GenomeNet

Database: Pfam
Entry: TraD_N
LinkDB: TraD_N
Original site: TraD_N 
#=GF ID   TraD_N
#=GF AC   PF12615.10
#=GF DE   F sex factor protein N terminal
#=GF AU   Gavin OL;
#=GF SE   Prosite
#=GF GA   25.00 25.00;
#=GF TC   25.90 25.20;
#=GF NC   24.30 22.70;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   2680768
#=GF RT   Nucleotide sequence of the traD region in the Escherichia coli F
#=GF RT   sex factor.
#=GF RA   Jalajakumari MB, Manning PA;
#=GF RL   Gene. 1989;81:195-202.
#=GF DR   INTERPRO; IPR022585;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This domain family is found in bacteria, and is typically
#=GF CC   between 96 and 107 amino acids in length. The family is found in
#=GF CC   association with Pfam:PF10412. TraD is a cytoplasmic membrane
#=GF CC   protein with possible DNA binding domains. It is part of the
#=GF CC   bacterial F sex factor complex.
#=GF SQ   43
#=GS W0BF53_9GAMM/34-126       AC W0BF53.1
#=GS A0A3S1D2T5_9GAMM/12-104   AC A0A3S1D2T5.1
#=GS A0A653CIP1_CALMS/31-128   AC A0A653CIP1.1
#=GS A0A1I5BAE3_9ENTR/32-128   AC A0A1I5BAE3.1
#=GS A0A378BVW9_KLEPR/32-128   AC A0A378BVW9.1
#=GS A0A0F3MKF7_9RICK/29-120   AC A0A0F3MKF7.1
#=GS Q1RJG0_RICBR/28-136       AC Q1RJG0.1
#=GS A0A1E7YYN0_9GAMM/32-128   AC A0A1E7YYN0.1
#=GS A0A2A2GQD2_9GAMM/32-129   AC A0A2A2GQD2.1
#=GS Q6LW78_PHOPR/35-128       AC Q6LW78.1
#=GS A0A2V1HBW5_9GAMM/29-128   AC A0A2V1HBW5.1
#=GS A0A0H3GZJ9_KLEPH/32-128   AC A0A0H3GZJ9.1
#=GS A0A0J8YDS2_9GAMM/32-136   AC A0A0J8YDS2.1
#=GS H3RL87_PANSE/31-128       AC H3RL87.1
#=GS H8K2H5_RICAG/28-136       AC H8K2H5.1
#=GS A0A0J8Y9G8_9ENTR/32-136   AC A0A0J8Y9G8.1
#=GS A0A0F3MPM7_9RICK/29-109   AC A0A0F3MPM7.1
#=GS D2U4N8_9GAMM/32-129       AC D2U4N8.1
#=GS D4EA28_SEROD/32-131       AC D4EA28.1
#=GS R9VU44_9ENTR/32-136       AC R9VU44.1
#=GS A0A653CJ95_CALMS/1-60     AC A0A653CJ95.1
#=GS A0A6I4L7B5_9ENTR/32-128   AC A0A6I4L7B5.1
#=GS A6TIJ1_KLEP7/32-128       AC A6TIJ1.1
#=GS A0A377YVY0_KLEPO/32-128   AC A0A377YVY0.1
#=GS Q93GL8_SALTY/32-128       AC Q93GL8.1
#=GS A0A2A7U856_EDWTA/32-128   AC A0A2A7U856.1
#=GS G2H1R5_9ENTR/32-130       AC G2H1R5.1
#=GS A0A085FZ03_9ENTR/32-136   AC A0A085FZ03.1
#=GS A0A1Y3ASG8_EURMA/141-240  AC A0A1Y3ASG8.1
#=GS A0A077ZG65_TRITR/32-128   AC A0A077ZG65.1
#=GS A0A0M2K3W1_9GAMM/32-128   AC A0A0M2K3W1.1
#=GS J2DEY8_KLEPN/32-128       AC J2DEY8.1
#=GS A0A078KYH4_9GAMM/34-126   AC A0A078KYH4.1
#=GS A5CC23_ORITB/30-137       AC A5CC23.1
#=GS A0A0F3MJM2_9RICK/29-78    AC A0A0F3MJM2.1
#=GS W1EBN3_KLEPN/32-128       AC W1EBN3.1
#=GS A0A378JR59_9GAMM/34-126   AC A0A378JR59.1
#=GS A0A0A3YMC1_9GAMM/31-128   AC A0A0A3YMC1.1
#=GS A0A0F3MIU4_9RICK/29-136   AC A0A0F3MIU4.1
#=GS A0A514F069_9ENTR/32-128   AC A0A514F069.1
#=GS W1DNB1_KLEPN/12-108       AC W1DNB1.1
#=GS A4WGU5_ENT38/19-123       AC A4WGU5.1
#=GS A0A378P2U8_9GAMM/34-126   AC A0A378P2U8.1
W0BF53_9GAMM/34-126                  ...VCLFLWVVLTGLITWLVTSPEKFYQAIAY----Y.YAS.FLNLV..GQ..kHTFTLhf......hgKNYQQNVDVILHYPYYKENATHMV.................DLLGKSSLAAFVLSFVLGL......
A0A3S1D2T5_9GAMM/12-104              ..i-CLFLWLVFTGVIAFWVTSYEQLHQAIAY----Y.YAL.FLNLV..GQ..kHTFTVpf......hgKEYRQSVESILHYSYFKSNADHTV.................TLLGRSALAGFFIAFFLG-i.....
A0A653CIP1_CALMS/31-128              ..yCLVILFGIIVAITLSVKLTWQTFVNGMVYYWCQT.LAP.MRDIF..KS..qPVYTIry......ygHELKYNAQQILQDKYIQWCADQVW.................TAFILASIIAAVVCVITFF......
A0A1I5BAE3_9ENTR/32-128              ..y-VFLGWLGLLSFIVYIRLNTQTFLNGLVYWWSHT.LIP.FGSII..RK..pPVYPVry......ygNTLYYTYDKILTDKYTAWCGITLR.................NELILSGLFASIITFIV--vi....
A0A378BVW9_KLEPR/32-128              ...VLFILFWVLCGLMLMYRLSWQTFVNGCVYWWCTT.LGP.MRDII..RS..qPVYTIqy......ygQSLEYTSEQILADKYTIWCGEQLW.................TSFVFAAVVSLVICIVTFF......
A0A0F3MKF7_9RICK/29-120              ...NVLTIGFGLSIFWILWRLYQKLFLSSLYYFAIER.YVQ.LKLAI..GE...HFYDI..........DEIGIKFYSLMLKKWIYLNAQDFV.................YKFYRTTWIENIQIMAIF-n.....
Q1RJG0_RICBR/28-136                  ..n-ALTIGLIFTVVWLMWRTYQKLSLVSLYYFIIER.YAQ.LKLAI..GE...YFYPI..........SQIGIKFYYLEQKAWVYRNAEEFVhkfwhvtphshninqfgQFLLHSAWPEGIIVFTI--sm....
A0A1E7YYN0_9GAMM/32-128              ...CLVILFGVIVALTLTVKLSWQTFVNGMVWYWCQT.LAP.MRDIF..RS..qPVYTIry......ygHELKYNAQQILQDKYIQWCADQVW.................TAFILAAIIAAVVCVITFF......
A0A2A2GQD2_9GAMM/32-129              ...CLFVSFWIIAALSMTVQLTWQTFVNGMVYWWCKT.LVP.MYSLF..RS..ePVYHLdy......ygQKLHYTPSQILMDRYTVYCGEKVL.................NTFIISGIIAIIVCVV---glfv..
Q6LW78_PHOPR/35-128                  ...WMGYGILLLTALLCFSFIDQDTLKGTYYYWRYSM.VGK.IKPDT..HE...-VFTLw.......qgVTYKSTLGQQRLNPVFIDANRQFW.................LSLQLYLLASLISGLTVFS......
A0A2V1HBW5_9GAMM/29-128              vfyCVFLLFGVVIVVTLLMRLSWQNFENGLIYWWCYL.VEG.FPTVS..PA..qSIYHLny......ygKTLRYTGQQILVDEYTTYCGELVR.................REFIFAAILGVVVCVIT--ag....
A0A0H3GZJ9_KLEPH/32-128              ...VLFILFWVLCGLMLMYRLSWQTFVNGCVYWWCTT.LGP.MRDII..RS..qPVYTIqy......ygQSLEYTSEQILADKYTIWCGEQLW.................TSFVFAAVVSLVICIVTFF......
A0A0J8YDS2_9GAMM/32-136              ...WILLLFVLMTGLSFWGITPDDTLRNGFWHWTGRM.FSS.LVPLM..NPsspATWDIlyhcgdgeqlCRAKLTLAQVIADPWMREMGANLW.................VNLKLCATVSAVFCSVLFS......
H3RL87_PANSE/31-128                  ...WLLNLFFVLTPLFFWMRVPWQDMRNGGLYWWLYLsAGG.EKALF..NV..pPVYDVpy......dgQTLHFTSAAILKDPYMTYAGQLTL.................QELFIAVFLASCVVLAV--ay....
H8K2H5_RICAG/28-136                  ..n-ALTIGLIFTVVWLMWRIYQKLSLVSLYYFIIER.YAG.LKLAI..GE...HFYPT..........NQIGIKFYYLEQKAWVYRNAEEFVhkfwhitphshninqfgQFLLHSAWQEGIITFTAF-m.....
A0A0J8Y9G8_9ENTR/32-136              ...WILILFIGLGAIIFLLKTPQELLENGAWYWFANL.NAT.FADLIpaGK..gKFYDIhyfyapanstLTLKMTLQQMLTDPYMQVMGERFA.................TNLEVAAIASGAFSLCVFF......
A0A0F3MPM7_9RICK/29-109              ...NVLTIGFGLSIFWILWRLYQKLFLSSLYYFAIER.YVQ.LKLAI..GE...HFYDI..........DEIGIKFYSLMLKKWTYLNAQDFV.................YKF----------------yrttw.
D2U4N8_9GAMM/32-129                  ...CLFISFWIIAALSMTIQLTWQTFVNGMVYWWCKT.LVP.MYSLF..RS..ePVYHLdy......ygQKLHYTPSQILMDRYTVYCGEKVL.................NTFIISGIIAIVVCVV---glfv..
D4EA28_SEROD/32-131                  ...CLFIAFFLVAVSVMMWRVSMQNLTNGMIYWWVRM.LES.WPSVA..PS..eSVYHLdy......ygRELVYTGKQVLVDRYVVYCGQLVW.................REALFASGVALAACVV---ggivai
R9VU44_9ENTR/32-136                  ...WILVLFVIIAGALFLSFTSQEMIDNGSWYWFARL.NES.FIDLMpaGR..gKFYDIhyyyaatsttLTLKMTLQQMLTDPYMQFMGEQLA.................SHLQSSALVAGGISLVAFL......
A0A653CJ95_CALMS/1-60                ...----------------------------------.---.MRDIF..KS..qPVYTIry......ygHELKYNAQQILQDKYIQWCADQVW.................TAFILAAIIAAVVCVITFF......
A0A6I4L7B5_9ENTR/32-128              ...VLFILFWVLCGLMLMYRLSWQTFVNGCVYWWCTT.LGP.MRDII..RS..qPVYTIqy......ygQSLEYTSEQILADKYTIWCGEQLW.................TSFVFAAVVSLVICIVTFF......
A6TIJ1_KLEP7/32-128                  ...VLFILFWVLCGLMLMYRLSWQTFVNGCVYWWCTT.LGP.MRDII..RS..qPVYTIqy......ygQSLEYTSEQILADKYTIWCGEQLW.................TGFAFAAVVSLVICIVTFF......
A0A377YVY0_KLEPO/32-128              ...CLFIFFWILVGLILWVKISWQTFVNGCIYWWCTT.LEG.MRDLI..KS..qPVYEIqy......ygKTFQMNAAQVLHDKYMIWCGEQLW.................SAFVLASVVALVICLITFF......
Q93GL8_SALTY/32-128                  ...CLFIFFWILVGLVLWVKLSWQTFVNGGIYWWCTT.LEG.MRDLI..KS..qPVYEIry......ygQTFRMNAAQVLQDKYTVWCGEQLW.................SAFVLAACVALVICLITFF......
A0A2A7U856_EDWTA/32-128              ...CLFLLFWVIAALTLMARLSWQTFVNGCVYWWCQT.LAP.MRSLM..RS..qPVYHIey......ygRKLAYNAEQILRDKYTIWCGEQVW.................SSFVLAIIIGGITCLITFF......
G2H1R5_9ENTR/32-130                  ..y-MIMSFMVITLVTLFIRVSTQNSINGLMYWYAWS.INPlLKNSV..NP...TRYTLny......ygKKLSYTTDQIINDAYTSYCGQLLK.................QELIISALISMIVVFL---aalff.
A0A085FZ03_9ENTR/32-136              ...WIFILFAVLASAIFLWRIPQETLDNGSLWWFAWM.NSS.FFELM..PAsapKLYDIhywyaptqtvMVLKMTVVQIFTDPYMTAMGEQFL.................DYLQWAGLGSGVFSLAVFM......
A0A1Y3ASG8_EURMA/141-240             ...CLFIAFFLVAVSVMMWRVSMQNLTNGMIYWWVRM.LES.WPSVA..PS..eSVYHLdy......ygRELVYTGKQVLVDRYVVYCGQLVW.................REALFASGVALAACVV---ggivai
A0A077ZG65_TRITR/32-128              ...CLFIFFWILVGLVLWVKISWQTFVNGCIYWWCTT.LEG.MRDLI..RS..qPVYEIqy......ygKTFRMNAAQVLHDKYMIWCGEQLW.................SAFVLATVVALVICLITFF......
A0A0M2K3W1_9GAMM/32-128              ..y-VFIGWLALLGFILYLRLNTQTFLNGLVYWWSHT.LIP.FGSII..RK..pPVYPVry......ygNILYYTYDKILTDKYTVWCGITLR.................NEIILSGLFASIITFTV--vm....
J2DEY8_KLEPN/32-128                  ...CLFIFFWILVGLILWVKISWQTFVNGCIYWWCTT.LEG.MRDLI..KS..qPVYEIqy......ygKTFRMNAAQVLHDKYMIWCGEQLW.................SAFVLASVVALVICLITFF......
A0A078KYH4_9GAMM/34-126              ..l-CLFLWLVFTGIITWWVTSYEQIQQAIAY----Y.YAC.FLHLV..GQ..kQSFTLpf......hgQNYRQTVESLLHYSYFKSNANHMV.................ELLGKSALAGFALALFLG-l.....
A5CC23_ORITB/30-137                  ...NVFTIGLGLSIFWIICRLYQKVFLSSLYYFAIER.YVQ.LKLTI..GE...HFYDI..........DQIGIVFYSLRFKKWIHLNAQDFLhefytgqh.gfkiqqlwEFLINSALLEGLIVFAIGV......
A0A0F3MJM2_9RICK/29-78               ...NVLTIGFGLSIFWILWRLYQKLFLSSLYYFAIER.YVQ.LKLAI..GE...HFYDI..........D-----------------------.................-------------------......
W1EBN3_KLEPN/32-128                  ...VLFILFWVLCGLMLMYRLSWQTFVNGCVYWWCTT.LGP.MRDII..RS..qPVYTIqy......ygQSLEYTSEQILADKYTIWCGEQLW.................TSFVFAAVVSLVICIVTFF......
A0A378JR59_9GAMM/34-126              ..i-CLFLWIIFTAFLTWLFIPLEKITHTAAF----Y.YAH.FLRVV..GQ..nHIFELsf......hgKTYKQTVDSILHYPYYQDTANQVI.................NSLGKSAFWAFCFSFILGL......
A0A0A3YMC1_9GAMM/31-128              ...WLLNLFFVLTPLFFWMRVPWQDMRNGGLYWWLYLsAGG.EKALF..NV..pPVYDVpy......dgQTLHFTSAAILKDPYMTYAGQLTL.................QELFIAVFLASCVVLAV--ay....
A0A0F3MIU4_9RICK/29-136              ...NVLTIGFGLSIFWILWRLYQKLFLSSLYYFAIER.YVQ.LKLAI..GE...HFYDI..........DEIGIKFYSLMLKKWTYLNAQDFVykfyigqh.glriyklwQFLINSALLEGLVVFTIG-a.....
A0A514F069_9ENTR/32-128              ...VLFIIFWVLCGLILMYRLSWQTFVNGCVYWWCTT.LAP.MRDII..RS..qPVYTIny......ygKSLEYNSEQILADKYTIWCGEQLW.................TSFVFAAIVSLTVCIVTFF......
W1DNB1_KLEPN/12-108                  ...VLFILFWVLCGLMLMYRLSWQTFVNGCVYWWCTT.LGP.MRDII..RS..qPVYTIqy......ygQSLEYTSEQILADKYTIWCGEQLW.................TGFVFAAVVSLVICIVTFF......
A4WGU5_ENT38/19-123                  ...WIFILFAVLASAIFFWRIPQETLDNGSLWWFAWM.NSS.FIDLM..PAsapKLYDIhywyaptqtpMVLKMTLAQIFTDPYMTAMGDQVL.................SELQWAGLASGVFSMAVFL......
A0A378P2U8_9GAMM/34-126              ..v-YLFIWAGLSIVLTCIFAPHGMIRQTVSY----H.AAH.FYHLA..GV..pHVFSIpv......kgGYASQTVEQLLHNHYFSATSDRLL.................TLLLQSTLWSFPLSLIV--al....
#=GC seq_cons                        ...hlhllFhlLsulhhhh+lshpshlNGhhYWaspp.hss.h+sll..ts..tslYsIpY......aGpplchospQlLtD+YhhasG-plh.................sthlhuulluhllsllsh.......
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