GenomeNet

Database: Pfam
Entry: Spidroin_MaSp
LinkDB: Spidroin_MaSp
Original site: Spidroin_MaSp 
#=GF ID   Spidroin_MaSp
#=GF AC   PF11260.9
#=GF DE   Major ampullate spidroin 1 and 2
#=GF AU   Pollington J;0000-0002-8158-8998
#=GF AU   Finn RD;0000-0001-8626-2148
#=GF SE   Pfam-B_001419 (release 23.0)
#=GF GA   25.00 25.00;
#=GF TC   51.60 51.60;
#=GF NC   22.10 19.30;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   16283740
#=GF RT   Analysis of the conserved N-terminal domains in major ampullate
#=GF RT   spider silk proteins. 
#=GF RA   Motriuk-Smith D, Smith A, Hayashi CY, Lewis RV; 
#=GF RL   Biomacromolecules. 2005;6:3152-3159.
#=GF RN   [2]
#=GF RM   17096540
#=GF RT   N-terminal nonrepetitive domain common to dragline,
#=GF RT   flagelliform, and cylindriform spider silk proteins. 
#=GF RA   Rising A, Hjalm G, Engstrom W, Johansson J; 
#=GF RL   Biomacromolecules. 2006;7:3120-3124.
#=GF DR   INTERPRO; IPR021001;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   Dragline silk is composed of two proteins, major ampullate
#=GF CC   spidroin 1 (MaSp1) and major ampullate spidroin 2 (MaSp2) [1].
#=GF CC   MaSp1 contains five alpha-helices [2]. Only the C-terminus of
#=GF CC   the proteins are shown.
#=GF SQ   4
#=GS A0A087URD1_9ARAC/4126-4211  AC A0A087URD1.1
#=GS A0A087T695_9ARAC/254-331    AC A0A087T695.1
#=GS A0A087UC47_9ARAC/396-480    AC A0A087UC47.1
#=GS A0A087UPM4_9ARAC/1873-1957  AC A0A087UPM4.1
A0A087URD1_9ARAC/4126-4211             tlp---AALRSPDVTSRVNSLTSSIVSSi..gpKGVDMNAFGSKLVANISNMLNS--GASSSEAVVETLIETIAALLQVVSSAQIRSVNTSS-t.
A0A087T695_9ARAC/254-331               svl---SILSSSESEKRIASLISVIISSlpapgGKFDYLTFARGLASLLSDIRAGNPSYSASDVITEGLLEALVAFIQM--------------ee
A0A087UC47_9ARAC/396-480               ..s-TISRLSSSSSSSRISSAASVLASG.....GTFNANALSSVISDLAAQVRSTSDTLSGCEVLVQVLLEVVSALVHILNSSNIGQIDLTSV..
A0A087UPM4_9ARAC/1873-1957             ..s-TTSRLSSASSSSRISSAASALTDG.....GYVNTYALPSIISDLSSQVRASSADLSGCEVLVQVLLEIVSALVHVLNYANIGEIDFNS-l.
#=GC seq_cons                          ..s...StLSSusSoSRIuShsSslsSu.....Gthsh.AhuShlusLhSplRuossshSusEVlVpsLLEsluALlplls.upItplshsS...
//
DBGET integrated database retrieval system