_9CRUS/287-300    AC A0A164NU33.1
#=GS A0A2P6MUU8_9EUKA/1602-1615  AC A0A2P6MUU8.1
#=GS W7LW88_GIBM7/1440-1455      AC W7LW88.1
#=GS A0A4W2C6F6_BOBOX/1966-1979  AC A0A4W2C6F6.1
#=GS A0A2K6GIB5_PROCO/1652-1665  AC A0A2K6GIB5.1
#=GS A5E6J4_LODEL/1667-1680      AC A5E6J4.1
#=GS A0A165FIC5_9APHY/1602-1615  AC A0A165FIC5.1
#=GS G1XDW8_ARTOA/1707-1721      AC G1XDW8.1
#=GS A0A0E0I7C8_ORYNI/1649-1662  AC A0A0E0I7C8.1
#=GS A0A2H3SSX1_FUSOX/1661-1673  AC A0A2H3SSX1.1
#=GS A0A6A6MFB5_HEVBR/237-250    AC A0A6A6MFB5.1
#=GS A0A1V6PPC3_PENDC/1675-1687  AC A0A1V6PPC3.1
#=GS A0A674ED39_SALTR/1900-1912  AC A0A674ED39.1
#=GS A0A384BUR6_URSMA/1648-1661  AC A0A384BUR6.1
#=GS A0A1S7HQ48_9SACH/1658-1671  AC A0A1S7HQ48.1
#=GS A0A4T0X0F9_9ASCO/1705-1718  AC A0A4T0X0F9.1
#=GS A0A1E3HQZ9_9TREE/1587-1600  AC A0A1E3HQZ9.1
#=GS A0A1E3PRZ2_9ASCO/1611-1624  AC A0A1E3PRZ2.1
#=GS A0A2K6RYW9_SAIBB/1732-1745  AC A0A2K6RYW9.1
#=GS A0A158PKQ7_ANGCS/1250-1263  AC A0A158PKQ7.1
#=GS A0A2P5BMB9_PARAD/1083-1096  AC A0A2P5BMB9.1
#=GS A0A199UUT7_ANACO/1594-1607  AC A0A199UUT7.1
#=GS V7CLS7_PHAVU/1663-1676      AC V7CLS7.1
#=GS A0A316WA69_9BASI/1677-1690  AC A0A316WA69.1
#=GS A0A341BNA4_NEOAA/1742-1755  AC A0A341BNA4.1
#=GS A0A671VS92_SPAAU/1761-1774  AC A0A671VS92.1
#=GS A0A2A9NJ26_9AGAR/1616-1627  AC A0A2A9NJ26.1
#=GS A0A446XHU8_TRITD/1406-1419  AC A0A446XHU8.1
#=GS A0A1S3ISH6_LINUN/1651-1664  AC A0A1S3ISH6.1
#=GS A0A5D6XH25_9STRA/2260-2273  AC A0A5D6XH25.1
#=GS A0A341BNA4_NEOAA/1924-1936  AC A0A341BNA4.1
#=GS A0A2K5YAX4_MANLE/1582-1595  AC A0A2K5YAX4.1
#=GS A0A446XIB8_TRITD/1591-1604  AC A0A446XIB8.1
#=GS A0A674BGW7_SALTR/1671-1684  AC A0A674BGW7.1
#=GS A0A372R502_9GLOM/1722-1734  AC A0A372R502.1
#=GS H2Z9E3_CIOSA/1683-1696      AC H2Z9E3.1
#=GS C0NEY2_AJECG/1177-1189      AC C0NEY2.1
#=GS A0A446XHW2_TRITD/1561-1574  AC A0A446XHW2.1
#=GS A0A2G2XG60_CAPBA/1675-1688  AC A0A2G2XG60.1
#=GS A0A2K3CV27_CHLRE/1700-1713  AC A0A2K3CV27.1
#=GS A0A662XK15_9STRA/558-571    AC A0A662XK15.1
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