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Database: Pfam
Entry: SSP160
LinkDB: SSP160
Original site: SSP160 
#=GF ID   SSP160
#=GF AC   PF06933.11
#=GF DE   Special lobe-specific silk protein SSP160
#=GF AU   Moxon SJ;0000-0003-4644-1816
#=GF SE   Pfam-B_14947 (release 10.0)
#=GF GA   25.00 25.00;
#=GF TC   25.80 25.10;
#=GF NC   24.90 24.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 45638612 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   8621663
#=GF RT   A cell-specific glycosylated silk protein from Chironomus thummi
#=GF RT   salivary glands. Cloning, chromosomal localization, and
#=GF RT   characterization of cDNA. 
#=GF RA   Hoffman RT, Schmidt ER, Case ST; 
#=GF RL   J Biol Chem 1996;271:9809-9815.
#=GF RN   [2]
#=GF RM   9858763
#=GF RT   Structure and polymorphism of the Chironomus thummi gene
#=GF RT   encoding special lobe-specific silk protein, ssp160. 
#=GF RA   Berezikov E, Blinov AG, Scherbik S, Cox CK, Case ST; 
#=GF RL   Gene 1998;223:347-354.
#=GF DR   INTERPRO; IPR009701;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family consists of several special lobe-specific silk
#=GF CC   protein SSP160 sequences which appear to be specific to
#=GF CC   Chironomus (Midge) species [1,2].
#=GF SQ   3
#=GS F2UJD4_SALR5/248-337      AC F2UJD4.1
#=GS U6GC22_EIMAC/194-378      AC U6GC22.1
#=GS A0A1J1IX34_9DIPT/167-612  AC A0A1J1IX34.1
F2UJD4_SALR5/248-337                 ...............................lhshgpltv---------------------------------------------------------------------------------------------------------------------..---...---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.---------------..----------------------..--------------------------------.------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VAPHLAVPPDCRSVESSHAGQRLRSLDDSAPVWMLADDAQHICSALGALPLDTiAATTTTTATTSTTTTTAAPF-----------------------------------------------------------glagssp....
U6GC22_EIMAC/194-378                 vlffkrdlkvlspfkafvvllqrlllqqpfdevgvvlqqh-------------------------------------------------QQRFVVSVHPNGGLSCIPYAAKLSGDSFLLVCCKRLKCSNALRKNIQNILLHACSSSSSSSSSGSSSSgsSDGsiySSNSSSTTNSSSSTTTTTNSS-SSNSNNNSS-SSSSSSSSENGVNLCFASSRVSIIYTIA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.---------------..----------------------..--------------------------------.-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.-------------------------------------------------------------------------------aellqrwgfls
A0A1J1IX34_9DIPT/167-612             ..........................tssnnigcqakvvi---------------------------------------------------------------------------------------------------------------------..---...----------------------------------------------------------------------------------------------------------------------------------------AIIASLTNDIENVLSDFEDYETDTSADIDVSCQNLATSEAVTSQLSSIRNAIQSYVDNNSEGVLIEIIASNLAQEFDSAVASLQTLIDNMMTCSDTLTGSLSSNHVKIFSGCDEDSTYPeLCDVGGTKYTERLNRnvIRYTNFIRRRAVQVR-ETRLTRfeENAATAVELFSSIFSFIRTSFNRVRGIFSFGIkINALNLQSKLV-KLLDTYSSVISNTIPSITSILEETEQEVENIQKSTSFDFYKRTNNFIEEIITNSNDYPCCNEYAQSTVELQAKFASEFSDCIKESYNVWNELAYNVTLQLARSGERFNEIDVALDKCIRLRCDKVQC-LNQYIA-RRDST-KIINCIYGVVKSTYGVQDMM---YLEGNFTIDGLRANSSIAISEAQECSNAAVEAADTELEEIKAAYEDCKVNRWCDAMA.TTTTT--------------------------------------------------------------------------paprafsc...
#=GC seq_cons                        ..........................pps.slsupuhlsl...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................shsh.ul.sssp.s.Sptttpp.tul-suss.h..hcsA.c.Cps.thhsh.s.ssTTT..........................................................................utstupss...
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