KEGG   Pseudomonas simiae PICF7: PFLUOLIPICF701950
Entry
PFLUOLIPICF701950 CDS       T03767                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
pff  Pseudomonas simiae PICF7
Pathway
pff03030  DNA replication
pff03430  Mismatch repair
pff03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pff00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PFLUOLIPICF701950 (dnaE)
   03430 Mismatch repair
    PFLUOLIPICF701950 (dnaE)
   03440 Homologous recombination
    PFLUOLIPICF701950 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pff03032]
    PFLUOLIPICF701950 (dnaE)
   03400 DNA repair and recombination proteins [BR:pff03400]
    PFLUOLIPICF701950 (dnaE)
Enzymes [BR:pff01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     PFLUOLIPICF701950 (dnaE)
DNA replication proteins [BR:pff03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     PFLUOLIPICF701950 (dnaE)
DNA repair and recombination proteins [BR:pff03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     PFLUOLIPICF701950 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 DNA_pol_IIIA_C tRNA_anti-codon tRNA_anti_2 HROB
Other DBs
NCBI-ProteinID: AJZ92414
Position
complement(414620..418141)
AA seq 1173 aa
MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG
IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV
AEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEH
LHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLK
SAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL
EERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
AEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYT
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAI
KGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFYDEP
KAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
IKRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGELLKRHRGACPVTMEYTGSDAKAM
LQFGETWRIDPADGLIQALRDQFGRDNVFLQYR
NT seq 3522 nt   +upstreamnt  +downstreamnt
atgccggcttcattcgttcacctacgcctgcacactgaatactccctggtcgacggcctg
gtacggatcaaaccgctggtcaaaaccctggtgggtatgaacatgcctgcggtcgcggtg
accgatcagaacaacatgtgttccctggtcaagttctacaagaacgccatgggcgccggt
atcaagccgatctgcggcgctgacctgtggctgtccaacaaagacccggataaccccctg
agccgcatcagcctgttggcgatgaacggcgtgggttatcgcaaccttaccgaactgatt
tcccgcggtttcatcgatggccagcgcaatggttcgatcatcatcgagcgcgaatgggtt
gccgaggccagcgaaggcctgatcatgctgtcggccgccaaagagggcgagatcggtatc
gcgctgctgggtggcaacccccaggaagctgaagtactggccaaggagtggatgcaggtc
ttccccgatcgcttttacctggaagtccagcgcaccaatcgccccaacgatgaagagcac
ctgcacgccgccgtggccctggccgacaagctgggggcgccactggtcgccaccaacgac
gtgcgctttatcaagaaggaagatttcgaggcccacgaaacccgcgtgtgcatcggtgaa
ggccgggccctggatgacccgcgccgctccaagaactacagcgaagagcagtacctcaag
agcgcggaggagatggccgagctgttcagcgacctgcccgaggccctggaaaactccgtc
gaaatcgccaaacgctgcaatatcgaagtgaagctgggcaaacactttttgcccaacttc
ccgattcccgatggcatgaccatcgatgagtacttccgcaaggtgtcgtttgatggtctg
gaggagcgtctttccgtcctgctgcccaaggacaccaccgaagattacgaggccaagcgc
caggtttatgtcgatcggctgaatttcgagctggatatcatcatccagatgggcttcccc
ggttacttcctgatcgtaatggactttatccagtgggccaaaaacaacggcgtaccggta
gggccgggccgggggtcgggtgccggctcgctggtggcctacgtgcagaagattaccgac
ctggatccgctagaatatgacctgctgttcgagcggttcctgaacccggaacgggtttcc
atgcccgacttcgacgtcgacttctgcatggacggccgtgaccgcgtgatcgaatacgtg
gccgagaaatacggccgcaacgcggtaagccagatcatcaccttcggttccatggcggcg
aaggctgtaattcgcgacgtggcgcgcgttcagggcaagtcctacggcctggcggatcgt
ctgtcgaagatgatcccgttcgaagtcggcatgaccctggaaaaagcctacgagcaggaa
gagatcctgcgcgacttcatcaagatcgatgaagaggccgccgaaatctgggacatggcc
cgcaagcttgaaggcgtggtgcgtaacgtcggtaaacacgccggcggtgtggtgatcgcg
cctacaaaactcaccgacttttcgccgatttattgcgatgaggaaggcggcggcctggtc
acccagttcgacaaggacgacgtggaggcggccggcctggtgaagttcgacttccttggc
ctgcgaaccctgacgatcatcgactgggcgctcaagaccatcaaccgcgaccgcgccaag
gtcaatgaagagccgctggatatcgcgtttatcccgctggacgacaaaccgacttacacc
ttgctgcaaaaagccgaaaccacggcggtgttccagcttgagtcgcggggcatgaaagag
ctgatcaaaaagctcaagcccgactgcctggaagacttgatcgcactggtggccctgttc
cgtccgggtccgctgcagtccggcatggtggacgacttcatcaaccgtaagcacggtcgc
gcggagctggcgtatccgcactccgactaccagtacgaaggcctcaagccagtactggcg
ccgacctacggcatcatcctgtatcaggaacaggtgatgcagatcgcccaggtgatggcc
ggctataccctcggcggcgcggacatgctgcgtcgagccatgggtaagaaaaaacccgaa
gaaatggccaagcagcgcggcggtttcattgagggttgcgcgaccaacaatatcgacgcg
gacctggccggtaacattttcgacctggtggaaaaattcgccggttatggcttcaacaaa
tcccactccgccgcgtacggcctggtgtcgtaccagaccgcctggctgaaagcgcactac
ccggcgccgttcatggcggcggttctctcggcggatatgcacaacaccgacaaggtcgtg
accttgatcgaggaagtgcgcaccatgaagctgcgtctcgacgcaccggacgtgaacgcc
tcggagttcaagttcacggtaaacgacgaaggccgcattatttatgggttgggcgcgatc
aagggggtgggtgaaggcccggtggaagccatcaccgaagcgcgccaggacggacccttc
aaggatctgttcgacttctgcgcgcgggttgacctcaagcgcatcaacaaacggaccctc
gatggtctgatccgtagcggtgcgctcgaccgtctcggcccgtatttttacgacgagccc
aaggcttaccaggcgaatatcgaccggaaccgtgcggtattgctcaccgccatggaagaa
gcgatcaaggccgccgaacaaaccgcccgtacccacgacagcggccacgccgatctgttt
ggcggtttgttcgtcgaagaggatgccgatgtatatggcaaccatcgcaaggccaaggag
ctgacgctcaaggagcgcctcaagggtgagaaagacaccctgggcctgtacctcaccggc
cacccgattgacgaatacgaaggtgaaatccgccgtttcgcccgtcagcgaatcatcgac
ctgaaacctgcgcgggatacccagaccgtcgccggcatgatcatcgccctgcgggtgatg
aagaataaaaagggcgacaagatggggttcatcaccctcgacgaccgttcggggcgcatc
gaagcctcgctgttcgccgacgcgttccactccgcgcagtcgctgttgcagaccgacgcc
atggtggtagtggaaggggaggtcagcaacgatgacttctccggcggcctgcgcctgcgg
atcaagcgggtgatgagcatggaagacgcgcgcaccaatctggccgaaagcctgcgcttg
aaggtgaaaaccgaggcgctcaagggcgatcagctacgctggttgggtgagttgctcaaa
cgccaccgtggcgcgtgcccggtgaccatggagtacaccggcagtgacgccaaggccatg
ttgcagtttggggagacctggcgaatcgatccggctgatggcttgattcaagcattgcgt
gaccagttcggccgtgacaacgtcttcctccaataccgttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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