GenomeNet

Database: Pfam
Entry: VirC2
LinkDB: VirC2
Original site: VirC2 
#=GF ID   VirC2
#=GF AC   PF07181.12
#=GF DE   VirC2 protein
#=GF AU   Moxon SJ;0000-0003-4644-1816
#=GF SE   Pfam-B_16860 (release 10.0)
#=GF GA   25.00 25.00;
#=GF TC   27.20 26.80;
#=GF NC   22.80 17.30;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   3584058
#=GF RT   Molecular characterization of the virC genes of the Ti plasmid. 
#=GF RA   Close TJ, Tait RC, Rempel HC, Hirooka T, Kim L, Kado CI; 
#=GF RL   J Bacteriol 1987;169:2336-2344.
#=GF RN   [2]
#=GF RM   3759904
#=GF RT   Molecular characterization of a host-range-determining locus
#=GF RT   from Agrobacterium tumefaciens. 
#=GF RA   Yanofsky MF, Nester EW; 
#=GF RL   J Bacteriol 1986;168:244-250.
#=GF DR   INTERPRO; IPR009841;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family consists of several VirC2 proteins which seem to be
#=GF CC   found exclusively in Agrobacterium species and Rhizobium etli.
#=GF CC   VirC2 is known to be involved in virulence in Agrobacterium
#=GF CC   species but its exact function is unclear [1,2].
#=GF SQ   14
#=GS A0A2W4BMC0_9RHIZ/1-200   AC A0A2W4BMC0.1
#=GS A0A1H3FR93_9RHOB/1-111   AC A0A1H3FR93.1
#=GS VIRC2_AGRFC/1-200        AC P07166.1
#=GS VIRC2_AGRFC/1-200        DR PDB; 2RH3 A; 82-200;
#=GS E2CSL0_9RHOB/1-204       AC E2CSL0.1
#=GS A0A2W4D6X2_9RHIZ/1-200   AC A0A2W4D6X2.1
#=GS A0A386E880_9RHIZ/1-200   AC A0A386E880.1
#=GS A0A3L7J4J7_9RHIZ/2-203   AC A0A3L7J4J7.1
#=GS A0A1I3QEQ5_9RHOB/2-108   AC A0A1I3QEQ5.1
#=GS Q2K2E4_RHIEC/1-199       AC Q2K2E4.1
#=GS A0A1I3QF29_9RHOB/2-108   AC A0A1I3QF29.1
#=GS B9K406_AGRVS/3-200       AC B9K406.1
#=GS A0A0M9GM57_9RHOB/1-171   AC A0A0M9GM57.1
#=GS A0A1M7PHZ2_9RHOB/23-192  AC A0A1M7PHZ2.1
#=GS A0A086XUJ3_9RHOB/47-242  AC A0A086XUJ3.1
A0A2W4BMC0_9RHIZ/1-200              ..............................................................................MGIRKPALSVGEARRLAAARPEMVHAHLPVATQNSALPQPPEN..PDQEDRRPAPAVAKRHPSADRQSMLTVDAL.S..STTAPE.KIQVFLSARPPAPQVSKIYDNLILQY.SPSKSLQMILRRALGDFEKML.ADGSFRTAPKSYPIPQTASEKSIIVQTSRMFPVPLLEVARNHFDPLGLETARAFGHKLATAALASFFAGEKT-t......
A0A1H3FR93_9RHOB/1-111              .........................................................................mtika-------------------------------------------..------------------------------.-..------.------SVPLPAPGSSALFDRAEAVY.GAKQALRIILANALRDYEAAL.LAGEVRDLSPEPPRR------SESIQVGRAMDAAAWARARELLDPLGILQEGRLGRMILSQALAWQFRE----eg.....
VIRC2_AGRFC/1-200                   ..............................................................................MGIRKPALSVGEARRLAAARPEIVHPSLPVATQNSTLPQPPEN..LDEEDRRPAPATAKRCHSSDQQSMLTVDAL.S..STTAPE.KIQVFLSARPPAPEVSKIYDNLILQY.SPSKSLQMILRRALGDFENML.ADGSFRAAPKSYPIPHTAFEKSIIVQTSRMFPVSLIEAARNHFDPLGLETARAFGHKLATAALACFFAREKAT.......
#=GR VIRC2_AGRFC/1-200        SS    ..............................................................................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.X..XXXXXX.X-EEEEEE----TTS-HHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHH.HTSGGGGS--------STT-----EEEEEE--HHHHHHHHHHHSTTS-S-HHHHHHHHHHHHHHHHHHHHHHT.......
E2CSL0_9RHOB/1-204                  maikrptvpyaqareqlrqtnqdaqsaeqpnaspvdddenaaerpaenagpsntttdpfpapltnqaetgspvqtpgp-------------------------------------------..-------------------------TKQAR.A..TPGSAS.RMTISVSVPIPQKGVSPFFDALVEDY.SEQEALRYILNEALPAYEALL.LGGKFKKLPKDYPATT------TIVSTRRTFSGEAFEAARKAFDRFGVLSQFKISKMIAQAALASYFKNENA-n......
A0A2W4D6X2_9RHIZ/1-200              ..............................................................................MGIRKPTLSVGEARRLSAARLEIVHPHLPVAPQSLARAQPREK..LDEEDRRPSIAIAKRHHRPARQSILTVDAL.S..PTTAPE.KMQIFLSARPPAPEVSEIYDNLIRQY.SPSKSLQMILRRALGDFENML.ADGSFRAAPKSYPIPQTNSEKSIIVQTSRMFPVPLLEVARNHFDPLGLETTRAFGHKLATAALASFFAGEKT-t......
A0A386E880_9RHIZ/1-200              ..............................................................................MGIRKPALSVGEARRLAAARPEIVHPSLPVATQNSTLPQPPEN..LDEEDRRPAPATAKRCHSSDQQSMLTVDAL.S..STTAPG.KIQVFLSARPPAPEVSKIYDNLILQY.SPSKSLQMILRRALGDFENML.ADGSFRAAPKSYPIPHTAFEKSIIVQTSRMFPVSLIEVARNHFDPLGLETARAFGHKLATAALACFFAREKAT.......
A0A3L7J4J7_9RHIZ/2-203              ..............................................................................MAIRKPRLSVTEARTKATANDSQSANSLP--PRHSSTPSARQQgePGRQRVETPPTDAPT--PPPLQAAVPAPAMlRpiEDAEPEpKVQVFVSAVLPAKGVSPSFDMLCRQY.RPSKALQMILRRALDDYEALL.QSGGYKKCPSSYETVR-LSDQGALIQTSRMMPVALVSVARAHFDPLGLESTRAFGRKLASTALAAFFRAE---akra...
A0A1I3QEQ5_9RHOB/2-108              ..........................................................................asvp-------------------------------------------..------------------------------.-..------.---------LPAPGSSALFDRAEAVY.GAKEALRIILANALRDYEAAL.LAGD------VFGLMAEPARRSEVIQVGRAMDAAAWARARELLDPLGILQEGRLGRMILSQALAWQFRE----ee.....
Q2K2E4_RHIEC/1-199                  ..............................................................................MGIRKPALSVDEAKRLAAARPGIIHPDLQHFSRDAAAPRLPQR..AGHEERRTTSALAKR-SGPESQSIRTVDAL.N..SSTAPE.KVQVFLSARPPAPGVSEIYDSLILQY.SASKSLQMILRRALDDFVTML.MDGSFSKASQSYPIPQETSEKRVIVQTSRMLPVSALKIARDHFDPSGLETSRAFGLKLATAALASFFDAAKA-p......
A0A1I3QF29_9RHOB/2-108              ..........................................................................asvp-------------------------------------------..------------------------------.-..------.---------LPAPGSSALFDRAEAVY.GAKEALRIILANALRDYQTAL.LAGEVRDLCPEPPR------RSESIQVGRAMDAAAWARARELLDPLGILQEGRLGRMILSQALAWQFRE----eg.....
B9K406_AGRVS/3-200                  ..............................................................................MGIHKPALSVGEAKRLAAARPEIVQTVPTRFSQGAQPPRLPER..-GRPLDRPLPTAAKRRDNFDRQLVLTADAL.S..SAAAPE.KIQIFLSARPPAPEVSKIYDTLILQY.SASKSLQMILRRALADFESML.EDGSFSTAPKSYPISH-VVNKPIIVQTSRMFPVSLLELARNHFDPLRLETARAFGHKLATAALASFFATEKT-r......
A0A0M9GM57_9RHOB/1-171              ...................................mgikqpptyvhpnkrktvtpepvrrapqqapkkewpqkkkegt-------------------------------------------..----------------------ELGKQRRL.S..LQSADK.TIRLRLVIYPPTNGQLPLYDQMIASGiEPKTALLGLLKRGFPAFEKKL.TAGSIKAPTNDLDISG------APVDTTRNVSPQFIEAAKALFDPFEILSDRALGRKIAETILV---------qieenep
A0A1M7PHZ2_9RHOB/23-192             .................esvaapveqaaaslagnpkpdhagqataaptipdmgqekqkrraklpakphrrkkpgilvt-------------------------------------------..------------------------------.-..------.-----VDVPLPAAGVSATFDALSRTY.SGKRALALILRKAMPKLERHL.LEGKSKSAPRDYPVQP------GDLKTTRTMPEDAYQLAKVQFDPLDMLPNRQFGRIVALAALAAFFKNEKS-g......
A0A086XUJ3_9RHOB/47-242             .kpdtsppvenvavaepridvpeapaeplvteqkslpadtekttksrkltqtlksesaakpgeassppkpsanadvpe-------------------------------------------..------------------------------.-..-QVAGD.TISLKIRLAFPQTGQSQTYDSLAAQI.GPQQAVRMIFKRAFDDLRQTLrNDGKLPTATP-YAATK----DRF--VTNKIISRNEWNVAKSSLDPAGIMNPMMFNRTLAERALALFFEKDR--qt.....
#=GC SS_cons                        ..............................................................................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.X..XXXXXX.X-EEEEEE----TTS-HHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHH.HTSGGGGS--------STT-----EEEEEE--HHHHHHHHHHHSTTS-S-HHHHHHHHHHHHHHHHHHHHHHT.......
#=GC seq_cons                       .......................................................................................................................................................th.t...tsusp.phplhlSsh.PAPGVStlaDsLhtpY.uspcuLphIL+RALsDaEshL.hsGsh+ssspsYPlsp....cshllQToRhhssshhphARspFDPLGl.osRtFG+plAosALAsFFtp-p..p......
//
DBGET integrated database retrieval system