KEGG   Pandoraea faecigallinarum: AB870_09995
Entry
AB870_09995       CDS       T03972                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pfg  Pandoraea faecigallinarum
Pathway
pfg03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pfg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AB870_09995
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pfg03021]
    AB870_09995
   03400 DNA repair and recombination proteins [BR:pfg03400]
    AB870_09995
Enzymes [BR:pfg01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AB870_09995
Transcription machinery [BR:pfg03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AB870_09995
DNA repair and recombination proteins [BR:pfg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AB870_09995
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C ApbA_C Baculo_ME53
Other DBs
NCBI-ProteinID: AKM30371
UniProt: A0A0H3WV19
Position
complement(4888245..4892456)
AA seq 1403 aa
MKALLDLFKQVQQDEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVLEPGMTPLKRCQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRSIDIDQQVEHLRAELQATGSEAKIKKYAKRLKVLEAFQRSGIKPEWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPT
LKLHQCGLPKLMALELFKPFIFHKLEVMGVATTIKAAKKEVENQTAVVWDILEEVIREHP
IMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATRDKINGHGEGLSFTDVSEVLRAYDNK
EVELASRVNVRITEYTVDPETGEKTPKVTLYPTTVGRAILSEILPPGLPFSVLNKSLKKK
EISKLINTAFRRCGLRETVIFVDKLMQSGFRLATRAGISICVDDMLVPTKKEELIGEASK
KVKEYDRQYMSGLVTAQERYNNVVDIWGATGDAVGKAMMEQLSKEKTIDRDGNAVDQESF
NSIYMMADSGARGSSAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEALRDRI
LGRVAVADVVNPETQETVYEAGTLLDEDVVEMIESLGIDEVRVRTPLTCDTRYGLCAACY
GRDLGRGSRVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSIEAKSNGTVR
FTATMRYVTNGKGEQIAISRSGEILITDDHGRERERHKVPYGATLLQLDGAQVKAGAQLG
TWDPLTRPIITEHGGFAKFENVEEGVTVAKQIDDVTGLSTLVVIDPKRRGPASKNVRPQV
KLLDENGVEVKIPGTDHPVTIGFQVGALITIKDGQPVPVGEVLARIPTEAQKTRDITGGL
PRVAELFEARAPKDAGILAEVTGTTSFGKDTKGKQRLVITDLDGNQHEFLIPKEKQVLVH
DGQVVNKGEMIVDGPADPHDILRLQGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQIVDSGDTRFITGEQVERSEMLDENDAMIAADKRPAQYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLIPAGTGLAYHKARKARETSDRER
HDQIALEEAFAPIPTSVEEPTAE
NT seq 4212 nt   +upstreamnt  +downstreamnt
atgaaagctttgctcgatctattcaagcaagtccagcaggacgaacagttcgacgcgatc
aagatcggtctggcttcgccggacaagatccgctcgtggtcgttcggtgaagtgaaaaag
ccggagacgatcaactaccggaccttcaagcccgaacgcgacggtttgttctgcgcaaag
atcttcggtccgatcaaggactacgaatgcctttgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgttgaagtgacgctggccaaggtgcgccgtgag
cgcatgggccacatcgaactggcttcgccggtcgcgcacatctggttcctgaagtcgctc
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgatatcgaacgcgtgctgtac
ttcgaagcctacgtggttctcgaaccgggcatgacgccgctcaagcgttgccagatcatg
accgaggaggattactacaacaaggtcgaggaatacggcgacgagttccgtgccgagatg
ggcgcggaaggcgtgcgcgagctgctgcgctcgatcgacatcgaccagcaggtcgagcat
ctgcgcgccgagctgcaagccacgggctcggaagccaagatcaagaagtacgccaagcgc
ctgaaggtgctcgaggcattccagcgctcgggtatcaagcccgaatggatggtgctcgaa
gtgctgccggtgctcccgcccgaactgcgcccgctggtgccgctcgacggtggccgcttc
gcgacctcggacctgaacgatctgtatcgtcgcgtcatcaaccgtaacaaccgtctgaag
cgtctgctcgaactcaaggcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcaa
gagtccgtggactcgctgctcgacaacggccgtcgcggcaaggcgatgaccggtgcgaac
aagcgcccgctcaagtcgctggccgacatgatcaagggtaagagcggtcgtttccgtcag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtcattaccgtgggcccgacg
ctcaagctgcatcagtgcggtctgccgaagctcatggcactcgaactcttcaagccgttc
atcttccacaagctggaagtgatgggcgtggccacgaccatcaaggccgcgaagaaggaa
gtcgagaaccagacggcggtggtgtgggacatcctcgaagaggtgatccgcgagcatccg
atcatgctgaaccgcgcaccgacgctgcaccgcctgggcattcaggcgttcgagccggtg
ctcatcgaaggcaaggcaattcagcttcacccgctggtttgcgcggcgttcaacgccgac
ttcgacggtgaccagatggctgttcacgtgccgctgtcgctcgaagcgcagatggaagcg
cgtaccctgatgctggcctcgaacaacgtgttgttcccggctaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctcggtctgtactatgcgacccgcgacaagatcaacggc
cacggcgaaggcctgtcgtttaccgacgtctcggaagtgctgcgcgcgtacgacaacaag
gaagtcgaactggcttcgcgtgtgaacgtgcgtatcacggagtacacggtcgatccggaa
acgggcgagaagacgccgaaggtcacgctgtacccgacgaccgtcggccgcgcgatcctg
tcggaaattctgcccccgggcctgccgttctcggtgctgaacaagtcgctcaagaagaag
gaaatctcgaagctgatcaacacggcgttccgccgctgcggtctgcgcgagacggtgatc
ttcgtcgacaagctgatgcagtcgggcttccgcctggcaacgcgtgccggtatctcgatc
tgcgtggacgacatgctcgtgccgacgaagaaggaagagcttatcggcgaagcgtcgaag
aaggtcaaggaatacgaccgtcagtacatgtcgggtctggtcacggcgcaagagcgttac
aacaacgtcgtggacatttggggtgctaccggtgacgccgtgggtaaggcgatgatggag
cagctctcgaaggagaagacgatcgaccgcgacggcaacgccgtggatcaggagtcgttc
aactcgatttacatgatggccgactccggtgctcgcggttcgagcgcccagattcgccag
ctcgccggtatgcgtggcctgatggccaagccggacggctcgattatcgagacgccgatt
accgcgaacttccgcgaaggcctgaacgtgttgcagtacttcatctcgacgcacggcgcc
cgtaagggtctggccgatacggcgctgaagacggcaaactcgggttacctgacgcgtcgt
ctggtcgacgtgacgcaggatctggtcgtggtcgaagacgattgcggcacgagcaacggc
gtggcgatgaaggcgctggtcgagggcggtgaagtggtcgaagccctgcgtgaccgtatc
ctgggccgtgtggccgtggccgacgtcgtgaatccggagacccaagaaacggtgtacgag
gccggcacgctgctggacgaagacgtcgtcgaaatgatcgagtcgctgggtatcgacgaa
gtgcgcgtgcgcacgccgctgacctgcgatacgcgctatggtctgtgcgctgcctgctac
ggccgcgatctgggccgcggttcgcgcgtgaacgtcggcgaagccgtcggcgtgatcgcg
gcgcagtcgatcggtgagccgggcacgcagctgacgatgcgtacgttccacatcggtggt
gcggcatcgcgcgcggcagtggcctcgtcgatcgaagccaagtcgaacggtacggttcgc
ttcacggcgaccatgcgttacgtgacgaacggcaagggcgagcagatcgcgatctcgcgt
tcgggtgaaatcctgatcaccgacgatcacggtcgcgagcgcgagcgtcacaaggtgccg
tacggcgccacgctgctgcaactggacggcgcacaggtcaaggccggtgcccaactgggt
acgtgggatccgctgacgcgcccgatcattaccgaacacggcggtttcgccaagttcgag
aacgtcgaggaaggtgtcacggtcgccaagcagatcgacgatgtgacgggtctgtccacg
ctggtcgtgatcgatccgaagcgtcgcggtccggcgtcgaagaacgtgcgtccgcaggtc
aagctgctcgacgaaaacggtgtggaagtgaagatcccgggtaccgaccacccggtgacg
atcggcttccaggtgggcgccctgattacgatcaaggacggccagccggtgccggtgggc
gaagtgctcgcacgtatcccgaccgaagcgcagaagacccgcgacattaccgggggtctg
ccgcgtgtggccgaactgttcgaagcgcgtgcaccgaaggacgccggcattctggccgaa
gtcacgggtaccacgtcgttcggtaaggacacgaagggcaagcagcgtctggtcattacc
gatctggacggcaaccagcacgagttcctgattccgaaggaaaagcaggtgctggtgcac
gacggtcaggtggtgaacaagggtgaaatgatcgtggacggcccggccgacccgcacgac
atcctgcgtctgcaaggtatcgaagcactggcgcgttacatcgtcgacgaagtgcaggac
gtgtaccgtttgcagggtgtgaagatcaacgacaagcacatcgaggtgatcgttcgccag
atgctgcgtcgtgtgcagatcgtcgattcgggcgatacgcgcttcatcaccggcgaacag
gtcgaacgctcggaaatgctcgacgagaacgatgccatgatcgccgcggacaagcgtccg
gcgcagtacgagaacgtgttgctgggtattacgaaggcgtcgctgtcgacggattcgttc
atctccgccgcatcgttccaggaaacgacgcgcgtgctgaccgaagccgcgatcatgggc
aagaaggacgacctgcgtggcctgaaggaaaacgtcatcgttggccgtctgatcccggca
ggtacgggtctggcgtatcacaaggctcgcaaggcccgcgaaacgtcggatcgcgagcgt
cacgaccagatcgctctggaagaggcgtttgccccgatccccacttcggtggaagaaccg
accgcagagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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