GenomeNet

Database: Pfam
Entry: ssDNA_TraI_N
LinkDB: ssDNA_TraI_N
Original site: ssDNA_TraI_N 
#=GF ID   ssDNA_TraI_N
#=GF AC   PF18272.2
#=GF DE   single-stranded DNA binding TraI N-terminal subdomain
#=GF AU   Smart A;0000-0002-6965-5633
#=GF SE   PDB:4l0j
#=GF GA   26.40 26.40;
#=GF TC   31.10 29.30;
#=GF NC   24.90 23.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   23710762
#=GF RT   Structure of a translocation signal domain mediating conjugative
#=GF RT   transfer by type IV secretion systems.
#=GF RA   Redzej A, Ilangovan A, Lang S, Gruber CJ, Topf M, Zangger K,
#=GF RA   Zechner EL, Waksman G;
#=GF RL   Mol Microbiol. 2013;89:324-333.
#=GF DR   INTERPRO; IPR040987;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This is a subdomain found in TraI present in E. coli. Tra1 is a
#=GF CC   conjugative relaxase that forms part of the Type IV secretion
#=GF CC   system. This subdomain, referred to as 2A, is located in
#=GF CC   N-terminal region of the translocation signal (TSA) domain. TSA
#=GF CC   is known to reside in a larger ssDNA-binding domain [1].
#=GF SQ   22
#=GS A0A1I5B9V4_9ENTR/579-631  AC A0A1I5B9V4.1
#=GS A0A377YWM1_KLEPO/575-627  AC A0A377YWM1.1
#=GS A0A2X2PX87_RAOPL/576-628  AC A0A2X2PX87.1
#=GS A0A0H3H1C0_KLEPH/576-628  AC A0A0H3H1C0.1
#=GS A0A0J8YDR6_9GAMM/573-625  AC A0A0J8YDR6.1
#=GS A0A0J8VKS9_9ENTR/660-712  AC A0A0J8VKS9.1
#=GS W1DQC2_KLEPN/577-629      AC W1DQC2.1
#=GS A0A2V1H7J9_9GAMM/578-630  AC A0A2V1H7J9.1
#=GS A0A2X2S369_RAOPL/576-628  AC A0A2X2S369.1
#=GS A6TIJ2_KLEP7/577-629      AC A6TIJ2.1
#=GS A0A2A2GQZ3_9GAMM/570-622  AC A0A2A2GQZ3.1
#=GS D8MK72_ERWBE/628-680      AC D8MK72.1
#=GS A0A1E7YZ50_9GAMM/573-625  AC A0A1E7YZ50.1
#=GS A0A077ZHS7_TRITR/582-634  AC A0A077ZHS7.1
#=GS W1EDJ1_KLEPN/163-215      AC W1EDJ1.1
#=GS A0A378BVT2_KLEPR/577-629  AC A0A378BVT2.1
#=GS A0A0J8YDH0_9GAMM/616-668  AC A0A0J8YDH0.1
#=GS A0A085FZ02_9ENTR/614-666  AC A0A085FZ02.1
#=GS Q326X3_SHIDS/435-482      AC Q326X3.1
#=GS A0A0H2USH5_SHIFL/1-37     AC A0A0H2USH5.1
#=GS D4EA24_SEROD/580-632      AC D4EA24.1
#=GS Q93GL4_SALTY/574-626      AC Q93GL4.1
A0A1I5B9V4_9ENTR/579-631             .DKKVRYSHLAAEYARDVIGGNSVIAQVAGEREQQVLTGYIRDALREQG-----riagd
A0A377YWM1_KLEPO/575-627             .DRNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTQAIRSELKTQGVLGH-p....
A0A2X2PX87_RAOPL/576-628             e-KGARYSRLAQEFAASVREGQESVAQISGSREQGILNGLIRETLKSEGVLGEK.....
A0A0H3H1C0_KLEPH/576-628             .DKGARYSRLAQEFAVSVREGQESVAQISGTREQSVLNGLIRDSLRQEGVLGEK.....
A0A0J8YDR6_9GAMM/573-625             .DRRQRYDRMAAEFARSVRAGEQSVAQVAGPREQAVLAGIVREALKAEKVLGGR.....
A0A0J8VKS9_9ENTR/660-712             .DKRVRYEALANRYAELSAGSEPVTAVVLGQREQKHLTGLIRDALQNAGQL---erd..
W1DQC2_KLEPN/577-629                 .DKGARYSRLAQEFAVSVREGQESVAQISGTREQSVLNGLIRDSLRQEGVLGEK.....
A0A2V1H7J9_9GAMM/578-630             .DKAQRFGKLARDYAKAVQSGEESVVQVSGIRNQKELNQQVREALKESDVLGRE.....
A0A2X2S369_RAOPL/576-628             .DKGARYSRLAQEFAVSVREGQESVAQISGVREQGVLNGIIREVLKNEGTLGAK.....
A6TIJ2_KLEP7/577-629                 .DKGARYSRLAQEFAVSVREGQESVAQISGTREQSVLNGLIRDSLRQEGVLGEK.....
A0A2A2GQZ3_9GAMM/570-622             .DKTARLKKLAKDYTRTLAQGIDSVAQITGNREQKHLTGYIREALKTQELLGK-n....
D8MK72_ERWBE/628-680                 .DKRDRYRALAERYADLSGLDATVTASVVGAREQQQLTGLIRDALQNAGKLGRE.....
A0A1E7YZ50_9GAMM/573-625             .DRRQRYDRLAADFARSVRAGEHSVAQVTGPREQAVLAGVVREALKAEKVLGER.....
A0A077ZHS7_TRITR/582-634             .DRNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTQAIRSELKTQGVLGH-p....
W1EDJ1_KLEPN/163-215                 .DKGARYSRLAQEFAVSVREGQESVAQISGTREQSVLNGLIRDSLRQEGVLGEK.....
A0A378BVT2_KLEPR/577-629             .DKGARYSRLAQEFAVSVREGQESVAQISGTREQSVLNGLIRDSLRQEGVLGEK.....
A0A0J8YDH0_9GAMM/616-668             .DKRDRYRALAERFADLSGPDAPVTAVVVGQREQKQLTGIIRDALQNAGKL---ere..
A0A085FZ02_9ENTR/614-666             n-KRDRYEALATRFADLSHGDENVTAVVVGKREQTHLTGLIRDALQNAGQL---srd..
Q326X3_SHIDS/435-482                 .DRNVRYARLAGDFAASVKAGEESVAQVSGVREQA-----IRSELKTQGVLGH-p....
A0A0H2USH5_SHIFL/1-37                m-----------------KAGEESVAQVSGVREQAILTQAIRSELKTQGVLGH-p....
D4EA24_SEROD/580-632                 .DKAQRFGQLAKGVVQALAEDRPSVAQVNGPADQRMLTAMIRDELKETGLLGRE.....
Q93GL4_SALTY/574-626                 .DRNVRYARLAGDFVAAVKAGEESVAQVSGMREQAILAGMIRSELKTQGILGQQ.....
#=GC seq_cons                        .DKssRYu+LAp-FAsuV+tGp-SVAQVoGsREQulLsGhIR-uL+spGlLGc......
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