KEGG   Pseudomonas protegens Pf-5: PFL_6102
Entry
PFL_6102          CDS       T00249                                 
Symbol
hupA
Name
(GenBank) DNA-binding protein HU, alpha subunit
  KO
K05787  DNA-binding protein HU-alpha
Organism
pfl  Pseudomonas protegens Pf-5
Brite
KEGG Orthology (KO) [BR:pfl00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pfl03032]
    PFL_6102 (hupA)
   03036 Chromosome and associated proteins [BR:pfl03036]
    PFL_6102 (hupA)
   03400 DNA repair and recombination proteins [BR:pfl03400]
    PFL_6102 (hupA)
DNA replication proteins [BR:pfl03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    PFL_6102 (hupA)
Chromosome and associated proteins [BR:pfl03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    PFL_6102 (hupA)
DNA repair and recombination proteins [BR:pfl03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      PFL_6102 (hupA)
SSDB
Motif
Pfam: Bac_DNA_binding HU-CCDC81_bac_2 HU-HIG HU-CCDC81_euk_1 HU-CCDC81_euk_2 HU-CCDC81_bac_1
Other DBs
NCBI-ProteinID: AAY95290
UniProt: Q4K3M3
Position
complement(6932447..6932722)
AA seq 91 aa
MRKPELAAAIAEKADLTKEQANRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTG
KNPQTGEPVKIKASNTVAFKPGKSLKDSVNP
NT seq 276 nt   +upstreamnt  +downstreamnt
atgcgtaaaccagaactcgccgcagccattgctgaaaaagcggacctgaccaaagagcag
gccaatcgcgtgctcaacgccattcttgaagagatcaccggggctctgcaccgcaaagac
agcgtcaccctggttggttttggcaccttcctgcaacgccaccgtggcgcccgcaccggc
aagaacccgcagaccggcgagccggtaaagatcaaggccagcaacaccgtggcattcaaa
ccgggcaagtcgctgaaagacagcgtcaacccataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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