GenomeNet

Database: Pfam
Entry: UPF0242
LinkDB: UPF0242
Original site: UPF0242 
#=GF ID   UPF0242
#=GF AC   PF06785.11
#=GF DE   Uncharacterised protein family (UPF0242) N-terminus
#=GF AU   Moxon SJ;0000-0003-4644-1816
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF SE   SWISS-PROT
#=GF GA   33.50 33.50;
#=GF TC   33.60 33.70;
#=GF NC   33.30 33.40;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 45638612 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF DR   INTERPRO; IPR009623;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This region includes an N-terminal transmembrane region and a
#=GF CC   C-terminal coiled-coil.
#=GF SQ   27
#=GS Y755_CHLPN/7-224          AC Q9Z7F1.1
#=GS D6YT85_WADCW/8-197        AC D6YT85.1
#=GS A0A0P1N0D7_9BACT/6-166    AC A0A0P1N0D7.1
#=GS A0A1T5GBH3_9FLAO/124-191  AC A0A1T5GBH3.1
#=GS W2UL10_9FLAO/9-172        AC W2UL10.1
#=GS A0A0U5JAE2_9BACT/19-240   AC A0A0U5JAE2.1
#=GS A0A0H5DSR8_9BACT/9-200    AC A0A0H5DSR8.1
#=GS A0A2H9I0H9_9ARCH/10-161   AC A0A2H9I0H9.1
#=GS A0A1V9G2H6_9BACT/4-202    AC A0A1V9G2H6.1
#=GS A0A1A9VKB6_GLOAU/13-174   AC A0A1A9VKB6.1
#=GS A0A1M5G860_9FLAO/7-157    AC A0A1M5G860.1
#=GS A0A090E0C4_9BACT/9-200    AC A0A090E0C4.1
#=GS A0A0C2FKW7_9BILA/11-173   AC A0A0C2FKW7.1
#=GS A0A1G3L3Y0_9SPIR/200-367  AC A0A1G3L3Y0.1
#=GS A0A0M0BUP0_9ARCH/7-34     AC A0A0M0BUP0.1
#=GS A0A212KW93_9CHLA/12-229   AC A0A212KW93.1
#=GS A0A1I4XIE0_9FLAO/2-154    AC A0A1I4XIE0.1
#=GS T5KBA3_9CHLA/11-224       AC T5KBA3.1
#=GS A0A0E2J2F1_CHLPS/3-221    AC A0A0E2J2F1.1
#=GS A0A173DYS9_9CHLA/13-226   AC A0A173DYS9.1
#=GS Q6MEU1_PARUW/17-234       AC Q6MEU1.1
#=GS A0A0C1JWV1_9BACT/11-215   AC A0A0C1JWV1.1
#=GS Y616_CHLTR/31-249         AC O84621.1
#=GS A0A078L755_9CHLA/7-194    AC A0A078L755.1
#=GS S7KP70_CHLPS/6-224        AC S7KP70.1
#=GS F6BAK9_METIK/167-356      AC F6BAK9.1
#=GS F8L247_PARAV/8-200        AC F8L247.1
Y755_CHLPN/7-224                     ............................wlhtcf-------KYWIYFLPVVt...lLLPLVCYP.....FLSIsQ.KIYG.............YFVF--....--TTISSLGWFFALRRRENQ.LKT-A..............AVQLLQTKIRKLTENN.........................EGLRQIRE.........SLKEHQQESAQLQIQsqklknslfhlqgllvktkgeGQKL.ETLLLHRTEENR...CLKMQVDSLIQecgekteEVQTLNR...E......LAETLAYQQALNDEYQATFSEQRNMLDKRQIYIGKLENKVQDLMYEIRNLLQLE.............................
D6YT85_WADCW/8-197                   ..................................RLQLSGLIIALYFASIL.....IISIYPDA.....SLL-.-.----.............KFVFGL....FIASVGSILAFLLLRQWE--.-----..............-KSKLAEQLPLPSSPEpmqna..............psfsspENIGELEQ.........ALKDAQSKNHDLIQK.....................QNQL.EETLHKHEQEKA...QFELKLQDIQH.......QIEAQSL...E......ADEEIRRKTTLLSEYQETINQQREVIKKKQEQISELESKVRDLNYEVKTLLQLA.............................
A0A0P1N0D7_9BACT/6-166               ........fffilitgvwvsfliqgcastaeqed-----------------.....--------.....----.-.----.............------....--------------------.----Iyg.........gvvEEATEGVDTSYVTTLS.........................EENKSLRE.........QIAKLQDQNAKLQSE.....................KNEL.EKNLRSLQESNT...QLTAKISELGQ.......QLEAEKQknrD......LSAKLAQYEALPQPGASE-MELRNEIAKRDSEITEYKKQIRDLQAK--------laeletk......................
A0A1T5GBH3_9FLAO/124-191             ...............................sed-----------------.....--------.....----.-.----.............------....--------------------.-----..............----------------.........................--------.........---------------.....................----.----------IE...EINEDIDEIQE.......DIEEINE...D......EEDEDHGERARTVMLKSKVSSNRYEIKQLRDKISELESLI--------------drik.........................
W2UL10_9FLAO/9-172                   ......................iilmlkkifvgt-----------------.....--------.....----.-.----.............-----V....LIAMASSCVSSKVYNDLESRyAKLKQ..............ERNELAAENQELESANnk.....................lnNGVRVLQE.........AYDKVVAERDQLRQD.....................YEAT.KSQLTKLQESYD...ALEKQSSSAIA.......ENSRKNR...E......LLTQLEEKERVLAEEQARLEQLKSELDSRSQRVNELEG----------------liaskdaam....................
A0A0U5JAE2_9BACT/19-240              ..................................RQYLSIAIIFFYLLPLL.....FFASYSIG.....LMSH.H.KSWS.............MLSFGL....LLIACGSLCLILLIYYWELA.LKEKLqteq.....sklfhQISFNPEKENKVTSLDtshtf..............pqlidsEPHSIKDDikdlslletNLKESQSEQMRLEEE.....................VQSK.SLAIEHLTEENQ...LLSVKAQQTSQ.......DFSDYKL...F......SEEQLKQKQLQINLLQQMIEDQRGEMEKRQDQIYQLDTKVHDLSYEIKTLLYLH.............................
A0A0H5DSR8_9BACT/9-200               ...............................rpl-----LLTVLFYTLPLS.....-LIIGAAG.....YFGI.SlYSSK.............FLSMGL....FVISMGSI---AIYMELRQK.VSSEL..............PQEELPPVAEE----Plvld.................flpaEGKESEEA.........ANTAFLQLEKELREE.....................IAFR.NEEIQRLNQERE...RERVEKELKEE.......ELDSAQR...L......FEEKLEEEKLRNIGLQETVSDLKSRLEFKQEEIDKLGGKIRDLTYEIKTLLQIA.............................
A0A2H9I0H9_9ARCH/10-161              .........................srgkviaaa-----------------.....--------.....----.-.----.............------....---LIGILVGFGSCYLYYKP.QVEDL..............-NMRLSNTLEDLSTAE.........................EKITQLQS.........ELTSVQAEKSRLEELas.................slNSSL.TETIQKLSDKEN...ELKKALED-LN.......TMKSRLT...A......MNETIAQKEEKIAMLNAKISTLEDRIDKIEEAISKLET----------------drtlliy......................
A0A1V9G2H6_9BACT/4-202               ............................iakpfc---------VVYVLPISv...lFLSCSQKPhsspfHISE.I.SMWQ............aVIVLLL....LIMIAASLILHYRYRKMKVR.LHKER..............EAAFLEARRMVEIEKQkafql..............anklieEKTAIAEEev.....reAIEKAQEEARQLQAQ.....................VTST.SVMLANKTDYLM...QLQEKLKTSDN......nEYKRIAK...E......IKTNLTEADH--------------------------------------------wadfiknfnllhshyvdnitqkhpdltan
A0A1A9VKB6_GLOAU/13-174              .......gtlaaltllasgvfaaapyigflapva-----------------.....--------.....----.-.----.............ALSIGL...pFIIGCAVFSAVAMALSYKAI.SKNKTi...........seKDVQLAEKVEEVSKKD.........................AQLAKEED.........KVQAQKRKIFELEAQ.....................LTKK.EAEVKAKEEENS...EQKIEINKKNE.......EIDNQKK...E......IEE-LKHKKTFVSQAVKSIKEVS-------------------------------evse.........................
A0A1M5G860_9FLAO/7-157               ........lmisgvfmlnscvspkdykslegrha-----------------.....--------.....----.-.----.............------....--------------------.-DLKR..............ENRDLQADMEKYKNLE.........................EDFSNLEE.........DYKAAAAERDRLKDE.....................LAST.ERSYKNLKNSYD...ALEENSSAAIS.......ENSRQNR...E......LLAQLEEKEEALSKEQERLEKLKRDLEARSKRVDELESLI--------------aakdakm......................
A0A090E0C4_9BACT/9-200               ..................................RQSVTISALLVYSAPLI....fVLGFSKNQ.....TFS-.-.-SWT.............IFSIAL....LILSAASLIHLSLLFNFYKN.EGEGFeg..........ssEKENPDQKEAFLSEER.........................---RVELE.........ELENLRAKEEELREE.....................ISYR.NEELLRLTREKEfeiSLREQLED---.......DFDRFRK...D......SEDRLAEEKILLQEYAENISSLRASLEERQEENERLQSKIRDMAYEIKTLVDLA.............................
A0A0C2FKW7_9BILA/11-173              ......................ssdlflflaggl-----------------.....--------.....----.-.----.............------....---AVNSL-MLWLMYRWLRS.REEGYep..........lpSTDAVHDDTGASRKIS.........................ATLKDLLA.........YYDQVQGCIQELKDD.....................LAIL.RKEKRDFQEDMR...SLEQKANEQGE.......ALASVRG...L......MEAELKSTKESINTQLGRVIVFHDEIQEHKKRIADLESKVAKLSEELETL----rh...........................
A0A1G3L3Y0_9SPIR/200-367             ..............................strt-------RFVFYFLAIVifpfvMISIHLYD.....FFCN.E.SSFHlsq......fgktFFIIAL....FFIISGLVLTFLMIKYYQNP.LKAMKnmt........ekiRQGDYETKMQVVSSDElg....................ylgESLNQMSS.........QLKNQITEITNMNKN.....................LECKvRERTQELEEEKN...KLKIRNVEIEK.......EIEMARQ...I......QK----------------------------------------------------slipsv.......................
A0A0M0BUP0_9ARCH/7-34                ........................aailimliig-----------------.....--------.....----.-.----.............-----L....--------------------.-----..............----------------.........................--------.........---------------.....................----.------------...-----------.......-------...-......------------------------------------------------------vsgyfignifqqdqaps............
A0A212KW93_9CHLA/12-229              ..................................KQAVYLTIFTVYLLPVL.....IYSKHSIG.....LMPS.T.KSWG.............ILSVGL....VLSLFGSALLILLVHNWEVT.LKSKLaaivtrrvdeslhhQ--------------SlqmpatgmvyeeekitplhpdpngdHENSRLRQ.........MLAEGQKQSDQLSEE.....................LRST.MHELRQFAQEKD...TLAQQLEDLRG.......EYDRYTA...N......SEDKLQQRDGSVSTFQRTLVEQRTELESKQHLIAKLENKVRDLSYEVKTLLQL-g............................
A0A1I4XIE0_9FLAO/2-154               ................................kk-----------------.....--------.....----.-.----.............---IAL....LFVVIFSLTSCVSSKVYND-.LESKHad.........lkrENRNLKSDLDKYKNLD.........................EDFSVLNK.........DYAEAVAERDRLKEE.....................LASN.RRKYETLKDSYD...ALEENSSAAIA.......DNSRQNR...Q......LLAELEEKENALAQEQARLTRLQKDLDSRSRRIDELEG----------------liaakda......................
T5KBA3_9CHLA/11-224                  ......................isqyrnsfffti--------------A-Y.....CLPISCLP.....FFPT.S.QTKY.............SYLIFS....IISSTGWL---FAIGRREKQ.LKA-A..............TNQLLQKKINKIIEGD.........................EGLRQIRD.........SINAKKHESELLKRQnqkllnqmicirdaflkskqdTQQI.ETTTNLLREENH...RLQLQLDALSQeckektgENQQLSR...E......LAETLAYQQALNEEYQATFAEQHSMLDKRQIYIGKLESKVQDLMCEIQNLLQLE.............................
A0A0E2J2F1_CHLPS/3-221               .............................kffhp-----IARYHNYLFPIVa...fLLPLVCLP.....FLSDsQ.KKYS.............YFVFSI....-ISLVGWF---FSIGLREKQ.LKT-A..............AGQLLQTKIRKIIEKD.........................EGLRKICE.........SVEERQYESQQLRSQnqkllnqllhvrgvfmktkadMQKL.EGLVAHLREENQ...CLQLQLDALSQecrekeeESRELNR...E......LAEALAYQQVLNEEYQATFTEQHNMLDVRQVYIGKLESKVQDLMCEIRNLLQLE.............................
A0A173DYS9_9CHLA/13-226              ................................kc--YYYVFPLAAFLIPLS.....FFSHFSDN.....YYPS.N.---Y.............QYFICS....IIFSLGWFCVILCKERQ---.LKA-A..............ASQLLQAKIRKIMEQD.........................EGLRKVCA.........SVEENRRESLQLRARnqelssqlllarnafiktkteFQQL.EGLISQLKEENQ...CLHLQLDALSQecgekdrEGQRLHR...E......LTDALAYQQILNEEYQATFEEQHNMLDMRQAYIAKLESKVQDLMCEIRNLLQL-d............................
Q6MEU1_PARUW/17-234                  ..................................RQFFSAAVIFFYLLPLL.....FFVTYSIG.....LMPH.Q.KSWS.............ILTLGL....LLVAIGSICLILLAYYWEIG.LKTKWqges.....ailssQSSFTSEKENKVTALDpaftl..............vpleeaPSFTTKEEvt....llnSLENLNDEQRKREEE.....................LALK.QSEIQKLVEENQ...SLISQTQQTQQ.......DFADYKL...F......SEEQLKQKQLQINFLQQTIEDQRSEMEKRQDQIFHLDTKVHDLSYEIKTLLYLH.............................
A0A0C1JWV1_9BACT/11-215              ..................................RYTILLIIIAFYLLPIM.....LLSSYGRL.....YMPV.Q.KGWN.............LLAFGI....FCSSIGLLGIFWMMCRLSHK.AEHGTrdth......lsalEASEFSPKQSNIVELD.........................---MTQAK.........ALEDLQEQHNELHEHvla..............vqkdLEAK.TKELLEREQNNQ...HLQEKLSASAA.......EYEMSKQ...A......YESALDQQKLLLVDSQKTITEQRECIDKKLQQIAQLEIKVSDLTYEIKTLIQLA.............................
Y616_CHLTR/31-249                    ..................................KIHYCISRYFHYLPPVLa...iLLPIGSWP.....FLSE.Q.QWWYgsflfpvvsslgwLFAIGRrerqLRAAAGQL------------.-----..............----LEAKIRKLTEQD.........................EGLKNIRE.........TIEKRQKETDRLKLHndklveqlgqarevfiqakgrYDHM.EELSRRLKEENQ...QLQIQLEAAVRernekilENQELLQ...E......LKETLAYQQELHDEYQATFVEQHSMLDKRQAYIGNLEAKVQDLMCELRNLLQLE.............................
A0A078L755_9CHLA/7-194               ..................................KYKFLLIIFFVYFIPYC.....SLAIYNFQ.....YLAS.E.DLWN.............ILSIGL....LIPIFGTLLLFYSYLTFQKN.VTL--..............QANLIPTDQSVLQELS.........................---DQNEQ.........ALLNVQEELKILQDL.....................FDAK.KQEIEVLTKDNV...GLKKEKEMIAE.......QIKEHKK...E......IEAVLEEKEKKFQESILSINDLRATIEKKQNYINQLESKVRDLNYEIKTLLKLA.............................
S7KP70_CHLPS/6-224                   .................................k-YFHYILKYYYYFFPLAa...fLIPLIFFS.....CLSDfQ.KNYQ.............YFVFS-....LISSGGWF--FAIICR-EKQ.LK--F.............aANQLLQTKIRKIIEKD.........................EGLRKVCA.........SVEEGRQESMQLRSRnqelskqlllarnafmktkaeFQQL.ESLISQLKEENQ...CLHLQLDALSQeykekeeESQKLHR...E......LTDALAYQQVLNEEYQATFEEQHNMLDVRQAYIGKLESKVQDLMCEIRNLLQL-d............................
F6BAK9_METIK/167-356                 kvleneksftatvayaiitkpitnntltygfvgv-----------------.....--------.....----.-.----.............------....-----SLLLMISIIFLVITT.RKNKL..............YKNKISEMQNEIENLS.........................KILEKKDE.........EVKKLNEINNLLNNDlkn..............vnknIEAY.KKEILEKDNEIE...KIKEEYEKCLR.......KIEELKK...ElskideIKDELEAYKELSERYKKELETLKDSINKKDEYIKMLENKIKE------------yesnkrd......................
F8L247_PARAV/8-200                   ..................................RHQLIGLAVALYLIPLF.....VLTFMSLQ.....HLPL.S.KSWT.............FLSVGL....FLSLAGSLFLLFVLKGWEDA.LKLYF..............ENIYIESQKALIPETP........................aEDFAILKQ.........KVEELTEQEELLARE.....................LSQK.DTELAEYQNREE...EIK-RLVQISE.......DFAEFRL...E......MEQQIEEREQLIHTLRQETHEQKIVLQSKDDRIEDLESQVNDRNYELQTLLKF-s............................
#=GC seq_cons                        ................................................s........h............h.......................h.h.h....hh..hu.l..hhhhh.hp...hct.h..............tpp.lpschptl.phs.........................cthpphpp.........plcphppcpppLppc.....................hpph.cpplpphpc-pp...pLp.phpthtp.......-hpphpp...-......hpppLtpppth.pphptphpc.+s.l-p+pp.IscLEsplp-h..c.....................................
//
DBGET integrated database retrieval system