GenomeNet

Database: Pfam
Entry: zf-CCHC_5
LinkDB: zf-CCHC_5
Original site: zf-CCHC_5 
#=GF ID   zf-CCHC_5
#=GF AC   PF14787.7
#=GF DE   GAG-polyprotein viral zinc-finger
#=GF AU   Coggill P;0000-0001-5731-1588
#=GF SE   CATH:1cl4_A_00
#=GF GA   27.00 27.00;
#=GF TC   27.00 27.10;
#=GF NC   26.90 26.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   9827993
#=GF RT   Solution structure and backbone dynamics of Mason-Pfizer monkey
#=GF RT   virus (MPMV) nucleocapsid protein.
#=GF RA   Gao Y, Kaluarachchi K, Giedroc DP;
#=GF RL   Protein Sci. 1998;7:2265-2280.
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF SQ   75
#=GS H8MJP2_CORCM/77-106       AC H8MJP2.1
#=GS PRO_MMTVC/550-585         AC Q9IZT2.1
#=GS A0A3Q2UER0_CHICK/295-331  AC A0A3Q2UER0.1
#=GS A0A2K5UQ89_MACFA/607-631  AC A0A2K5UQ89.1
#=GS G3H3Y2_CRIGR/398-427      AC G3H3Y2.1
#=GS GAK7_HUMAN/578-613        AC P63130.2
#=GS L0MXX7_9RETR/577-612      AC L0MXX7.1
#=GS GAK19_HUMAN/578-613       AC Q9YNA8.3
#=GS U3KLZ9_RABIT/409-442      AC U3KLZ9.1
#=GS POL_MMTVB/550-585         AC P03365.3
#=GS F0ZWL4_DICPU/81-109       AC F0ZWL4.1
#=GS GAK5_HUMAN/578-613        AC Q9HDB9.3
#=GS W5NWY3_SHEEP/422-448      AC W5NWY3.1
#=GS A4RYW2_OSTLU/146-178      AC A4RYW2.1
#=GS A0A3M0K772_HIRRU/337-370  AC A0A3M0K772.1
#=GS A0A3Q1MDY7_BOVIN/646-681  AC A0A3Q1MDY7.1
#=GS A0A1S3GBH0_DIPOR/468-511  AC A0A1S3GBH0.1
#=GS POK9_HUMAN/578-613        AC P63128.3
#=GS GAK21_HUMAN/578-613       AC P62683.2
#=GS A0A443S9W4_9ACAR/214-245  AC A0A443S9W4.1
#=GS A0A493TP09_ANAPP/411-446  AC A0A493TP09.1
#=GS A0A3Q0D7F9_MESAU/486-522  AC A0A3Q0D7F9.1
#=GS F2UTR1_SALR5/214-245      AC F2UTR1.1
#=GS A0A2K5UK13_MACFA/607-642  AC A0A2K5UK13.1
#=GS K7DZI7_MONDO/427-451      AC K7DZI7.1
#=GS W5PYM4_SHEEP/435-468      AC W5PYM4.1
#=GS A0A0Q3R7V4_AMAAE/616-650  AC A0A0Q3R7V4.1
#=GS POL_MMTVC/550-585         AC P11283.2
#=GS GA113_HUMAN/578-613       AC P62684.2
#=GS A0A3M0L9C1_HIRRU/347-380  AC A0A3M0L9C1.1
#=GS A0A3M0KE47_HIRRU/491-525  AC A0A3M0KE47.1
#=GS F2U3D2_SALR5/292-323      AC F2U3D2.1
#=GS M3Z829_MUSPF/532-567      AC M3Z829.1
#=GS F0ZXC2_DICPU/81-109       AC F0ZXC2.1
#=GS W5PYM6_SHEEP/429-462      AC W5PYM6.1
#=GS A0A3M0JXK3_HIRRU/340-375  AC A0A3M0JXK3.1
#=GS Q55C13_DICDI/98-126       AC Q55C13.1
#=GS W5PN27_SHEEP/470-503      AC W5PN27.1
#=GS A0A3Q1MCS8_BOVIN/652-685  AC A0A3Q1MCS8.1
#=GS PRO_MMTVB/550-585         AC P10271.2
#=GS GAK8_HUMAN/578-613        AC P62685.2
#=GS A4RYW2_OSTLU/101-136      AC A4RYW2.1
#=GS A0A286ZR86_PIG/422-458    AC A0A286ZR86.1
#=GS A0A443QSP4_9ACAR/47-82    AC A0A443QSP4.1
#=GS W5QAV8_SHEEP/516-549      AC W5QAV8.1
#=GS A0A452EDM5_CAPHI/539-574  AC A0A452EDM5.1
#=GS A0A452FIS5_CAPHI/536-560  AC A0A452FIS5.1
#=GS GAK9_HUMAN/578-613        AC P63126.2
#=GS F2UGZ1_SALR5/238-269      AC F2UGZ1.1
#=GS GAK6_HUMAN/578-613        AC Q7LDI9.3
#=GS A0A1S3WTL7_ERIEU/493-526  AC A0A1S3WTL7.1
#=GS A0A3Q1M3E7_BOVIN/488-521  AC A0A3Q1M3E7.1
#=GS A0A287A247_PIG/478-513    AC A0A287A247.1
#=GS F2UTD0_SALR5/238-269      AC F2UTD0.1
#=GS F1A4G4_DICPU/81-109       AC F1A4G4.1
#=GS GAG_MMTVC/550-585         AC P11284.3
#=GS GAG_MMTVC/550-585         DR PDB; 1DSV A; 54-84;
#=GS W5Q301_SHEEP/289-313      AC W5Q301.1
#=GS M3Z7B6_MUSPF/336-353      AC M3Z7B6.1
#=GS A0A3M0K936_HIRRU/33-67    AC A0A3M0K936.1
#=GS A0A443RUG2_9ACAR/205-239  AC A0A443RUG2.1
#=GS A0A3N4LAI2_9PEZI/78-111   AC A0A3N4LAI2.1
#=GS GAK10_HUMAN/578-613       AC P87889.4
#=GS GAK24_HUMAN/578-613       AC P63145.2
#=GS A0A3M0LGP7_HIRRU/327-360  AC A0A3M0LGP7.1
#=GS E3FGG7_STIAD/71-100       AC E3FGG7.1
#=GS W5PTJ8_SHEEP/394-427      AC W5PTJ8.1
#=GS W5PTJ9_SHEEP/388-421      AC W5PTJ9.1
#=GS W5PXQ0_SHEEP/536-571      AC W5PXQ0.1
#=GS A0A2U3ZZG9_ODORO/484-510  AC A0A2U3ZZG9.1
#=GS G3VAP7_SARHA/94-114       AC G3VAP7.1
#=GS GAG_MMTVB/550-585         AC P10258.3
#=GS W5Q0G1_SHEEP/470-498      AC W5Q0G1.1
#=GS W5Q300_SHEEP/469-497      AC W5Q300.1
#=GS A0A3Q1MXP9_BOVIN/455-490  AC A0A3Q1MXP9.1
#=GS A0A1S3WS04_ERIEU/474-508  AC A0A1S3WS04.1
H8MJP2_CORCM/77-106                  ....d-PDACFRCGRSGHWAENCYAKTDFEGDA..-..-------id...............
PRO_MMTVC/550-585                    .....PPGLCPRCKKGYHWKSECKSKFDKDGNP..L..PPLETN-a................
A0A3Q2UER0_CHICK/295-331             .ptqp----CPRCRRGLRWARECRSKLPVAAQPfdL..PGN----gkk..............
A0A2K5UQ89_MACFA/607-631             .....PPGLCPRCKKGKHWGNQCRSKFDKN---..-..-------.................
G3H3Y2_CRIGR/398-427                 ....q-PGLCPRCRKGNHWAKDCRSVKDISGQP..-..-------fi...............
GAK7_HUMAN/578-613                   .....PPDLCPRCKKGKHWASQCRSKFDKNGQP..L..SGNEQRG.................
L0MXX7_9RETR/577-612                 ....v-PGVCPRCKRGKHWANECKSKTDSQGNP..L..PPHQGNG.................
GAK19_HUMAN/578-613                  .....PPDLCPRCKKGKHWASQCRSKFDKNGQP..L..SGNEQRG.................
U3KLZ9_RABIT/409-442                 ..pst---PCPRCHRGYHWANECRSKTNSSGQP..L..PP-----svp..............
POL_MMTVB/550-585                    .....PPGLCPRCKKGYHWKSECKSKFDKDGNP..L..PPLETN-a................
F0ZWL4_DICPU/81-109                  ...ek--NTCFNCGRTSHWAQDCYASYDINGNR..L..-------.................
GAK5_HUMAN/578-613                   .....PSGLCPKCGKGKHWANQCHSKFDKDGQP..L..SGNRKRG.................
W5NWY3_SHEEP/422-448                 ....s-PSLCPHCQKGYHWAKDCKSRFHRNG--..-..-------t................
A4RYW2_OSTLU/146-178                 ...vr---RCARCGRASHSAPSCFAKFDIDGER..L..-------fwger............
A0A3M0K772_HIRRU/337-370             ....s-PGLCPRCRRGKHHVSQCYSKMDVDGRP..L..PLLE---n................
A0A3Q1MDY7_BOVIN/646-681             ....p-RSLCPRCQRGYHWARDCRSRFHRNGAF..L..GPDQQS-g................
A0A1S3GBH0_DIPOR/468-511             ....r---KCPRCNKGRHWARDCKSTFDSAGRP..I..-------lenwqrgqplvpqqknr
POK9_HUMAN/578-613                   .....PPDLCPRCKKGKHWASQCRSKFDKNGQP..L..SGNEQRG.................
GAK21_HUMAN/578-613                  .....PPDLCPRCKKGKHWASQCRSKFDKNGQP..L..SGNEQRG.................
A0A443S9W4_9ACAR/214-245             ....a-PGLCTKCKKGYHWASECRSVRDISGKL..-..-------llah.............
A0A493TP09_ANAPP/411-446             .....PPTICPRCGKGWHWARQCRWKHNAEGQP..A..QPRRGH-g................
A0A3Q0D7F9_MESAU/486-522             ....v-PGLCPLCKSGYHWARNCRSKTVLQGYS..Q..PP-----sgngnr...........
F2UTR1_SALR5/214-245                 ....p----CSRCGRTNHVVSDCHARRHVNGKQ..L..DGP----tat..............
A0A2K5UK13_MACFA/607-642             .....PPGLCPRCKKGKHWGNQCRSKFDKNGQP..L..SGNERRG.................
K7DZI7_MONDO/427-451                 ....v-PGLCPRCKRSRHWASKCR---------..-..-------ysasqn...........
W5PYM4_SHEEP/435-468                 .....PPKICLCCRRGMHWAEDRKSKFDVEGKP..I..SGNSK--.................
A0A0Q3R7V4_AMAAE/616-650             ....g--GTCRKCDKFGHRANECQSRFKKDGTP..I..PGNGRN-s................
POL_MMTVC/550-585                    .....PPGLCPRCKKGYHWKSECKSKFDKDGNP..L..PPLETN-a................
GA113_HUMAN/578-613                  .....PPDLCPRCKKGKHWASQCRSKFDKNGQP..L..SGNEQRG.................
A0A3M0L9C1_HIRRU/347-380             ....y----CARCGRLNHAANACEATVHVNGQP..LgsS------gnatr............
A0A3M0KE47_HIRRU/491-525             .....PSKVCSRCKKGYHWSNECHSKYDKDGKP..L..PQ-----wqkl.............
F2U3D2_SALR5/292-323                 ....p----CSRCGRTNHVVSDCHARRHVNGKQ..L..DGP----tat..............
M3Z829_MUSPF/532-567                 .....PPLLCPKCQRGYHWANECRSQKDKFGNI..I..QGNW---rrg..............
F0ZXC2_DICPU/81-109                  ...ek--NSCFNCGRTSHWAQDCYASYDIDGNR..L..-------.................
W5PYM6_SHEEP/429-462                 .....PPKICLCCRRGMHWAEDRKSKFDVEGKP..I..SGNSK--.................
A0A3M0JXK3_HIRRU/340-375             ....i-PDVCPQCHKGCHFAKQCGSKYDSEGRP..V..QGNQN--qs...............
Q55C13_DICDI/98-126                  ....e-SNCCFRCGRGSHWSSSCYASNDIDGNE..L..-------.................
W5PN27_SHEEP/470-503                 ....v-PSLCPKCKKGNHWANQCRSKFHKDGTP..L..WGN----gs...............
A0A3Q1MCS8_BOVIN/652-685             ....p-RSLCPRCQKGYHWARHCRSRFHRNGTF..L..GPNQQ--.................
PRO_MMTVB/550-585                    .....PPGLCPRCKKGYHWKSECKSKFDKDGNP..L..PPLETN-a................
GAK8_HUMAN/578-613                   .....PPDLCPRCKKGKHWASQCRSKFDKNGQP..L..SGNEQRG.................
A4RYW2_OSTLU/101-136                 .....REGRCLRCGRRTHVARDCFARAHVNGYA..L..SAPEGSR.................
A0A286ZR86_PIG/422-458               ....n-PGLCPRCQKGNHWANQCRSKFHRNGTP..L..TT-----lvsgng...........
A0A443QSP4_9ACAR/47-82               ....s-PGTCPKCKRGARWSTECRSSTDAFENP..L..PKN----gikg.............
W5QAV8_SHEEP/516-549                 ...tp----CPQCQKGYHWAKACRSKFHKDGTT..L..TPQ----fqgn.............
A0A452EDM5_CAPHI/539-574             .....TPNLCPRCKKGKHWARDCRSKTDVQGNP..L..PPVSGNW.................
A0A452FIS5_CAPHI/536-560             ....i-PNLCPRCKKGKHWARDCRSKTDIQ---..-..-------.................
GAK9_HUMAN/578-613                   .....PPDLCPRCKKGKHWASQCRSKFDKNGQP..L..SGNEQRG.................
F2UGZ1_SALR5/238-269                 ....p----CSRCGRTNHVVSDCHARRHVNGKQ..L..DGP----tat..............
GAK6_HUMAN/578-613                   .....PPDLCPRCKKGKHWASQCRSKFDKNGQP..L..SGNEQRG.................
A0A1S3WTL7_ERIEU/493-526             ....q-PGLCPRCKKGNHWANECRSVKDINGQP..L..S------qgyg.............
A0A3Q1M3E7_BOVIN/488-521             .pktp----CLRCQKGYHWTKDCRSKFHKNGTL..L..VP-----dqq..............
A0A287A247_PIG/478-513               ....q-PRLCPRCNKGNHWANQCRSIFHKDGTP..L..LGNYSR-g................
F2UTD0_SALR5/238-269                 ....p----CSRCGRTNHVVSDCHARRHVNGKQ..L..DGP----tat..............
F1A4G4_DICPU/81-109                  ...ek--NSCFNCGRTSHWAQDCYASYDVDGNR..L..-------.................
GAG_MMTVC/550-585                    .....PPGLCPRCKKGYHWKSECKSKFDKDGNP..L..PPLETN-a................
#=GR GAG_MMTVC/550-585         SS    .....---B-TTT-SSBS-TTT---SEEGGGEE..-..--XXXX-X................
W5Q301_SHEEP/289-313                 ....p-LGLCRRCGKGKHWTQECKSKTDR----..-..-------e................
M3Z7B6_MUSPF/336-353                 .....RPGLCPRCGKGAHWANEC----------..-..-------.................
A0A3M0K936_HIRRU/33-67               ....s-PGLCPRCRRGKHHANQCYSKMDVDGRP..L..TSSR---kl...............
A0A443RUG2_9ACAR/205-239             ...rq---VCPRCRKGPHKAVDCRSTRDIDGNP..L..HSKNG--kq...............
A0A3N4LAI2_9PEZI/78-111              ...da--NTCNRCGRRDHFANTRFSKKHKDGSV..L..P------ehta.............
GAK10_HUMAN/578-613                  .....PPDLCPRCKKGKHWASQCRSKFDKNGQP..L..SGNEQRG.................
GAK24_HUMAN/578-613                  .....PPDLCPRCKKGKHWASQCRSKFDKNGQP..L..SGNEQRG.................
A0A3M0LGP7_HIRRU/327-360             ....y----CARCGRPNHAANACKATVHVNGQS..L..G------ssgnatq..........
E3FGG7_STIAD/71-100                  ...hr--NACFRCGRTSHWSSNCFAVTDFTGRP..L..-------m................
W5PTJ8_SHEEP/394-427                 .....PPKICLCCRRGMHWAEDRKSKFDVEGKP..I..SGNSK--.................
W5PTJ9_SHEEP/388-421                 .....PPKICLCCRRGMHWAEDRKSKFDVEGKP..I..SGNSK--.................
W5PXQ0_SHEEP/536-571                 .....TPNLCPRCKKGKHWARDCHSKTDVQGNP..L..PPVSGNW.................
A0A2U3ZZG9_ODORO/484-510             ....a-PSLCLCCGKGKHWAKECKSKFDRQ---..-..-------aa...............
G3VAP7_SARHA/94-114                  .....PKTLCPKCNRGFHWASECR---------..-..-------lt...............
GAG_MMTVB/550-585                    .....PPGLCPRCKKGYHWKSECKSKFDKDGNP..L..PPLETN-a................
W5Q0G1_SHEEP/470-498                 iapha--------TKGYHWTKDCRSKFHKDGTT..L..-------tlq..............
W5Q300_SHEEP/469-497                 ....p-LGLCRRCGKGKHWTQECKSKTDREGNP..L..-------.................
A0A3Q1MXP9_BOVIN/455-490             .....PPGVCPRCKRGFHWLNECHSKFDKDRNT..L..NPGA---qqk..............
A0A1S3WS04_ERIEU/474-508             ..akt---LCSWCQKGYHQRKECRSKMHKDGTP..L..PD-----fdkd.............
#=GC SS_cons                         .....---B-TTT-SSBS-TTT---SEEGGGEE..-..--XXXX-X................
#=GC seq_cons                        ......PslCPRCp+GtHWAscC+SKhDhsGpP..L..ss......................
//
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