GenomeNet

Database: Pfam
Entry: SpvD
LinkDB: SpvD
Original site: SpvD 
#=GF ID   SpvD
#=GF AC   PF05563.16
#=GF DE   Salmonella plasmid virulence protein SpvD
#=GF PI   Sal_SpvD; 
#=GF AU   Moxon SJ;0000-0003-4644-1816
#=GF SE   Pfam-B_7864 (release 8.0)
#=GF GA   25.00 25.00;
#=GF TC   498.90 498.70;
#=GF NC   23.10 18.80;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 75585367 --cpu 4 -E 1000 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   11570190
#=GF RT   Sequence polymorphism of the Salmonella plasmid virulence factor
#=GF RT   D (SpvD) in Salmonella enterica isolates of animal origin. 
#=GF RA   Bauerfeind R, Barth S, Weiss R, Baljer G; 
#=GF RL   Berl Munch Tierarztl Wochenschr 2001;114:404-408.
#=GF RN   [2]
#=GF RM   27789710
#=GF RT   The Salmonella Effector SpvD Is a Cysteine Hydrolase with a
#=GF RT   Serovar-specific Polymorphism Influencing Catalytic Activity,
#=GF RT   Suppression of Immune Responses, and Bacterial Virulence.
#=GF RA   Grabe GJ, Zhang Y, Przydacz M, Rolhion N, Yang Y, Pruneda JN,
#=GF RA   Komander D, Holden DW, Hare SA;
#=GF RL   J Biol Chem. 2016;291:25853-25863.
#=GF DR   INTERPRO; IPR008834;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family consists of several SpvD plasmid virulence proteins
#=GF CC   from different Salmonella species [1].The structure of the
#=GF CC   protein from Salmonella typhimurium has been solved and shows a
#=GF CC   papain-like fold, with a predicted catalytic triad of Cys73,
#=GF CC   His162 and Asp182. The protein has been shown to have
#=GF CC   deubiquitinating-like activity, releasing aminoluciferin (AML)
#=GF CC   from Ub-AML [2].
#=GF SQ   1
#=GS VSDE_SALTY/1-212  AC P0A2N2.1
VSDE_SALTY/1-212             MRVSGSASSQDIISRINSKNINNNDSNEVKRIKDALCIESKERILYPQNLSRDNLKQMARYVNNTYVHYSGNCVLLSACLHYNIHHRQDILSSKNTASPTVGLDSAIVDKIIFGHELNQSYCLNSIDEVEKEILNRYDIKRESSFIISAENYIAPIIGECRHDFNAVVICEYDKKPYVQFIDSWKTSNILPSLQEIKKHFSSSGEFYVRAYD
#=GC seq_cons                MRVSGSASSQDIISRINSKNINNNDSNEVKRIKDALCIESKERILYPQNLSRDNLKQMARYVNNTYVHYSGNCVLLSACLHYNIHHRQDILSSKNTASPTVGLDSAIVDKIIFGHELNQSYCLNSIDEVEKEILNRYDIKRESSFIISAENYIAPIIGECRHDFNAVVICEYDKKPYVQFIDSWKTSNILPSLQEIKKHFSSSGEFYVRAYD
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