GenomeNet

Database: Pfam
Entry: VPS13_mid_rpt
LinkDB: VPS13_mid_rpt
Original site: VPS13_mid_rpt 
#=GF ID   VPS13_mid_rpt
#=GF AC   PF16910.6
#=GF DE   Repeating coiled region of VPS13
#=GF AU   Coggill P;0000-0001-5731-1588
#=GF SE   HMMER:Q96RL7
#=GF GA   26.20 26.20;
#=GF TC   26.20 26.20;
#=GF NC   25.80 26.10;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Repeat
#=GF RN   [1]
#=GF RM   15498460
#=GF RT   Analysis of the human VPS13 gene family.
#=GF RA   Velayos-Baeza A, Vettori A, Copley RR, Dobson-Stone C, Monaco
#=GF RA   AP;
#=GF RL   Genomics. 2004;84:536-549.
#=GF RN   [2]
#=GF RM   21764909
#=GF RT   Vacuolar protein sorting protein 13A, TtVPS13A, localizes to the
#=GF RT   tetrahymena thermophila phagosome membrane and is required for
#=GF RT   efficient phagocytosis.
#=GF RA   Samaranayake HS, Cowan AE, Klobutcher LA;
#=GF RL   Eukaryot Cell. 2011;10:1207-1218.
#=GF DR   INTERPRO; IPR031642;
#=GF DR   SO; 0001068; polypeptide_repeat;
#=GF CC   This repeat is a family of repeating regions of eukaryotic
#=GF CC   vacuolar sorting-associated 13 proteins. This repeating region
#=GF CC   shares a common core element that includes a well-conserved
#=GF CC   P-x4-P-x13-17-G sequence.  The exact function of this repeat is
#=GF CC   not known [1,2].
#=GF SQ   3784
#=GS A0A091JHR7_EGRGA/1139-1336  AC A0A091JHR7.1
#=GS A0A455BP89_PHYMC/568-792    AC A0A455BP89.1
#=GS A0A287DGL2_ICTTR/1141-1252  AC A0A287DGL2.1
#=GS E0VJH2_PEDHC/563-794        AC E0VJH2.1
#=GS C7YJL9_NECH7/595-831        AC C7YJL9.1
#=GS A0A2H3C2N9_9AGAR/581-816    AC A0A2H3C2N9.1
#=GS A0A1V6ZAN1_PENNA/589-825    AC A0A1V6ZAN1.1
#=GS A0A182QNC8_9DIPT/573-806    AC A0A182QNC8.1
#=GS A0A3Q0G639_ALLSI/610-896    AC A0A3Q0G639.1
#=GS A0A317XYG8_9BASI/623-859    AC A0A317XYG8.1
#=GS A0A3Q2HM20_HORSE/1131-1328  AC A0A3Q2HM20.1
#=GS A0A0V0WI91_9BILA/362-525    AC A0A0V0WI91.1
#=GS F6QCK4_HORSE/612-833        AC F6QCK4.2
#=GS A0A0L0UNP8_9BASI/64-210     AC A0A0L0UNP8.1
#=GS A0A0D9S8K7_CHLSB/613-774    AC A0A0D9S8K7.1
#=GS F4KII0_ARATH/598-824        AC F4KII0.2
#=GS A0A1A9X0W3_9MUSC/592-862    AC A0A1A9X0W3.1
#=GS A0A3Q2DZE2_CYPVA/1150-1347  AC A0A3Q2DZE2.1
#=GS A0A2U9BUI3_SCOMX/573-797    AC A0A2U9BUI3.1
#=GS M0TYA6_MUSAM/379-607        AC M0TYA6.1
#=GS A0A2I4CVG2_9TELE/1120-1227  AC A0A2I4CVG2.1
#=GS A0A0E0JZR3_ORYPU/596-812    AC A0A0E0JZR3.1
#=GS E5AEZ2_LEPMJ/598-834        AC E5AEZ2.1
#=GS F6Y8D7_CALJA/1689-1801      AC F6Y8D7.2
#=GS A0A337SDT8_FELCA/1689-1885  AC A0A337SDT8.1
#=GS G3VT04_SARHA/794-900        AC G3VT04.1
#=GS A0A1S4BKX1_TOBAC/175-398    AC A0A1S4BKX1.1
#=GS A0A1U7UN71_TARSY/612-900    AC A0A1U7UN71.1
#=GS A0A0D2QMN3_GOSRA/559-785    AC A0A0D2QMN3.1
#=GS R7V2K6_CAPTE/622-843        AC R7V2K6.1
#=GS A0A1S3NLS9_SALSA/1169-1364  AC A0A1S3NLS9.1
#=GS A0A368FD21_ANCCA/132-323    AC A0A368FD21.1
#=GS H0Z4H2_TAEGU/1155-1352      AC H0Z4H2.1
#=GS A0A2D0RRE4_ICTPU/1116-1236  AC A0A2D0RRE4.1
#=GS A0A2I0M6Y4_COLLI/1103-1211  AC A0A2I0M6Y4.1
#=GS A0A195C6X6_9HYME/554-775    AC A0A195C6X6.1
#=GS A0A452J393_9SAUR/240-527    AC A0A452J393.1
#=GS A0A1L9SQJ3_9EURO/589-825    AC A0A1L9SQJ3.1
#=GS A0A2U3VNU6_ODORO/568-792    AC A0A2U3VNU6.1
#=GS H2ZR30_CIOSA/1112-1300      AC H2ZR30.1
#=GS I3MC21_ICTTR/1106-1217      AC I3MC21.2
#=GS A0A445EM70_ARAHY/1929-2160  AC A0A445EM70.1
#=GS A0A0V1NZG9_9BILA/1148-1353  AC A0A0V1NZG9.1
#=GS A0A3Q2H6G4_HORSE/569-790    AC A0A3Q2H6G4.1
#=GS A0A452SGE8_URSAM/1127-1325  AC A0A452SGE8.1
#=GS E9H8S3_DAPPU/1142-1340      AC E9H8S3.1
#=GS A0A287BHE4_PIG/613-775      AC A0A287BHE4.1
#=GS W5M672_LEPOC/799-902        AC W5M672.1
#=GS A0A2I2YMP9_GORGO/613-773    AC A0A2I2YMP9.1
#=GS A0A2R8QHW5_DANRE/568-798    AC A0A2R8QHW5.1
#=GS A0A3B0J766_DROGU/1184-1397  AC A0A3B0J766.1
#=GS A0A340XIM2_LIPVE/267-378    AC A0A340XIM2.1
#=GS A0A2K6GHK6_PROCO/321-393    AC A0A2K6GHK6.1
#=GS F6PI25_MONDO/612-771        AC F6PI25.2
#=GS A0A0D9YS50_9ORYZ/507-723    AC A0A0D9YS50.1
#=GS H3ARW8_LATCH/623-909        AC H3ARW8.1
#=GS A0A384CEP6_URSMA/790-901    AC A0A384CEP6.1
#=GS C5MCF6_CANTT/585-819        AC C5MCF6.1
#=GS A0A0K9RFD4_SPIOL/576-805    AC A0A0K9RFD4.1
#=GS A0A0V0WIG8_9BILA/1141-1344  AC A0A0V0WIG8.1
#=GS A0A2K5U9J4_MACFA/1131-1328  AC A0A2K5U9J4.1
#=GS D3BGV5_POLPP/1-189          AC D3BGV5.1
#=GS A0A397Z3I2_BRACM/600-822    AC A0A397Z3I2.1
#=GS A0A1L8FMG8_XENLA/616-903    AC A0A1L8FMG8.1
#=GS A0A3B3HZJ2_ORYLA/583-868    AC A0A3B3HZJ2.1
#=GS A0A0L0RWP3_ALLM3/600-816    AC A0A0L0RWP3.1
#=GS A0A1A9XV12_GLOFF/593-863    AC A0A1A9XV12.1
#=GS A0A369GIB8_9HYPO/591-827    AC A0A369GIB8.1
#=GS A0A139IS76_9PEZI/595-831    AC A0A139IS76.1
#=GS W5MUH4_LEPOC/1-186          AC W5MUH4.1
#=GS B4LJ91_DROVI/580-813        AC B4LJ91.1
#=GS Q94010_CAEEL/559-780        AC Q94010.1
#=GS A0A2U3VNU4_ODORO/568-792    AC A0A2U3VNU4.1
#=GS A0A0V1CK98_TRIBR/1073-1278  AC A0A0V1CK98.1
#=GS A0A2U3Z514_LEPWE/594-700    AC A0A2U3Z514.1
#=GS A0A0P7XPT5_SCLFO/1544-1769  AC A0A0P7XPT5.1
#=GS A0A0V0WIA6_9BILA/573-800    AC A0A0V0WIA6.1
#=GS F6TC53_ORNAN/1144-1247      AC F6TC53.1
#=GS A0A096NM92_PAPAN/1131-1328  AC A0A096NM92.2
#=GS A0A2K5KG28_COLAP/1174-1371  AC A0A2K5KG28.1
#=GS A0A1U8DLW3_ALLSI/1644-1840  AC A0A1U8DLW3.1
#=GS A0A2K5PGJ3_CEBCA/612-833    AC A0A2K5PGJ3.1
#=GS A7EK83_SCLS1/594-830        AC A7EK83.1
#=GS A0A1S3PJV1_SALSA/573-797    AC A0A1S3PJV1.1
#=GS K7B738_PANTR/569-793        AC K7B738.1
#=GS A0A3B6QH16_WHEAT/572-794    AC A0A3B6QH16.1
#=GS A0A2K5U9C3_MACFA/1690-1886  AC A0A2K5U9C3.1
#=GS A0A369S1S9_9METZ/618-887    AC A0A369S1S9.1
#=GS R4XGK2_TAPDE/582-819        AC R4XGK2.1
#=GS A0A0G4F3G8_VITBC/868-1057   AC A0A0G4F3G8.1
#=GS A0A493SZA8_ANAPP/519-741    AC A0A493SZA8.1
#=GS F4W7T8_ACREC/555-775        AC F4W7T8.1
#=GS A0A2S4V7N0_9BASI/642-878    AC A0A2S4V7N0.1
#=GS A0A158PAL8_ANGCA/1151-1356  AC A0A158PAL8.1
#=GS A0A493TZB5_ANAPP/1416-1611  AC A0A493TZB5.1
#=GS F1QJI4_DANRE/574-798        AC F1QJI4.1
#=GS K9FPN7_PEND2/590-826        AC K9FPN7.1
#=GS A0A3B5Y0E0_WHEAT/552-768    AC A0A3B5Y0E0.1
#=GS A0A2K6TZQ9_SAIBB/563-784    AC A0A2K6TZQ9.1
#=GS A0A2U9R1B3_PICKU/582-817    AC A0A2U9R1B3.1
#=GS A0A016VYU0_9BILA/93-215     AC A0A016VYU0.1
#=GS H9FWK4_MACMU/782-901        AC H9FWK4.1
#=GS A0A337SER1_FELCA/1130-1327  AC A0A337SER1.1
#=GS A0A452SGA1_URSAM/502-723    AC A0A452SGA1.1
#=GS A0A2K1QMP0_9PEZI/624-860    AC A0A2K1QMP0.1
#=GS A0A3Q2C937_CYPVA/486-683    AC A0A3Q2C937.1
#=GS A0A1P8BEE6_ARATH/417-643    AC A0A1P8BEE6.1
#=GS W2RPW0_9EURO/592-828        AC W2RPW0.1
#=GS F7AQS2_MACMU/1131-1323      AC F7AQS2.2
#=GS A0A1U8JUF2_GOSHI/585-817    AC A0A1U8JUF2.1
#=GS A0A099ZG63_TINGU/1670-1866  AC A0A099ZG63.1
#=GS A0A1X0NYZ8_9TRYP/666-887    AC A0A1X0NYZ8.1
#=GS A0A4Y0ARE3_ANOFN/1205-1422  AC A0A4Y0ARE3.1
#=GS A0A3Q2EIY1_CYPVA/596-881    AC A0A3Q2EIY1.1
#=GS A0A1S3ENP1_DIPOR/569-790    AC A0A1S3ENP1.1
#=GS A0A0V0S5Y0_9BILA/546-773    AC A0A0V0S5Y0.1
#=GS A0A093HSX3_STRCA/580-802    AC A0A093HSX3.1
#=GS A0A2U3VNU6_ODORO/1139-1252  AC A0A2U3VNU6.1
#=GS A0A044THQ2_ONCVO/1171-1348  AC A0A044THQ2.2
#=GS A0A452SGE8_URSAM/1644-1840  AC A0A452SGE8.1
#=GS F7B1U1_CALJA/613-773        AC F7B1U1.2
#=GS F6X0I8_XENTR/1637-1834      AC F6X0I8.1
#=GS A0A445HWP0_GLYSO/558-780    AC A0A445HWP0.1
#=GS A0A2I3THT4_PANTR/782-901    AC A0A2I3THT4.1
#=GS A0A2T7C9P4_9POAL/553-769    AC A0A2T7C9P4.1
#=GS H0UT67_CAVPO/390-587        AC H0UT67.2
#=GS H2NNE7_PONAB/868-1065       AC H2NNE7.2
#=GS A0A2K6RXU4_RHIRO/613-773    AC A0A2K6RXU4.1
#=GS A0A329RYM7_9STRA/622-871    AC A0A329RYM7.1
#=GS F6Y4X8_HORSE/613-774        AC F6Y4X8.2
#=GS H2N920_PONAB/782-901        AC H2N920.1
#=GS H2SAK8_TAKRU/1294-1398      AC H2SAK8.2
#=GS A0A2I4FP96_JUGRE/853-1068   AC A0A2I4FP96.1
#=GS D4A4K4_RAT/1171-1368        AC D4A4K4.2
#=GS A0A086T8Q6_ACRC1/595-831    AC A0A086T8Q6.1
#=GS A0A0L7QUD0_9HYME/542-753    AC A0A0L7QUD0.1
#=GS A0A1J1J4K0_9DIPT/769-901    AC A0A1J1J4K0.1
#=GS F6Y8D7_CALJA/1174-1371      AC F6Y8D7.2
#=GS F6RNH9_HORSE/568-792        AC F6RNH9.2
#=GS A0A1V9X416_9ACAR/668-817    AC A0A1V9X416.1
#=GS A0A3B3I9P0_ORYLA/586-871    AC A0A3B3I9P0.1
#=GS B8BAF9_ORYSI/560-785        AC B8BAF9.1
#=GS A0A0D2VTA3_CAPO3/891-1016   AC A0A0D2VTA3.1
#=GS A0A2Y9RNG5_TRIMA/568-792    AC A0A2Y9RNG5.1
#=GS A0A1E3I9L3_9TREE/597-834    AC A0A1E3I9L3.1
#=GS A0A1U7ZRR6_NELNU/589-813    AC A0A1U7ZRR6.1
#=GS A0A3B4CM79_PYGNA/574-798    AC A0A3B4CM79.1
#=GS A0A1X2HWY5_SYNRA/587-822    AC A0A1X2HWY5.1
#=GS A0A2Y9NIR0_DELLE/1142-1253  AC A0A2Y9NIR0.1
#=GS A0A2B4RKB8_STYPI/644-924    AC A0A2B4RKB8.1
#=GS A0A2Y9RIV9_TRIMA/687-880    AC A0A2Y9RIV9.1
#=GS A0A3Q2GV27_HORSE/601-762    AC A0A3Q2GV27.1
#=GS A0A2T7P4B2_POMCA/657-926    AC A0A2T7P4B2.1
#=GS A0A3Q2H6G4_HORSE/1647-1843  AC A0A3Q2H6G4.1
#=GS A0A0L0CCT9_LUCCU/446-564    AC A0A0L0CCT9.1
#=GS F2Q5D9_TRIEC/599-834        AC F2Q5D9.1
#=GS A0A3Q2FDL5_CYPVA/912-1021   AC A0A3Q2FDL5.1
#=GS V4C0Y2_LOTGI/1180-1379      AC V4C0Y2.1
#=GS A0A2R8Z9J5_PANPA/569-793    AC A0A2R8Z9J5.1
#=GS W2STX2_NECAM/1151-1352      AC W2STX2.1
#=GS Q4QEU1_LEIMA/772-904        AC Q4QEU1.1
#=GS A0A084WJG5_ANOSI/1141-1359  AC A0A084WJG5.1
#=GS A0A314YJT4_PRUYE/559-762    AC A0A314YJT4.1
#=GS A0A168MWQ0_ABSGL/607-843    AC A0A168MWQ0.1
#=GS E3LVP6_CAERE/1153-1353      AC E3LVP6.1
#=GS A0A1U8JUF0_GOSHI/585-817    AC A0A1U8JUF0.1
#=GS A0A3B4A869_9GOBI/1021-1203  AC A0A3B4A869.1
#=GS A0A2K6BNM1_MACNE/1690-1886  AC A0A2K6BNM1.1
#=GS I3M1Z0_ICTTR/1172-1368      AC I3M1Z0.2
#=GS A0A1D6QNE7_MAIZE/1-197      AC A0A1D6QNE7.1
#=GS G3RL65_GORGO/519-740        AC G3RL65.2
#=GS A0A3P8R1C8_ASTCA/1638-1742  AC A0A3P8R1C8.1
#=GS A0A2K5DMP3_AOTNA/1684-1881  AC A0A2K5DMP3.1
#=GS VP13F_DICDI/1837-2045       AC Q54KX3.1
#=GS A0A3S2LCR3_CHISP/567-788    AC A0A3S2LCR3.1
#=GS A0A2J6LKQ2_LACSA/570-797    AC A0A2J6LKQ2.1
#=GS A0A3Q7SBC6_VULVU/568-792    AC A0A3Q7SBC6.1
#=GS A0A2Y9K555_ENHLU/568-792    AC A0A2Y9K555.1
#=GS A0A3Q1CYZ2_AMPOC/1153-1267  AC A0A3Q1CYZ2.1
#=GS A0A443SI60_9ACAR/573-812    AC A0A443SI60.1
#=GS B3MHR1_DROAN/1182-1395      AC B3MHR1.1
#=GS A0A2Y9K9G7_ENHLU/568-792    AC A0A2Y9K9G7.1
#=GS A0A059B6S0_EUCGR/576-808    AC A0A059B6S0.1
#=GS A0A0R0GPT9_SOYBN/1-64       AC A0A0R0GPT9.1
#=GS A0A0A0L976_CUCSA/603-756    AC A0A0A0L976.1
#=GS A0A3Q7TD41_VULVU/794-901    AC A0A3Q7TD41.1
#=GS A0A3Q1MGK9_BOVIN/1354-1551  AC A0A3Q1MGK9.1
#=GS A0A0E0JZQ9_ORYPU/596-812    AC A0A0E0JZQ9.1
#=GS A0A0L0FUS8_9EUKA/109-158    AC A0A0L0FUS8.1
#=GS A0A096P1U1_PAPAN/569-793    AC A0A096P1U1.2
#=GS A0A016VY32_9BILA/93-215     AC A0A016VY32.1
#=GS A0A455B4B4_PHYMC/601-721    AC A0A455B4B4.1
#=GS F7IEH1_CALJA/569-793        AC F7IEH1.2
#=GS A0A182LB90_9DIPT/557-790    AC A0A182LB90.1
#=GS A0A0D3F525_9ORYZ/698-914    AC A0A0D3F525.1
#=GS A0A0D3F526_9ORYZ/698-914    AC A0A0D3F526.1
#=GS A0A1S4AJR0_TOBAC/167-394    AC A0A1S4AJR0.1
#=GS A0A0H1B9S3_9EURO/586-822    AC A0A0H1B9S3.1
#=GS A0A316Z2F6_9BASI/622-858    AC A0A316Z2F6.1
#=GS A0A2K6GA96_PROCO/558-767    AC A0A2K6GA96.1
#=GS A0A2K6BNM4_MACNE/569-790    AC A0A2K6BNM4.1
#=GS A0A3P9ARF8_9CICH/1603-1707  AC A0A3P9ARF8.1
#=GS A0A2K5ZCK2_MANLE/612-833    AC A0A2K5ZCK2.1
#=GS A0A1F5LFI4_9EURO/588-824    AC A0A1F5LFI4.1
#=GS C5DHN4_LACTC/574-810        AC C5DHN4.1
#=GS A0A1I8NHV4_MUSDO/576-810    AC A0A1I8NHV4.1
#=GS A0A0K0FDI7_STRVS/559-782    AC A0A0K0FDI7.1
#=GS E3QQH6_COLGM/596-832        AC E3QQH6.1
#=GS A0A1X7ULJ0_AMPQE/27-243     AC A0A1X7ULJ0.1
#=GS A0A498S6B9_ACAVI/562-792    AC A0A498S6B9.1
#=GS A0A072P531_9EURO/597-833    AC A0A072P531.1
#=GS A0A1G4MB30_LACFM/577-813    AC A0A1G4MB30.1
#=GS A0A3Q4GV63_NEOBR/565-789    AC A0A3Q4GV63.1
#=GS A0A420HWP3_9PEZI/594-830    AC A0A420HWP3.1
#=GS A0A2I3GA42_NOMLE/569-793    AC A0A2I3GA42.1
#=GS A0A1B0BRA1_9MUSC/593-863    AC A0A1B0BRA1.1
#=GS A0A151PIL6_ALLMI/610-860    AC A0A151PIL6.1
#=GS A0A167JE23_CALVF/595-832    AC A0A167JE23.1
#=GS A0A267GP27_9PLAT/640-873    AC A0A267GP27.1
#=GS E6R384_CRYGW/600-837        AC E6R384.1
#=GS A0A420HM74_9PEZI/593-829    AC A0A420HM74.1
#=GS A0A3Q1MGK9_BOVIN/469-690    AC A0A3Q1MGK9.1
#=GS A0A2R9A4M7_PANPA/1122-1319  AC A0A2R9A4M7.1
#=GS H2ZR32_CIOSA/1126-1324      AC H2ZR32.1
#=GS A0A2Y9Q8R9_DELLE/781-901    AC A0A2Y9Q8R9.1
#=GS A0A067P330_PLEOS/588-824    AC A0A067P330.1
#=GS A0A1S3EMD5_DIPOR/569-790    AC A0A1S3EMD5.1
#=GS A0A2K5D326_AOTNA/612-772    AC A0A2K5D326.1
#=GS G3RV00_GORGO/1038-1235      AC G3RV00.2
#=GS H6CAX4_EXODN/599-835        AC H6CAX4.1
#=GS A0A1D5PJI9_CHICK/574-798    AC A0A1D5PJI9.2
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