KEGG   Pseudomonas frederiksbergensis: PFAS1_16610
Entry
PFAS1_16610       CDS       T04786                                 
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
  KO
K01928  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
Organism
pfk  Pseudomonas frederiksbergensis
Pathway
pfk00300  Lysine biosynthesis
pfk00550  Peptidoglycan biosynthesis
pfk01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:pfk00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00300 Lysine biosynthesis
    PFAS1_16610
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    PFAS1_16610
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:pfk01011]
    PFAS1_16610
Enzymes [BR:pfk01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.13  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
     PFAS1_16610
Peptidoglycan biosynthesis and degradation proteins [BR:pfk01011]
 Precursor biosynthesis
  Amino acid ligase
   PFAS1_16610
SSDB
Motif
Pfam: Mur_ligase_M Mur_ligase_C Mur_ligase PipB2_N
Other DBs
NCBI-ProteinID: APV40888
UniProt: A0A1P8EXG0
Position
3578242..3579705
AA seq 487 aa
MSLSLNKIFAHAGRDLLIRELTLDSRNVRAGDLFLAVPGGKFDGRAHIADALQRGAAAVA
YEVEGATVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRHLNLIGVTGTNGKTSVTQLVA
QALDLLGQHCGIVGTLGTGFYGALESGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHG
LDQGRVTALAFDVAVMTNLSRDHLDYHGTMQAYGEAKAKLFAWNDLKCRVVNLDDDFGRR
LAADDGESRLITYSLEDSRAYLYCREAQFDDEGVRATLVTPQGEHHLRSTLLGRFNLSNV
LAAVGALLGLDYALDEILKVLPKLEGPAGRMQRLGGGTQPLVVVDYAHTPDALEKVLMAL
RPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVLVTDDNPRTEDPAVIFDDIRAGF
TAVDKVTFVAGRGQAIAQLIASASADDVIVLAGKGHEDYQEINGQRHAFSDLVEADHALS
AWEVAHA
NT seq 1464 nt   +upstreamnt  +downstreamnt
atgtctctgagcctgaacaagattttcgcccacgccggccgcgatctgttgatccgcgaa
ctgaccctggacagccgcaacgtgcgggcaggcgatctgtttctcgccgtccctggcggc
aagttcgacggacgcgcacacattgccgacgccctgcaacgcggcgctgccgctgtggcg
tatgaagtcgaaggcgcgaccgtattgccgattaccgatgtgccgctgattccggtcaaa
ggcctggcggcgcagctgtcggacattgccgggcgtttttacggtgaccctagtcgccac
ttgaacctaatcggcgtgaccggcaccaacggcaaaaccagcgtgacgcagttggttgca
caagccctggatttgctcggccagcattgcggcatcgtcggcacgttgggcaccggtttt
tacggcgcgctcgaaagcggcttgcacaccacaccgaacccgatcgccgtgcaggcaacc
ctcgccgacctgaaaaaggccggtgccaaagccgtcgccatggaggtttcttcccatggt
ctggatcaggggcgcgtgaccgccttggccttcgatgtggcggtgatgaccaacctgtcc
cgcgatcacctggattaccacggcacgatgcaagcctacggcgaagccaaggccaagttg
tttgcctggaatgatttgaagtgccgggtggtcaacctcgacgacgatttcggccgccga
ctggccgctgatgatggtgagtcgcgcttgatcacctatagcctggaagactccagggcc
tacctttattgccgtgaagcgcagttcgatgacgagggcgtgcgcgccacgctggtcacg
ccgcagggtgagcatcatctgcgcagcaccttgctcggtcgcttcaacctgagcaacgtg
ctggccgcggtcggcgccttgctgggtcttgactacgcgctggacgaaattctcaaggtc
ctgccaaaactcgaaggcccggccggacgcatgcagcgcctcggcggcggtactcagccg
ctggtggtggtcgattacgctcatacaccggatgcgctggaaaaagtcttgatggccctg
cgccctcacgccaaaggtcgtttgctgtgcctgttcggttgcggtggtgatcgcgatcgc
ggcaagcgtccgctgatggctgaagtggtcgagcgtctggctgacggcgtgctggtgacc
gatgacaacccgcgcaccgaagacccggcagtgatcttcgacgacatccgcgccggtttt
accgctgtggataaagtcaccttcgtcgcaggccgtggccaggcgattgcccaactgatc
gccagcgcttcggcggatgatgtgattgtcctggccggtaaaggtcacgaggactatcag
gaaatcaacggccagcgtcatgctttctccgatctggtcgaggccgatcacgccttgagc
gcgtgggaggtggcccatgcttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (23)   

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