KEGG   Pseudomonas synxantha LBUM223: VO64_1655
Entry
VO64_1655         CDS       T03769                                 
Name
(GenBank) RNA polymerase sigma-70 factor, ECF subfamily
  KO
K03088  RNA polymerase sigma-70 factor, ECF subfamily
Organism
pfb  Pseudomonas synxantha LBUM223
Brite
KEGG Orthology (KO) [BR:pfb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pfb03021]
    VO64_1655
Transcription machinery [BR:pfb03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     VO64_1655
SSDB
Motif
Pfam: DUF6596 Sigma70_r2 Sigma70_r4_2 TPR_12 TPR_2 TPR_1 TPR_4 TPR_8 TPR_16 TPR_7 TPR_11 TPR_21 TPR_14 Sigma70_r4 TPR_10 DUF2357
Other DBs
NCBI-ProteinID: AKA82201
Position
complement(1846052..1847338)
AA seq 428 aa
MTLNGQVEAVYRSESRRVLATLIRVLGDFDLAEEALHEAFFVAVQRWPEDGVPDNPRAWL
VSTGRFKAIDRLRRQARFTPLLQEQADTLEAAQWSDEDVEDDRLRLIFTCCHPALAPDAQ
AALTLREICDLSTEAIAHAFLATPTTIAQRIVRAKGKIREAKIPYQVPSRGELPERLDSV
LRVIYLVFNEGYSASTGTDLTREDLTAEAIRLGRLLMELLPEPEVMGLLALMLLHESRRP
ARTSANGELVLLDAQDRGLWDTSLMAEGCALVEQALNTRRFGPYCLQAAIAAVHAEAPSA
EQTDWRQIVGLYDVLLRAMPSPVVELNRAVAVAMEQGPTAGLTLVDSILQRGELQDYHLA
HSARGEFCRQLGRVGEARAAYEKALSLTQQTPEKRFLKRRLTELKSPRQRSSKCGRGLAP
DCGVSGKD
NT seq 1287 nt   +upstreamnt  +downstreamnt
atgacgctcaatggccaggtcgaagcggtttaccgcagcgagtcacggcgtgtgcttgca
acgctgattcgtgtgctgggtgatttcgacctggccgaagaggcgctgcacgaggcattt
ttcgttgccgtgcagcgctggcccgaggacggtgtgccggataatccacgggcctggctg
gtatcaaccggtcgcttcaaagccatcgaccgtctacgtcgccaggcgcggtttaccccg
ttgctgcaagagcaggccgacacactggaagcggcgcagtggagtgatgaagacgtggaa
gacgatcgcctgcgcctgatcttcacctgctgccacccggcgttggcgcccgatgcccag
gcggcgctgaccttgcgcgagatctgcgacctgagtaccgaggccattgcccacgcgttt
ctcgccacacccaccaccatcgcccagcgcatcgtgcgtgccaagggcaagatccgtgaa
gcgaaaatcccctatcaagtgccgtcccgtggcgagttgcccgagcgcctggacagcgtg
ctgcgggtgatttacctggtgttcaacgaaggctactcggcctccacaggcaccgatctc
acccgtgaagacttgaccgcggaggccattcgcctgggccgcttgctgatggagttgcta
ccggagccggaagtcatgggcttgctggcgttgatgttgctgcacgaatcgcgccgcccg
gcacgcacctcggccaatggtgaattggtgctgttggatgctcaggatcgtgggctgtgg
gatacgtccttgatggctgaaggctgcgcattggtggagcaggcgctgaacacgcgacgc
ttcgggccatattgcctgcaagcagcgattgcggcggtgcacgccgaggcgccgagtgcc
gagcagactgattggcggcagattgtcgggctctacgatgtattgctcagggccatgcca
tcgccggtggtcgagttgaaccgtgcggtagcggtggcgatggaacagggaccgacagct
ggattgacattggtggacagcattttgcaacgcggtgagttgcaggattaccacttggcg
cattcggcgcggggggaattctgccggcagttgggacgggttggagaggcccgtgcagct
tacgaaaaagccctgtcgctgacccagcaaaccccggaaaaacgcttcctgaagcgacgc
ctgaccgaactcaaatcccccagacaaagaagctccaaatgtgggagggggcttgccccc
gattgcggtgtgtcaggtaaagattag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (16)   
   Pfam (16)   
All databases (22)   

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